Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g12220 Schrenkiella parvula HOM05D006223 ORTHO05D009080 1.6e-107 392.9 215 100.0
Thhalv10010709m.g Eutrema salsugineum HOM05D006223 ORTHO05D009080 3.8e-93 345.1 217 86.6
AT3G49890 Arabidopsis thaliana HOM05D006223 ORTHO05D009080 3.7e-88 328.6 204 81.9
AL5G29900 Arabidopsis lyrata HOM05D006223 ORTHO05D009080 6.3e-88 327.8 204 80.9
CARHR158970 Cardamine hirsuta HOM05D006223 ORTHO05D009080 3.8e-85 318.5 218 77.5
A03p47580 Brassica napus HOM05D006223 ORTHO05D009080 1.4e-82 310.1 221 81.0
Carub.0005s1625 Capsella rubella HOM05D006223 ORTHO05D009080 1.7e-77 293.1 205 76.1
BraA03t13871Z Brassica rapa HOM05D006223 ORTHO05D009080 2.9e-77 292.4 209 80.4
Aa31LG4G18340 Aethionema arabicum HOM05D006223 ORTHO05D009080 3.6e-75 285.4 208 74.0
C07p45560 Brassica napus HOM05D006223 ORTHO05D009080 8.5e-69 264.2 221 71.0
BolC7t45077H Brassica oleracea HOM05D006223 ORTHO05D009080 8.5e-69 264.2 221 71.0
THA.LOC104827599 Tarenaya hassleriana HOM05D006223 ORTHO05D009080 1.5e-60 236.9 194 67.5
Cpa.g.sc6.19 Carica papaya HOM05D006223 ORTHO05D009080 2.7e-46 189.5 211 49.3
Glyma.17G160900 Glycine max HOM05D006223 ORTHO05D009080 3.9e-45 185.7 209 46.9
Sabra01G0139200 Salix brachista HOM05D006223 ORTHO05D009080 6.2e-43 178.3 216 46.3
Duzib147G0613 Durio zibethinus HOM05D006223 ORTHO05D009080 1.1e-42 177.6 230 43.0
Sed0023944 Sechium edule HOM05D006223 ORTHO05D009080 2.0e-41 173.3 217 46.1
Gohir.A11G215000 Gossypium hirsutum HOM05D006223 ORTHO05D009080 3.4e-41 172.6 235 43.8
Nitab4.5_0000142g0070 Nicotiana tabacum HOM05D006223 ORTHO05D009080 4.4e-41 172.2 206 45.6
Manes.12G113900 Manihot esculenta HOM05D006223 ORTHO05D009080 5.8e-41 171.8 211 45.0
Glyma.05G105500 Glycine max HOM05D006223 ORTHO05D009080 7.5e-41 171.4 199 45.2
TPR.G24252 Trifolium pratense HOM05D006223 ORTHO05D009080 9.8e-41 171.0 215 43.3
Medtr4g097030 Medicago truncatula HOM05D006223 ORTHO05D009080 1.3e-40 170.6 214 43.0
Phvul.003G235100 Phaseolus vulgaris HOM05D006223 ORTHO05D009080 1.3e-40 170.6 209 43.5
TWI09G0585 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 3.7e-40 169.1 206 45.1
Atru.chr3.1008 Acer truncatum HOM05D006223 ORTHO05D009080 8.3e-40 167.9 228 42.1
TWI73G0604 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 8.3e-40 167.9 206 45.6
CAN.G1075.35 Capsicum annuum HOM05D006223 ORTHO05D009080 3.2e-39 166.0 209 45.9
Ca_22107_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 3.2e-39 166.0 217 44.7
Ca_22114_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 3.2e-39 166.0 217 44.7
PGSC0003DMG400021418 Solanum tuberosum HOM05D006223 ORTHO05D009080 5.4e-39 165.2 204 45.1
Actinidia11984 Actinidia chinensis HOM05D006223 ORTHO05D009080 7.1e-39 164.9 220 44.5
Thecc.01G072400 Theobroma cacao HOM05D006223 ORTHO05D009080 9.2e-39 164.5 236 41.9
Nitab4.5_0002119g0100 Nicotiana tabacum HOM05D006223 ORTHO05D009080 1.2e-38 164.1 210 42.4
CSS0009729 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 1.6e-38 163.7 196 43.9
VMungo0251G3324 Vigna mungo HOM05D006223 ORTHO05D009080 1.6e-38 163.7 209 42.1
