Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g11650 Schrenkiella parvula HOM05D005038 ORTHO05D006055 5.5e-153 544.3 275 100.0
AL5G30700 Arabidopsis lyrata HOM05D005038 ORTHO05D006055 2.0e-147 525.8 274 96.4
BcaB05g23223 Brassica carinata HOM05D005038 ORTHO05D006055 2.0e-147 525.8 275 95.6
BraA01t02316Z Brassica rapa HOM05D005038 ORTHO05D006055 2.6e-147 525.4 275 96.4
A01p24040 Brassica napus HOM05D005038 ORTHO05D006055 7.7e-147 523.9 275 96.0
BcaB01g00609 Brassica carinata HOM05D005038 ORTHO05D006055 2.2e-146 522.3 275 95.6
BcaC09g50037 Brassica carinata HOM05D005038 ORTHO05D006055 2.2e-146 522.3 275 96.0
C01p29730 Brassica napus HOM05D005038 ORTHO05D006055 2.2e-146 522.3 275 96.0
BolC1t02913H Brassica oleracea HOM05D005038 ORTHO05D006055 2.2e-146 522.3 275 96.0
Thhalv10010624m.g Eutrema salsugineum HOM05D005038 ORTHO05D006055 2.9e-146 521.9 275 95.6
BolC8t50181H Brassica oleracea HOM05D005038 ORTHO05D006055 1.2e-144 516.5 275 94.2
BcaC07g39516 Brassica carinata HOM05D005038 ORTHO05D006055 1.6e-144 516.2 275 93.8
A09p43580 Brassica napus HOM05D005038 ORTHO05D006055 2.7e-144 515.4 275 93.8
Carub.0005s1688 Capsella rubella HOM05D005038 ORTHO05D006055 2.7e-144 515.4 276 94.9
C08p25620 Brassica napus HOM05D005038 ORTHO05D006055 6.1e-144 514.2 275 93.8
AT3G50560 Arabidopsis thaliana HOM05D005038 ORTHO05D006055 1.0e-143 513.5 275 94.5
Aa31LG4G18730 Aethionema arabicum HOM05D005038 ORTHO05D006055 7.5e-118 427.6 279 82.8
THA.LOC104821271 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 6.5e-114 414.5 273 81.3
THA.LOC104827003 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 1.4e-108 396.7 277 75.8
BraA09t39820Z Brassica rapa HOM05D005038 ORTHO05D006055 2.3e-106 389.4 211 93.8
Gohir.D11G196900 Gossypium hirsutum HOM05D005038 ORTHO05D006055 2.5e-105 386.0 273 74.0
Gorai.007G210800 Gossypium raimondii HOM05D005038 ORTHO05D006055 5.5e-105 384.8 273 74.0
Duzib147G1247 Durio zibethinus HOM05D005038 ORTHO05D006055 2.8e-104 382.5 273 73.6
Gohir.A11G190200 Gossypium hirsutum HOM05D005038 ORTHO05D006055 2.8e-104 382.5 275 74.2
Thecc.01G052200 Theobroma cacao HOM05D005038 ORTHO05D006055 3.6e-104 382.1 273 73.3
Duzib264G0221 Durio zibethinus HOM05D005038 ORTHO05D006055 8.0e-104 380.9 273 72.9
CARHR160070 Cardamine hirsuta HOM05D005038 ORTHO05D006055 1.5e-102 376.7 207 94.2
Atru.chr3.399 Acer truncatum HOM05D005038 ORTHO05D006055 1.7e-101 373.2 273 71.8
Potri.005G136200 Populus trichocarpa HOM05D005038 ORTHO05D006055 3.7e-101 372.1 269 72.9
Haze_15429 Corylus avellana HOM05D005038 ORTHO05D006055 1.1e-100 370.5 274 70.4
Sabra05G0108900 Salix brachista HOM05D005038 ORTHO05D006055 1.8e-100 369.8 269 71.7
