Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 4.8e-96 355.1 278 100.0
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.6e-91 340.1 278 96.0
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 1.9e-89 333.2 279 95.0
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 4.8e-88 328.6 278 95.3
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 6.2e-88 328.2 283 94.3
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 1.4e-87 327.0 278 95.0
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 1.4e-87 327.0 278 95.0
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 4.0e-87 325.5 280 95.0
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 4.0e-87 325.5 280 95.0
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 4.0e-87 325.5 280 95.0
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 5.3e-87 325.1 278 95.0
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 1.2e-86 323.9 280 94.6
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 1.2e-86 323.9 280 94.6
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 4.5e-86 322.0 279 94.6
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 2.9e-85 319.3 279 93.5
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 8.4e-85 317.8 267 95.9
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.1e-81 307.4 277 91.7
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.0e-77 294.3 278 89.2
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 6.0e-75 285.0 278 87.1
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 5.1e-74 282.0 278 86.0
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 3.3e-73 279.3 279 86.0
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 7.4e-73 278.1 278 86.3
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 1.1e-71 274.2 277 85.6
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 1.4e-71 273.9 279 85.7
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 6.9e-71 271.6 277 85.2
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 1.2e-70 270.8 277 84.8
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 1.5e-70 270.4 277 84.8
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 1.5e-70 270.4 277 84.8
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 5.9e-70 268.5 281 84.7
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 5.5e-68 261.9 277 83.0
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 1.7e-64 250.4 267 83.5
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 9.1e-63 244.6 272 73.9
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 1.5e-62 243.8 267 83.1
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.6e-62 243.0 269 83.6
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 3.4e-62 242.7 269 81.0
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 1.7e-61 240.4 267 82.8
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.7e-61 240.4 268 83.2
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.7e-61 240.4 268 83.2
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 5.0e-61 238.8 267 82.0
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 6.5e-61 238.4 267 80.5
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 1.4e-60 237.3 275 79.3
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 3.2e-60 236.1 251 84.9
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.2e-60 235.7 267 80.9
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 4.2e-60 235.7 268 80.6
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.2e-60 235.0 267 81.3
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 7.2e-60 235.0 267 81.3
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 1.2e-59 234.2 255 84.7
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.6e-59 233.8 269 80.7
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.1e-59 233.4 255 83.1
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 2.1e-59 233.4 271 81.2
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 3.6e-59 232.6 278 78.8
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.6e-59 232.6 278 78.8
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 6.1e-59 231.9 255 82.0
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.0e-58 231.1 278 78.1
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 1.8e-58 230.3 277 76.9
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.8e-58 230.3 253 82.2
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 2.3e-58 229.9 266 79.7
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 3.9e-58 229.2 266 78.6
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 5.1e-58 228.8 261 80.8
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 8.8e-58 228.0 265 79.2
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 8.8e-58 228.0 266 78.9
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 1.5e-57 227.3 265 80.0
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.3e-57 226.1 268 78.7
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 4.4e-57 225.7 253 82.6
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 7.4e-57 224.9 276 77.5
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 9.7e-57 224.6 268 78.4
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.3e-56 224.2 268 78.7
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 1.7e-56 223.8 266 80.1
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 2.8e-56 223.0 265 78.1
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 3.7e-56 222.6 252 81.0
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 1.1e-55 221.1 268 78.0
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 1.1e-55 221.1 268 78.0
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 1.4e-55 220.7 267 79.4
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 1.8e-55 220.3 268 76.5
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 2.4e-55 219.9 277 65.0
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 3.1e-55 219.5 267 77.9
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 7.0e-55 218.4 266 78.6
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 1.2e-54 217.6 253 78.3
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 1.5e-54 217.2 267 74.2
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 2.0e-54 216.9 266 78.2
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 2.0e-54 216.9 267 78.3
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 2.6e-54 216.5 269 76.2
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 5.9e-54 215.3 263 77.2
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 5.9e-54 215.3 271 77.5
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 7.7e-54 214.9 270 76.3
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 7.7e-54 214.9 267 71.5
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 1.0e-53 214.5 267 77.5
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 1.0e-53 214.5 267 77.5
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 1.3e-53 214.2 267 74.9
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.9e-53 213.0 271 76.4
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 2.9e-53 213.0 269 78.1
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 3.8e-53 212.6 275 75.3