C08p24920 Brassica napus HOM05D006223 ORTHO05D009080 2.1e-38 163.3 158 60.8
Sopen02g036940 Solanum pennellii HOM05D006223 ORTHO05D009080 2.1e-38 163.3 198 46.0
Solyc02g092390.3 Solanum lycopersicum HOM05D006223 ORTHO05D009080 3.5e-38 162.5 201 44.8
BolC8t50110H Brassica oleracea HOM05D006223 ORTHO05D009080 6.0e-38 161.8 158 60.1
Haze_15285 Corylus avellana HOM05D006223 ORTHO05D009080 1.7e-37 160.2 222 40.1
Potri.001G172500 Populus trichocarpa HOM05D006223 ORTHO05D009080 2.3e-37 159.8 199 44.7
GSVIVG01000109001 Vitis vinifera HOM05D006223 ORTHO05D009080 3.0e-37 159.5 206 42.7
Lj7A96T45 Lonicera japonica HOM05D006223 ORTHO05D009080 6.6e-37 158.3 218 38.5
Lj4g0019733 Lotus japonicus HOM05D006223 ORTHO05D009080 6.6e-37 158.3 210 42.9
Gorai.007G223400 Gossypium raimondii HOM05D006223 ORTHO05D009080 8.6e-37 157.9 161 48.4
Hund16399 Selenicereus undatus HOM05D006223 ORTHO05D009080 8.6e-37 157.9 215 44.2
Gohir.D11G208400 Gossypium hirsutum HOM05D006223 ORTHO05D009080 1.1e-36 157.5 161 48.4
Psat4g081960 Pisum sativum HOM05D006223 ORTHO05D009080 1.9e-36 156.8 215 41.9
Ciclev10026365m.g Citrus clementina HOM05D006223 ORTHO05D009080 3.3e-36 156.0 220 41.8
MELO3C020909.2 Cucumis melo HOM05D006223 ORTHO05D009080 3.3e-36 156.0 204 41.7
Dinv04050 Davidia involucrata HOM05D006223 ORTHO05D009080 3.3e-36 156.0 205 40.5
GSVIVG01000118001 Vitis vinifera HOM05D006223 ORTHO05D009080 5.6e-36 155.2 193 41.5
AUR62040240 Chenopodium quinoa HOM05D006223 ORTHO05D009080 1.2e-35 154.1 204 43.6
PSO170G6824 Papaver somniferum HOM05D006223 ORTHO05D009080 2.1e-35 153.3 204 44.1
AUR62004007 Chenopodium quinoa HOM05D006223 ORTHO05D009080 2.8e-35 152.9 191 45.0
ECA246G3554 Erigeron canadensis HOM05D006223 ORTHO05D009080 3.6e-35 152.5 201 42.8
MSTRG.23673 Avicennia marina HOM05D006223 ORTHO05D009080 6.2e-35 151.8 207 40.6
Lalb_Chr05g0225861 Lupinus albus HOM05D006223 ORTHO05D009080 8.1e-35 151.4 201 41.3
arahy.Tifrunner.gnm1.ann1.BP3FRD Arachis hypogaea HOM05D006223 ORTHO05D009080 1.1e-34 151.0 209 45.9
Nn5g30588 Nelumbo nucifera HOM05D006223 ORTHO05D009080 1.1e-34 151.0 219 40.6
HanXRQChr15g0472641 Helianthus annuus HOM05D006223 ORTHO05D009080 8.9e-34 147.9 202 40.6
Eucgr.I00706 Eucalyptus grandis HOM05D006223 ORTHO05D009080 1.5e-33 147.1 211 38.4
CANSAT01G0277 Cannabis sativa HOM05D006223 ORTHO05D009080 2.0e-33 146.7 211 42.2
TAR625G1165 Trochodendron aralioides HOM05D006223 ORTHO05D009080 2.0e-33 146.7 204 40.2
Cfa004130 Carpinus fangiana HOM05D006223 ORTHO05D009080 4.4e-33 145.6 151 46.4
Migut.H00350 Erythranthe guttata HOM05D006223 ORTHO05D009080 5.8e-33 145.2 209 39.2
Peaxi162Scf00548g00643 Petunia axillaris HOM05D006223 ORTHO05D009080 9.9e-33 144.4 199 43.7
PGR004G2352 Punica granatum HOM05D006223 ORTHO05D009080 2.2e-32 143.3 163 45.4
CiPaw.01G004700 Carya illinoinensis HOM05D006223 ORTHO05D009080 1.9e-31 140.2 176 41.5
FAN28G1261 Fragaria x ananassa HOM05D006223 ORTHO05D009080 4.1e-31 139.0 200 41.0
Lsat_1_v5_gn_3_86181 Lactuca sativa HOM05D006223 ORTHO05D009080 7.1e-31 138.3 210 38.6