Manes.13G126100 Manihot esculenta HOM05D005038 ORTHO05D006055 4.1e-100 368.6 267 72.3
COL.COLO4_11379 Corchorus olitorius HOM05D005038 ORTHO05D006055 1.2e-99 367.1 273 70.3
QL06p042351 Quercus lobata HOM05D005038 ORTHO05D006055 1.2e-99 367.1 274 71.2
arahy.Tifrunner.gnm1.ann1.MSK3BR Arachis hypogaea HOM05D005038 ORTHO05D006055 3.5e-99 365.5 281 68.3
Cpa.g.sc6.381 Carica papaya HOM05D005038 ORTHO05D006055 1.0e-98 364.0 273 70.0
Ciclev10026264m.g Citrus clementina HOM05D005038 ORTHO05D006055 1.3e-98 363.6 271 70.5
CiPaw.01G021700 Carya illinoinensis HOM05D005038 ORTHO05D006055 2.9e-98 362.5 270 69.6
PGR102G3322 Punica granatum HOM05D005038 ORTHO05D006055 8.6e-98 360.9 273 70.7
arahy.Tifrunner.gnm1.ann1.S4TQX4 Arachis hypogaea HOM05D005038 ORTHO05D006055 3.3e-97 359.0 279 68.1
Eucgr.H01997 Eucalyptus grandis HOM05D005038 ORTHO05D006055 4.3e-97 358.6 288 66.3
Sed0007672 Sechium edule HOM05D005038 ORTHO05D006055 4.3e-97 358.6 280 67.9
TWI09G0447 Tripterygium wilfordii HOM05D005038 ORTHO05D006055 4.3e-97 358.6 274 69.7
ClCG01G016690 Citrullus lanatus HOM05D005038 ORTHO05D006055 5.6e-97 358.2 278 69.1
CsaV3_6G043110 Cucumis sativus L. HOM05D005038 ORTHO05D006055 1.2e-96 357.1 275 68.4
Hma1.2p1_0047F.1_g027670 Hydrangea macrophylla HOM05D005038 ORTHO05D006055 2.1e-96 356.3 273 68.1
MELO3C007547.2 Cucumis melo HOM05D005038 ORTHO05D006055 2.8e-96 355.9 278 68.3
Nn5g30191 Nelumbo nucifera HOM05D005038 ORTHO05D006055 3.6e-96 355.5 273 69.2
Glyma.11G057800 Glycine max HOM05D005038 ORTHO05D006055 8.0e-96 354.4 274 67.5
VMungo0251G1314 Vigna mungo HOM05D005038 ORTHO05D006055 8.0e-96 354.4 268 68.3
CANSAT01G0585 Cannabis sativa HOM05D005038 ORTHO05D006055 1.4e-95 353.6 274 66.4
Lj4g0011946 Lotus japonicus HOM05D005038 ORTHO05D006055 2.3e-95 352.8 273 67.8
ECA238G0061 Erigeron canadensis HOM05D005038 ORTHO05D006055 3.1e-95 352.4 274 67.5
TAR628G1256 Trochodendron aralioides HOM05D005038 ORTHO05D006055 6.8e-95 351.3 272 70.2
Potri.007G040900 Populus trichocarpa HOM05D005038 ORTHO05D006055 1.2e-94 350.5 271 69.7
Aqoxy5G01298 Aquilegia oxysepala HOM05D005038 ORTHO05D006055 1.5e-94 350.1 273 67.4
Gorai.011G105100 Gossypium raimondii HOM05D005038 ORTHO05D006055 1.5e-94 350.1 275 67.6
CSS0034792 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 2.0e-94 349.7 273 67.8
Gohir.A10G092400 Gossypium hirsutum HOM05D005038 ORTHO05D006055 2.0e-94 349.7 275 67.3
Lalb_Chr05g0226661 Lupinus albus HOM05D005038 ORTHO05D006055 4.4e-94 348.6 274 69.0
Sopen02g015220 Solanum pennellii HOM05D005038 ORTHO05D006055 4.4e-94 348.6 273 67.4
Lj2g0014661 Lotus japonicus HOM05D005038 ORTHO05D006055 9.8e-94 347.4 275 67.6