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 3.8e-53 212.6 258 77.5
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 1.1e-52 211.1 270 76.3
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 7.2e-52 208.4 269 75.8
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 7.2e-52 208.4 269 74.3
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 9.4e-52 208.0 269 75.5
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.2e-51 207.6 270 50.0
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 1.6e-51 207.2 269 74.3
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 2.1e-51 206.8 265 74.0
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 2.1e-51 206.8 251 80.1
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 2.1e-51 206.8 268 76.1
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 2.7e-51 206.5 265 74.3
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 2.7e-51 206.5 265 74.3
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 2.7e-51 206.5 230 87.4
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 4.7e-51 205.7 274 74.5
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 4.7e-51 205.7 254 77.6
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 1.0e-50 204.5 273 75.1
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 1.8e-50 203.8 267 75.7
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 2.3e-50 203.4 265 71.3
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 6.7e-50 201.8 270 74.8
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 8.8e-50 201.4 278 73.7
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 1.5e-49 200.7 258 77.9
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 2.0e-49 200.3 265 75.8
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 2.6e-49 199.9 244 80.3
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 9.7e-49 198.0 251 76.1
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 3.7e-48 196.1 254 76.8
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 1.8e-47 193.7 277 74.0
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 2.4e-47 193.4 266 74.8
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 3.1e-47 193.0 254 78.0
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 1.2e-46 191.0 269 66.9
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.2e-46 191.0 265 74.3
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 1.0e-45 188.0 274 73.7
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 1.0e-45 188.0 269 72.9
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 1.0e-45 188.0 268 72.0
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 3.8e-45 186.0 244 79.1
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 3.8e-45 186.0 230 83.5
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 1.9e-44 183.7 273 68.9
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 2.5e-44 183.3 254 70.5
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 5.5e-44 182.2 278 41.4
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 1.6e-43 180.6 269 72.9
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 3.6e-43 179.5 269 74.0
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 1.0e-42 177.9 260 71.5
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 2.3e-42 176.8 252 73.0
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 2.3e-42 176.8 256 73.8
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 2.3e-42 176.8 261 71.3
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 5.2e-42 175.6 238 80.3
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 9.7e-41 171.4 230 80.4
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 1.3e-40 171.0 232 80.6
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.7e-40 169.5 240 78.3
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 1.7e-37 160.6 210 83.3
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-33 147.5 252 70.6
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 9.8e-33 144.8 209 79.9
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 1.4e-31 141.0 81 80.2
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.5e-28 130.2 276 64.5
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 3.3e-28 129.8 86 75.6
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.2e-27 127.9 227 73.6
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 6.1e-27 125.6 97 66.0
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 6.8e-26 122.1 278 63.3
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 1.5e-25 120.9 251 55.0
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 7.5e-25 118.6 87 69.0
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 2.8e-24 116.7 273 57.5
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 2.9e-21 106.7 82 63.4
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 6.1e-19 99.0 83 59.0
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.4e-18 97.8 86 60.5
BcaB04g20035 Brassica carinata HOM05D004527 ORTHO05D005335 7.0e-15 85.5 78 62.8
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 2.8e-11 73.6 58 63.8
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 1.3e-08 64.7 234 59.4
AUR62008062 Chenopodium quinoa HOM05D000094 ORTHO05D001056 5.4e-07 59.3 99 38.4
Manes.01G019000 Manihot esculenta HOM05D000094 ORTHO05D001056 7.1e-07 58.9 78 41.0
RcHm_v2.0_Chr2g0084611 Rosa chinensis HOM05D000094 ORTHO05D001056 7.1e-07 58.9 81 34.6
CSS0003369 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 1.2e-06 58.2 103 34.0
HanXRQChr08g0231551 Helianthus annuus HOM05D000094 ORTHO05D001056 1.2e-06 58.2 90 34.4
TPR.G15150 Trifolium pratense HOM05D000094 ORTHO05D001056 1.2e-06 58.2 86 37.2
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 2.1e-06 57.4 53 47.2
FvH4_6g49690 Fragaria vesca HOM05D000094 ORTHO05D002904 2.7e-06 57.0 100 36.0
FAN14G5061 Fragaria x ananassa HOM05D000094 ORTHO05D002904 2.7e-06 57.0 100 36.0
arahy.Tifrunner.gnm1.ann1.VYJ8LR Arachis hypogaea HOM05D000094 ORTHO05D001056 3.5e-06 56.6 100 34.0
Nitab4.5_0001961g0060 Nicotiana tabacum HOM05D000094 ORTHO05D001056 3.5e-06 56.6 98 36.7
VMungo0331G1233 Vigna mungo HOM05D000094 ORTHO05D001056 3.5e-06 56.6 85 36.5
arahy.Tifrunner.gnm1.ann1.4453MP Arachis hypogaea HOM05D000094 ORTHO05D001056 4.6e-06 56.2 98 34.7
PGSC0003DMG400022632 Solanum tuberosum HOM05D000094 ORTHO05D002904 4.6e-06 56.2 80 40.0
EL10Ac5g10582 Beta vulgaris HOM05D000094 ORTHO05D001056 6.0e-06 55.8 99 36.4
Lju41C28T22 Lonicera japonica HOM05D000094 ORTHO05D002904 6.0e-06 55.8 80 38.8
Nitab4.5_0005361g0010 Nicotiana tabacum HOM05D000094 ORTHO05D001056 6.0e-06 55.8 98 36.7
QL10p061873 Quercus lobata HOM05D000094 ORTHO05D001056 6.0e-06 55.8 110 28.2
AUR62028640 Chenopodium quinoa HOM05D000094 ORTHO05D001056 7.8e-06 55.5 107 33.6
ClCG09G008010 Citrullus lanatus HOM05D000094 ORTHO05D001056 7.8e-06 55.5 84 34.5
ClCG09G012640 Citrullus lanatus HOM05D000094 ORTHO05D001056 7.8e-06 55.5 84 34.5
HanXRQChr17g0547281 Helianthus annuus HOM05D000094 ORTHO05D002904 7.8e-06 55.5 104 37.5
Medtr4g092530 Medicago truncatula HOM05D000094 ORTHO05D001056 7.8e-06 55.5 79 38.0


User provided reference genes

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