ClCG02G012630 Citrullus lanatus HOM05D003401 ORTHO05D003906 9.2e-31 137.9 204 42.2
Cc06_g22830 Coffea canephora HOM05D006223 ORTHO05D009080 9.2e-31 137.9 201 38.3
FAN26G2055 Fragaria x ananassa HOM05D006223 ORTHO05D009080 2.1e-30 136.7 199 40.7
Aqoxy5G00869 Aquilegia oxysepala HOM05D006223 ORTHO05D009080 6.0e-30 135.2 212 39.2
CDE06G0771 Ceratophyllum demersum HOM05D006223 ORTHO05D009080 6.0e-30 135.2 197 39.1
DCAR_025799 Daucus carota HOM05D006223 ORTHO05D009080 6.0e-30 135.2 202 38.6
RcHm_v2.0_Chr2g0108001 Rosa chinensis HOM05D006223 ORTHO05D009080 7.8e-30 134.8 196 39.8
Prupe.6G221000 Prunus persica HOM05D006223 ORTHO05D009080 1.7e-29 133.7 216 39.4
FvH4_1g17670 Fragaria vesca HOM05D006223 ORTHO05D009080 3.0e-29 132.9 199 40.7
FAN19G0818 Fragaria x ananassa HOM05D006223 ORTHO05D009080 6.6e-29 131.7 200 42.0
arahy.Tifrunner.gnm1.ann1.83HTFG Arachis hypogaea HOM05D006223 ORTHO05D009080 8.6e-29 131.3 243 38.7
Rhsim10G0099700 Rhododendron simsii HOM05D006223 ORTHO05D009080 9.6e-28 127.9 231 37.7
Ah.03g140550 Amaranthus hybridus HOM05D006223 ORTHO05D009080 1.6e-27 127.1 201 38.8
BcaB05g23172 Brassica carinata HOM05D006223 ORTHO05D009080 4.7e-27 125.6 134 63.4
MD15G1297100 Malus domestica HOM05D006223 ORTHO05D009080 1.4e-26 124.0 154 41.6
HPP92_024913 Vanilla planifolia HOM05D006223 ORTHO05D009080 3.1e-26 122.9 218 35.8
Zm00001eb400790 Zea mays HOM05D006223 ORTHO05D009080 5.2e-26 122.1 203 37.9
SGA_v2.0_scaffold72G24074 Striga asiatica HOM05D006223 ORTHO05D009080 4.4e-25 119.0 151 42.4
Os03g0201200 Oryza sativa ssp. japonica HOM05D006223 ORTHO05D009080 2.9e-24 116.3 205 40.5
Hma1.2p1_0852F.1_g228470 Hydrangea macrophylla HOM05D006223 ORTHO05D009080 1.9e-23 113.6 113 48.7
vmacro05408 Vaccinium macrocarpon HOM05D006223 ORTHO05D009080 1.9e-23 113.6 320 30.9
ATR1153G042 Amborella trichopoda HOM05D006223 ORTHO05D009080 3.0e-21 106.3 211 32.7
CSS0032370 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 2.2e-16 90.1 93 48.4
Sc16g0002890 Simmondsia chinensis HOM05D006223 ORTHO05D009080 2.2e-16 90.1 141 40.4
EL10Ac6g15621 Beta vulgaris HOM05D006223 ORTHO05D009080 4.9e-16 89.0 191 33.0
SHI12778 Sapria himalayana HOM05D006223 ORTHO05D009080 4.2e-15 85.9 180 33.9
COL.COLO4_11574 Corchorus olitorius HOM05D006223 ORTHO05D009080 1.0e-13 81.3 132 39.4
SEGI_10369 Sequoiadendron giganteum HOM05D006223 ORTHO05D009080 2.3e-13 80.1 143 37.1
HPP92_024909 Vanilla planifolia HOM05D006223 ORTHO05D009080 1.4e-10 70.9 69 53.6
Pp3c5_6560 Physcomitrium patens HOM05D006223 ORTHO05D009080 1.3e-08 64.3 225 28.0
Mapoly0001s0294 Marchantia polymorpha HOM05D006223 ORTHO05D009080 1.7e-08 63.9 222 32.9
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 6.4e-08 62.0 165 28.5
FAN23G0832 Fragaria x ananassa HOM05D006223 ORTHO05D009080 1.1e-07 61.2 125 36.0
unitig_21.g20422 Utricularia gibba HOM05D005082 ORTHO05D006474 1.4e-07 60.8 183 26.8
CBR_g54887 Chara braunii HOM05D006223 ORTHO05D009080 7.9e-06 55.1 142 30.3


User provided reference genes

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