Nitab4.5_0000310g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 9.8e-94 347.4 275 67.6
FvH4_1g15680 Fragaria vesca HOM05D005038 ORTHO05D006055 1.3e-93 347.1 270 65.2
Glyma.05G090600 Glycine max HOM05D005038 ORTHO05D006055 2.2e-93 346.3 278 66.2
FAN19G2696 Fragaria x ananassa HOM05D005038 ORTHO05D006055 2.9e-93 345.9 270 65.2
Glyma.17G176200 Glycine max HOM05D005038 ORTHO05D006055 2.9e-93 345.9 273 66.7
CAN.G165.30 Capsicum annuum HOM05D005038 ORTHO05D006055 3.7e-93 345.5 273 65.9
PGSC0003DMG400000767 Solanum tuberosum HOM05D005038 ORTHO05D006055 3.7e-93 345.5 271 66.4
CSS0005034 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 4.9e-93 345.1 274 65.3
Medtr8g079810 Medicago truncatula HOM05D005038 ORTHO05D006055 4.9e-93 345.1 263 68.8
PSO170G1702 Papaver somniferum HOM05D005038 ORTHO05D006055 4.9e-93 345.1 295 62.7
CiPaw.02G009600 Carya illinoinensis HOM05D005038 ORTHO05D006055 6.4e-93 344.7 269 68.8
Lsat_1_v5_gn_2_84360 Lactuca sativa HOM05D005038 ORTHO05D006055 8.3e-93 344.4 274 66.8
Psat4g087880 Pisum sativum HOM05D005038 ORTHO05D006055 1.1e-92 344.0 269 68.8
RcHm_v2.0_Chr2g0104991 Rosa chinensis HOM05D005038 ORTHO05D006055 1.1e-92 344.0 270 67.0
Hund16340 Selenicereus undatus HOM05D005038 ORTHO05D006055 1.1e-92 344.0 264 68.2
Solyc02g065060.3 Solanum lycopersicum HOM05D005038 ORTHO05D006055 1.1e-92 344.0 273 66.3
Prupe.7G136500 Prunus persica HOM05D005038 ORTHO05D006055 1.4e-92 343.6 275 66.5
Migut.H00455 Erythranthe guttata HOM05D005038 ORTHO05D006055 1.9e-92 343.2 274 66.8
MD02G1168700 Malus domestica HOM05D005038 ORTHO05D006055 1.9e-92 343.2 274 65.7
MSTRG.23767 Avicennia marina HOM05D005038 ORTHO05D006055 2.4e-92 342.8 272 67.3
Solyc02g090540.4 Solanum lycopersicum HOM05D005038 ORTHO05D006055 2.4e-92 342.8 273 66.7
Gohir.D10G095800 Gossypium hirsutum HOM05D005038 ORTHO05D006055 3.2e-92 342.4 275 65.8
HanXRQChr03g0061121 Helianthus annuus HOM05D005038 ORTHO05D006055 1.6e-91 340.1 274 66.8
Nitab4.5_0000728g0080 Nicotiana tabacum HOM05D005038 ORTHO05D006055 3.5e-91 339.0 273 65.9
PGSC0003DMG400010021 Solanum tuberosum HOM05D005038 ORTHO05D006055 3.5e-91 339.0 275 66.2
Sabra07G0036600 Salix brachista HOM05D005038 ORTHO05D006055 6.0e-91 338.2 286 65.7
FAN23G2750 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.0e-90 337.4 285 61.8
Sopen02g035200 Solanum pennellii HOM05D005038 ORTHO05D006055 1.0e-90 337.4 273 65.9
CAN.G836.64 Capsicum annuum HOM05D005038 ORTHO05D006055 1.3e-90 337.0 269 65.4
TAR376G0303 Trochodendron aralioides HOM05D005038 ORTHO05D006055 1.7e-90 336.7 271 68.6
FAN28G2421 Fragaria x ananassa HOM05D005038 ORTHO05D006055 6.6e-90 334.7 285 61.4
