Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g12420 Schrenkiella parvula HOM05D002943 ORTHO05D002685 5.2e-54 215.7 318 100.0
Thhalv10010551m.g Eutrema salsugineum HOM05D002943 ORTHO05D002685 2.6e-45 186.8 318 92.8
Carub.0005s1601 Capsella rubella HOM05D002943 ORTHO05D002685 6.5e-41 172.2 318 88.7
CARHR158730 Cardamine hirsuta HOM05D002943 ORTHO05D002685 9.4e-40 168.3 319 88.7
AL5G29510 Arabidopsis lyrata HOM05D002943 ORTHO05D002685 1.0e-38 164.9 318 90.9
AT3G49660 Arabidopsis thaliana HOM05D002943 ORTHO05D002685 1.8e-38 164.1 318 89.9
Aa31LG4G18140 Aethionema arabicum HOM05D002943 ORTHO05D002685 2.3e-38 163.7 318 90.9
BcaB01g00685 Brassica carinata HOM05D002943 ORTHO05D002685 8.8e-38 161.8 317 90.9
THA.LOC104798430 Tarenaya hassleriana HOM05D002943 ORTHO05D002685 4.4e-37 159.5 320 85.3
BcaC01g02426 Brassica carinata HOM05D002943 ORTHO05D002685 3.7e-36 156.4 315 89.8
C03p65420 Brassica napus HOM05D002943 ORTHO05D002685 3.7e-36 156.4 315 89.8
BolC3t18794H Brassica oleracea HOM05D002943 ORTHO05D002685 3.7e-36 156.4 315 89.8
BraA06t25785Z Brassica rapa HOM05D002943 ORTHO05D002685 4.8e-36 156.0 317 90.5
A06p28410 Brassica napus HOM05D002943 ORTHO05D002685 3.1e-35 153.3 316 90.2
Carub.0008s2659 Capsella rubella HOM05D002943 ORTHO05D002685 6.8e-30 135.6 319 88.4
ClCG01G018070 Citrullus lanatus HOM05D002943 ORTHO05D002685 8.0e-23 112.1 320 82.5
arahy.Tifrunner.gnm1.ann1.RFJS66 Arachis hypogaea HOM05D002943 ORTHO05D002685 6.8e-22 109.0 315 74.6
Lj4g0007346 Lotus japonicus HOM05D002943 ORTHO05D002685 6.8e-22 109.0 312 82.7
Thecc.01G081600 Theobroma cacao HOM05D002943 ORTHO05D002685 8.9e-22 108.6 311 79.7
arahy.Tifrunner.gnm1.ann1.DT5KC6 Arachis hypogaea HOM05D002943 ORTHO05D002685 1.5e-21 107.8 315 73.3
arahy.Tifrunner.gnm1.ann1.MJC5Q8 Arachis hypogaea HOM05D002943 ORTHO05D002685 1.5e-21 107.8 315 73.3
COL.COLO4_11661 Corchorus olitorius HOM05D002943 ORTHO05D002685 1.5e-21 107.8 310 83.9
TPR.G3207 Trifolium pratense HOM05D002943 ORTHO05D002685 2.6e-21 107.1 327 72.2
Medtr4g119620 Medicago truncatula HOM05D002943 ORTHO05D002685 5.8e-21 105.9 327 71.9
Ca_14440_v3 Cicer arietinum L. HOM05D002943 ORTHO05D002685 9.8e-21 105.1 317 72.9
Gohir.D11G212900 Gossypium hirsutum HOM05D002943 ORTHO05D002685 9.8e-21 105.1 311 83.3
Gorai.007G228800 Gossypium raimondii HOM05D002943 ORTHO05D002685 9.8e-21 105.1 311 83.3
Lalb_Chr13g0303681 Lupinus albus HOM05D002943 ORTHO05D002685 9.8e-21 105.1 318 71.4
CiPaw.07G041100 Carya illinoinensis HOM05D002943 ORTHO05D002685 1.3e-20 104.8 323 80.2
Lalb_Chr07g0177661 Lupinus albus HOM05D002943 ORTHO05D002685 1.3e-20 104.8 318 73.6
Phvul.003G104000 Phaseolus vulgaris HOM05D002943 ORTHO05D002685 1.3e-20 104.8 315 73.7
