Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 4080.8 2245 100.0
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 3350.8 2240 83.8
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 3263.4 2193 83.7
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 3174.0 2196 81.6
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 0.0e+00 3123.2 2160 80.3
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 3044.6 2290 77.2
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 0.0e+00 2994.1 2150 79.0
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 2362.8 2326 64.6
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 0.0e+00 2351.6 2251 68.4
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 0.0e+00 2142.1 2259 64.2
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 0.0e+00 2142.1 2259 64.2
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 0.0e+00 2134.0 2257 64.5
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 0.0e+00 2129.8 2296 63.2
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 0.0e+00 2125.1 2262 64.3
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1483.4 2501 46.7
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 1483.0 2489 46.0
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 1448.7 2505 45.4
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 1437.6 2530 46.5
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1436.0 2499 45.5
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 1422.9 2527 44.9
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 1392.9 2504 45.1
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1374.4 2497 44.3
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1364.0 2499 44.1
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1359.0 2535 43.8
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1358.2 2497 44.3
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1357.8 2494 44.2
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 1357.4 2479 44.0
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1345.9 2488 43.7
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1332.0 2534 43.5
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1326.6 2490 44.3
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1319.3 2490 43.6
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 1315.8 2508 43.8
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1309.3 2490 43.7
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1303.5 2497 43.5
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1303.1 2501 43.6
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1303.1 2495 42.4
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1302.0 2493 43.4
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1296.2 2515 43.1
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1296.2 2465 43.5
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 1295.4 2554 42.7
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1293.1 2473 44.2
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1279.6 2561 42.6
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1278.5 2561 42.5
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1269.6 2557 42.3
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1267.7 2481 42.8
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1265.4 2486 43.9
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1236.1 2439 43.6
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1236.1 2470 41.5
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1231.1 2535 41.5
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1228.8 2493 42.4
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1228.4 2347 43.0
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1220.7 2483 42.6
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1199.9 2538 41.5
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 1198.7 2501 41.1
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1188.7 2153 44.7
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1187.6 2486 42.4
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1177.5 2490 41.8
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1176.0 2441 42.3
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1164.4 2458 41.5
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1162.1 2438 41.5
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1160.6 2295 44.0
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1158.7 2492 42.0
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1154.0 2499 41.3
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1146.3 2505 41.3
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1143.3 2478 41.0
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1142.5 2534 40.9
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1134.0 2391 40.4
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1134.0 2483 41.4
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1128.6 2506 41.4
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1122.5 2503 40.9
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1117.8 2428 40.4
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1115.5 2504 41.2
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1115.5 2447 41.9
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1106.3 2435 42.5
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1102.4 2455 41.4
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1098.2 2641 40.2
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1094.7 2339 40.4
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1094.3 2520 39.2
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1088.9 2449 39.3
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1085.5 2475 40.9
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1076.2 2543 38.1
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 5.2e-310 1068.9 2495 40.2
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 1.1e-307 1061.2 2418 39.9
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 1.4e-307 1060.8 2439 40.1
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 5.4e-307 1058.9 2446 40.5
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 5.4e-307 1058.9 2515 39.7
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 1.1e-304 1051.2 2449 40.6
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 2.0e-301 1040.4 2402 40.0
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 1.3e-300 1037.7 2006 43.7
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.4e-299 1034.2 2416 39.5
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 1.6e-298 1030.8 2485 39.9
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 3.0e-297 1026.5 2365 40.1
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 1.9e-296 1023.8 1868 44.5
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 1.7e-292 1010.7 2404 39.6
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 2.2e-292 1010.4 2489 39.4
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 2.7e-290 1003.4 2360 40.0
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 8.4e-284 981.9 2351 39.9
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 1.6e-274 951.0 2459 39.1
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 9.6e-272 941.8 2455 38.5
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 1.6e-271 941.0 2324 39.4
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 1.3e-265 921.4 2264 37.7
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 3.2e-259 900.2 2427 37.2
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 1.6e-258 897.9 2558 35.6
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 2.8e-239 833.9 2494 35.4
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 7.7e-221 772.7 2566 35.0
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 1.3e-215 755.4 1632 42.0
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 3.5e-205 720.7 1736 37.6
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 2.1e-194 684.9 957 48.6
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 3.6e-194 684.1 1074 49.0
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 3.0e-180 637.9 2473 33.0
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 1.1e-177 629.4 1025 48.2
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 3.0e-172 611.3 1264 40.3
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 1.3e-164 585.9 2456 32.7
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 1.5e-160 572.4 2427 33.1
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 5.7e-123 447.6 939 43.9
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 4.5e-120 438.0 2286 30.5
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 4.2e-118 431.4 1883 33.4
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 5.5e-118 431.0 976 41.0
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 8.8e-116 423.7 1728 30.6
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 2.3e-108 399.1 715 44.1
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 1.8e-89 336.3 503 47.9
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 9.5e-86 323.9 571 48.0
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 5.0e-79 301.6 1301 33.2
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 1.6e-77 296.6 439 47.6
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 1.8e-76 293.1 1728 29.9
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 1.8e-68 266.5 909 33.4
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 6.8e-68 264.6 726 35.7
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.7e-63 250.0 1016 30.7
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 5.2e-60 238.4 2730 26.0
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 5.1e-55 221.9 466 40.3
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 9.0e-52 211.1 754 32.5
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 3.8e-50 205.7 243 51.4
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 2.4e-49 203.0 2238 26.2
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 1.1e-46 194.1 253 51.8
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 8.1e-45 188.0 253 51.0
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.7e-42 180.3 980 32.6
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 3.5e-40 172.6 350 36.9
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.7e-34 153.7 2623 25.5
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 3.2e-33 149.4 501 31.7
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 4.2e-33 149.1 2538 25.8
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 4.1e-28 132.5 2517 25.6
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 2.1e-24 120.2 789 26.6
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 3.6e-24 119.4 429 29.1
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 4.3e-22 112.5 153 49.7
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 1.3e-21 110.9 184 45.1
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.1e-17 97.8 74 62.2
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.4e-15 90.9 211 40.3
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 3.8e-10 72.8 136 41.2
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 8.5e-10 71.6 85 57.6
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 1.1e-09 71.2 2090 26.6
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 9.4e-09 68.2 74 55.4
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 7.9e-08 65.1 321 29.6
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 1.5e-06 60.8 55 56.4


User provided reference genes

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