FAN26G2456 Fragaria x ananassa HOM05D005038 ORTHO05D006055 8.6e-90 334.3 285 61.4
FAN28G1979 Fragaria x ananassa HOM05D005038 ORTHO05D006055 8.6e-90 334.3 285 61.4
Nn1g05863 Nelumbo nucifera HOM05D005038 ORTHO05D006055 1.1e-89 334.0 264 66.7
Lalb_Chr16g0378421 Lupinus albus HOM05D005038 ORTHO05D006055 1.5e-89 333.6 273 63.4
HanXRQChr14g0448271 Helianthus annuus HOM05D005038 ORTHO05D006055 1.9e-89 333.2 274 64.6
PSO017G3935 Papaver somniferum HOM05D005038 ORTHO05D006055 1.9e-89 333.2 297 61.3
Cc07_g05830 Coffea canephora HOM05D005038 ORTHO05D006055 4.3e-89 332.0 275 64.4
Hund13568 Selenicereus undatus HOM05D005038 ORTHO05D006055 4.3e-89 332.0 264 65.9
VMungo1215G2888 Vigna mungo HOM05D005038 ORTHO05D006055 4.7e-88 328.6 281 62.6
Phvul.002G020600 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 2.3e-87 326.2 274 62.4
TPR.G19012 Trifolium pratense HOM05D005038 ORTHO05D006055 2.3e-87 326.2 243 70.8
Peaxi162Scf00049g00149 Petunia axillaris HOM05D005038 ORTHO05D006055 2.0e-86 323.2 274 63.9
Oeu021840.1 Olea europaea HOM05D005038 ORTHO05D006055 9.8e-86 320.9 283 61.8
AUR62003853 Chenopodium quinoa HOM05D005038 ORTHO05D006055 2.9e-85 319.3 275 62.9
Lj7C62T0 Lonicera japonica HOM05D005038 ORTHO05D006055 3.7e-85 318.9 270 64.4
Rhsim08G0102300 Rhododendron simsii HOM05D005038 ORTHO05D006055 4.9e-85 318.5 270 64.8
PSO675G5181 Papaver somniferum HOM05D005038 ORTHO05D006055 6.4e-85 318.2 292 60.3
PSO732G0767 Papaver somniferum HOM05D005038 ORTHO05D006055 3.0e-82 309.3 291 57.4
PSO675G1229 Papaver somniferum HOM05D005038 ORTHO05D006055 3.9e-82 308.9 286 60.5
ATR0097G001 Amborella trichopoda HOM05D005038 ORTHO05D006055 5.1e-82 308.5 259 64.1
Lj4A139T89 Lonicera japonica HOM05D005038 ORTHO05D006055 6.6e-82 308.1 280 62.5
Peaxi162Scf00916g00134 Petunia axillaris HOM05D005038 ORTHO05D006055 3.3e-81 305.8 273 61.5
SEGI_27725 Sequoiadendron giganteum HOM05D005038 ORTHO05D006055 8.1e-80 301.2 263 60.1
GSVIVG01006576001 Vitis vinifera HOM05D005038 ORTHO05D006055 8.1e-80 301.2 218 75.2
PSO675G4848 Papaver somniferum HOM05D005038 ORTHO05D006055 4.4e-78 295.4 286 60.1
Nitab4.5_0000440g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 1.3e-77 293.9 206 75.2
Dinv39876 Davidia involucrata HOM05D005038 ORTHO05D006055 2.9e-77 292.7 207 74.9
Os08g0476300 Oryza sativa ssp. japonica HOM05D005038 ORTHO05D006055 4.9e-77 292.0 271 58.3
PSO541G2053 Papaver somniferum HOM05D005038 ORTHO05D006055 1.4e-76 290.4 286 59.4
CDE03G0279 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 1.9e-76 290.0 269 59.5
EL10Ac6g15150 Beta vulgaris HOM05D005038 ORTHO05D006055 1.3e-74 283.9 274 58.8
Actinidia16508 Actinidia chinensis HOM05D005038 ORTHO05D006055 1.7e-74 283.5 231 66.2