VMungo1215G0795 Vigna mungo HOM05D002943 ORTHO05D002685 1.3e-20 104.8 315 73.7
CsaV3_6G044600 Cucumis sativus L. HOM05D002943 ORTHO05D002685 1.7e-20 104.4 317 82.3
Gohir.A11G210200 Gossypium hirsutum HOM05D002943 ORTHO05D002685 2.2e-20 104.0 311 83.0
Haze_03949 Corylus avellana HOM05D002943 ORTHO05D002685 3.7e-20 103.2 311 80.7
Manes.12G119800 Manihot esculenta HOM05D002943 ORTHO05D002685 4.9e-20 102.8 315 83.2
Cpa.g.sc129.34 Carica papaya HOM05D002943 ORTHO05D002685 1.1e-19 101.7 325 72.0
TWI74G1409 Tripterygium wilfordii HOM05D002943 ORTHO05D002685 1.1e-19 101.7 312 82.1
Psat0s2006g0120 Pisum sativum HOM05D002943 ORTHO05D002685 1.4e-19 101.3 317 69.7
Cfa006809 Carpinus fangiana HOM05D002943 ORTHO05D002685 3.2e-19 100.1 311 82.6
Duzib147G1423 Durio zibethinus HOM05D002943 ORTHO05D002685 4.1e-19 99.8 310 81.3
CANSAT01G2837 Cannabis sativa HOM05D002943 ORTHO05D002685 9.2e-19 98.6 315 81.9
CARHR279680 Cardamine hirsuta HOM05D002943 ORTHO05D002685 1.2e-18 98.2 101 81.2
Duzib187G0476 Durio zibethinus HOM05D002943 ORTHO05D002685 1.6e-18 97.8 310 82.9
Glyma.07G248900 Glycine max HOM05D002943 ORTHO05D002685 1.6e-18 97.8 311 73.0
AL8G43350 Arabidopsis lyrata HOM05D000117 ORTHO05D000070 4.6e-18 96.3 110 76.4
AL8G43360 Arabidopsis lyrata HOM05D001456 ORTHO05D013730 4.6e-18 96.3 110 76.4
Ciclev10026097m.g Citrus clementina HOM05D002943 ORTHO05D002685 4.6e-18 96.3 314 82.2
Glyma.17G025400 Glycine max HOM05D002943 ORTHO05D002685 1.0e-17 95.1 311 72.7
TWI53G1603 Tripterygium wilfordii HOM05D002943 ORTHO05D002685 1.3e-17 94.7 310 81.0
Sc09g0001310 Simmondsia chinensis HOM05D002943 ORTHO05D002685 2.3e-17 94.0 323 78.0
Sabra07G0007300 Salix brachista HOM05D002943 ORTHO05D002685 3.9e-17 93.2 308 82.8
SalBow3G3920 Salvia bowleyana HOM05D002943 ORTHO05D002685 8.6e-17 92.0 320 76.6
Sed0027180 Sechium edule HOM05D002943 ORTHO05D002685 8.6e-17 92.0 319 79.0
RcHm_v2.0_Chr2g0109631 Rosa chinensis HOM05D002943 ORTHO05D002685 1.1e-16 91.7 313 71.6
Potri.007G009500 Populus trichocarpa HOM05D002943 ORTHO05D002685 1.9e-16 90.9 311 81.4
SGA_v2.0_scaffold121G33104 Striga asiatica HOM05D002943 ORTHO05D002685 2.5e-16 90.5 323 74.9
MD16G1282400 Malus domestica HOM05D002943 ORTHO05D002685 3.3e-16 90.1 313 80.8
MD01G1047000 Malus domestica HOM05D002943 ORTHO05D002685 4.3e-16 89.7 311 81.4
Ah.06g195170 Amaranthus hybridus HOM05D002943 ORTHO05D002685 7.3e-16 89.0 312 77.2
Prupe.6G211800 Prunus persica HOM05D002943 ORTHO05D002685 7.3e-16 89.0 313 71.2
Hund07388 Selenicereus undatus HOM05D002943 ORTHO05D002685 2.1e-15 87.4 310 79.0
GSVIVG01003702001 Vitis vinifera HOM05D002943 ORTHO05D002685 3.6e-15 86.7 308 81.5
Migut.H00305 Erythranthe guttata HOM05D002943 ORTHO05D002685 8.0e-15 85.5 320 80.0
FvH4_1g18760 Fragaria vesca HOM05D002943 ORTHO05D002685 8.0e-15 85.5 311 80.7
FAN19G1191 Fragaria x ananassa HOM05D002943 ORTHO05D002685 8.0e-15 85.5 311 80.7
SHI12121 Sapria himalayana HOM05D002943 ORTHO05D002685 8.0e-15 85.5 311 79.4
Aqoxy5G01866 Aquilegia oxysepala HOM05D002943 ORTHO05D002685 1.8e-14 84.3 308 80.5
PGR031G0631 Punica granatum HOM05D002943 ORTHO05D002685 2.3e-14 84.0 312 80.1
EL10Ac4g10037 Beta vulgaris HOM05D002943 ORTHO05D002685 4.0e-14 83.2 312 77.6
AUR62000261 Chenopodium quinoa HOM05D002943 ORTHO05D002685 8.9e-14 82.0 316 64.6
FAN23G1457 Fragaria x ananassa HOM05D002943 ORTHO05D002685 1.2e-13 81.6 311 80.7
FAN28G1172 Fragaria x ananassa HOM05D002943 ORTHO05D002685 1.2e-13 81.6 311 80.7
Potri.005G148500 Populus trichocarpa HOM05D002943 ORTHO05D002685 1.5e-13 81.3 310 81.0
QL06p037843 Quercus lobata HOM05D002943 ORTHO05D002685 7.5e-13 79.0 327 57.5
Rhsim10G0085400 Rhododendron simsii HOM05D002943 ORTHO05D002685 4.9e-12 76.3 308 76.6
Oeu025000.1 Olea europaea HOM05D002943 ORTHO05D002685 7.0e-11 72.4 314 78.7
AUR62006609 Chenopodium quinoa HOM05D002943 ORTHO05D002685 9.2e-11 72.0 316 57.6
Atru.chr3.1120 Acer truncatum HOM05D002943 ORTHO05D002685 1.6e-10 71.2 129 86.0
Psat0s2006g0160 Pisum sativum HOM05D002943 ORTHO05D002685 4.6e-10 69.7 104 61.5
Eucgr.H02400 Eucalyptus grandis HOM05D002943 ORTHO05D002685 6.0e-10 69.3 315 78.7
ECA238G4010 Erigeron canadensis HOM05D002943 ORTHO05D002685 2.3e-09 67.4 125 86.4
HanXRQChr14g0447041 Helianthus annuus HOM05D002943 ORTHO05D002685 3.9e-09 66.6 126 85.7
Oeu012607.1 Olea europaea HOM05D002943 ORTHO05D002685 3.9e-09 66.6 125 84.8
Dinv36997 Davidia involucrata HOM05D002943 ORTHO05D002685 5.1e-09 66.2 126 86.5
MBI16_g14668_MAGBIO Magnolia biondii HOM05D002943 ORTHO05D002685 5.1e-09 66.2 311 75.6
Nitab4.5_0000396g0220 Nicotiana tabacum HOM05D002943 ORTHO05D002685 5.1e-09 66.2 316 77.8
Nitab4.5_0000093g0160 Nicotiana tabacum HOM05D002943 ORTHO05D002685 6.6e-09 65.9 316 77.5
Oeu054736.1 Olea europaea HOM05D002943 ORTHO05D002685 8.6e-09 65.5 83 41.0
unitig_0.g486 Utricularia gibba HOM05D002943 ORTHO05D002685 8.6e-09 65.5 103 63.1
Hma1.2p1_0996F.1_g245920 Hydrangea macrophylla HOM05D002943 ORTHO05D002685 1.1e-08 65.1 125 86.4
Lsat_1_v5_gn_2_81981 Lactuca sativa HOM05D002943 ORTHO05D002685 1.1e-08 65.1 317 77.9
Actinidia11939 Actinidia chinensis HOM05D002943 ORTHO05D002685 1.5e-08 64.7 314 48.1
PSO541G4758 Papaver somniferum HOM05D002943 ORTHO05D002685 1.5e-08 64.7 129 83.7
PSO675G4958 Papaver somniferum HOM05D002943 ORTHO05D002685 1.5e-08 64.7 129 83.7
Zm00001eb055840 Zea mays HOM05D002943 ORTHO05D002685 1.9e-08 64.3 323 72.4
Cc07_g07680 Coffea canephora HOM05D002943 ORTHO05D002685 2.5e-08 63.9 126 84.9
Lj2C426T10 Lonicera japonica HOM05D002943 ORTHO05D002685 3.3e-08 63.5 84 40.5
Actinidia36393 Actinidia chinensis HOM05D002943 ORTHO05D002685 5.6e-08 62.8 129 83.7
Lj4A173G12 Lonicera japonica HOM05D002943 ORTHO05D002685 5.6e-08 62.8 129 82.9
TAR376G1143 Trochodendron aralioides HOM05D002943 ORTHO05D002685 5.6e-08 62.8 129 82.9
TAR628G0306 Trochodendron aralioides HOM05D002943 ORTHO05D002685 5.6e-08 62.8 129 82.9
Nn1g05949 Nelumbo nucifera HOM05D002943 ORTHO05D002685 7.3e-08 62.4 129 82.9
Os03g0725400 Oryza sativa ssp. japonica HOM05D002943 ORTHO05D002685 9.5e-08 62.0 322 64.9
Nn1g05606 Nelumbo nucifera HOM05D002943 ORTHO05D002685 1.2e-07 61.6 86 38.4
vmacro05467 Vaccinium macrocarpon HOM05D002943 ORTHO05D002685 1.2e-07 61.6 86 39.5
Ciclev10033651m.g Citrus clementina HOM05D002943 ORTHO05D002685 2.1e-07 60.8 315 38.4
Dinv26988 Davidia involucrata HOM05D002943 ORTHO05D002685 2.8e-07 60.5 308 77.6
CSS0032407 Camellia sinensis var. sinensis HOM05D002943 ORTHO05D002685 3.6e-07 60.1 86 37.2
CDE06G1770 Ceratophyllum demersum HOM05D002943 ORTHO05D002685 4.7e-07 59.7 129 81.4
ATR0332G110 Amborella trichopoda HOM05D002943 ORTHO05D002685 6.2e-07 59.3 129 82.2
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 6.2e-07 59.3 85 34.1
HPP92_012269 Vanilla planifolia HOM05D002943 ORTHO05D002685 8.1e-07 58.9 85 74.1
Zm00001eb276600 Zea mays HOM05D002943 ORTHO05D002685 8.1e-07 58.9 85 34.1
CDE04G2187 Ceratophyllum demersum HOM05D002943 ORTHO05D002685 1.1e-06 58.5 129 81.4
Pp3c10_4790 Physcomitrium patens HOM05D009278 ORTHO05D002685 1.1e-06 58.5 122 83.6
Mapoly0035s0097 Marchantia polymorpha HOM05D002943 ORTHO05D002685 1.8e-06 57.8 124 85.5
Pp3c14_5700 Physcomitrium patens HOM05D009278 ORTHO05D002685 2.3e-06 57.4 122 83.6
Zm00001eb325000 Zea mays HOM05D002943 ORTHO05D002685 2.3e-06 57.4 81 38.3
Zm00001eb325010 Zea mays HOM05D002943 ORTHO05D002685 2.3e-06 57.4 81 38.3
Ciclev10021263m.g Citrus clementina HOM05D002943 ORTHO05D002685 3.1e-06 57.0 308 71.8
SMO119G0268 Selaginella moellendorffii HOM05D002943 ORTHO05D002685 3.1e-06 57.0 125 83.2
ATR0332G039 Amborella trichopoda HOM05D002943 ORTHO05D002685 4.0e-06 56.6 86 37.2
VMungo0720G0375 Vigna mungo HOM05D002943 ORTHO05D002685 4.0e-06 56.6 308 41.2
Atru.chr5.1459 Acer truncatum HOM05D002943 ORTHO05D002685 5.2e-06 56.2 82 78.0
Solyc02g091790.3 Solanum lycopersicum HOM05D002943 ORTHO05D002685 6.8e-06 55.8 54 50.0
Sopen02g036370 Solanum pennellii HOM05D002943 ORTHO05D002685 6.8e-06 55.8 54 50.0
Peaxi162Scf00939g00121 Petunia axillaris HOM05D002943 ORTHO05D002685 8.9e-06 55.5 54 48.1


User provided reference genes

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