vmacro17934 Vaccinium macrocarpon HOM05D005038 ORTHO05D006055 1.9e-73 280.0 226 65.0
Lj7C59T8 Lonicera japonica HOM05D005038 ORTHO05D006055 6.0e-67 258.5 286 53.5
Pp3c25_14660 Physcomitrium patens HOM05D005038 ORTHO05D006055 3.3e-65 252.7 267 52.1
SMO364G0608 Selaginella moellendorffii HOM05D005038 ORTHO05D006055 7.3e-65 251.5 262 52.7
Nitab4.5_0013126g0010 Nicotiana tabacum HOM05D005038 ORTHO05D006055 5.4e-60 235.3 168 73.8
Mapoly0021s0094 Marchantia polymorpha HOM05D005038 ORTHO05D006055 7.1e-60 235.0 262 50.4
Zm00001eb038220 Zea mays HOM05D005038 ORTHO05D006055 9.3e-60 234.6 217 59.4
Phvul.003G245900 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 2.3e-58 229.9 179 70.9
Lalb_Chr16g0378241 Lupinus albus HOM05D005038 ORTHO05D006055 2.0e-54 216.9 172 66.9
SGA_v2.0_scaffold15G07261 Striga asiatica HOM05D005038 ORTHO05D006055 2.9e-53 213.0 286 44.8
Dinv29965 Davidia involucrata HOM05D005038 ORTHO05D006055 9.0e-47 191.4 190 57.9
AUR62001954 Chenopodium quinoa HOM05D005038 ORTHO05D006055 1.3e-42 177.6 131 67.9
MSTRG.2897 Avicennia marina HOM05D005038 ORTHO05D006055 1.9e-36 157.1 127 61.4
Mapoly0010s0198 Marchantia polymorpha HOM05D005038 ORTHO05D006055 1.3e-29 134.4 256 32.8
Pp3c4_31290 Physcomitrium patens HOM05D005038 ORTHO05D006055 1.3e-29 134.4 257 35.4
arahy.Tifrunner.gnm1.ann1.647UNH Arachis hypogaea HOM05D005038 ORTHO05D006055 1.6e-27 127.5 85 77.6
CDE06G1667 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 5.9e-22 109.0 110 50.9
PRCOL_00004339 Prasinoderma coloniale HOM05D005038 ORTHO05D006055 9.4e-12 75.1 192 28.6
Zm00001eb080970 Zea mays HOM05D002673 ORTHO05D002766 3.3e-09 66.6 178 31.5
PGR119G1630 Punica granatum HOM05D001489 ORTHO05D001380 7.5e-09 65.5 183 27.3
SGA_v2.0_scaffold166G38366 Striga asiatica HOM05D003236 ORTHO05D003620 7.5e-09 65.5 184 31.0
Nitab4.5_0013126g0020 Nicotiana tabacum HOM05D005038 ORTHO05D006055 9.7e-09 65.1 62 50.0
unitig_747.g21751 Utricularia gibba HOM05D002673 ORTHO05D002766 6.3e-08 62.4 174 29.3
MSTRG.23328 Avicennia marina HOM05D002673 ORTHO05D002766 1.1e-07 61.6 188 26.6
Solyc06g054330.3 Solanum lycopersicum HOM05D003236 ORTHO05D003620 1.1e-07 61.6 183 28.4
Sopen01g016440 Solanum pennellii HOM05D003236 ORTHO05D003620 1.1e-07 61.6 185 28.1
Sopen06g019440 Solanum pennellii HOM05D003236 ORTHO05D003620 1.8e-07 60.8 183 28.4
ECA248G2845 Erigeron canadensis HOM05D003236 ORTHO05D003620 2.4e-07 60.5 183 29.0
Rhsim08G0008300 Rhododendron simsii HOM05D002673 ORTHO05D002766 3.1e-07 60.1 188 26.6
Lalb_Chr23g0277261 Lupinus albus HOM05D002673 ORTHO05D002766 5.3e-07 59.3 191 30.4
Migut.N00158 Erythranthe guttata HOM05D003236 ORTHO05D003620 7.0e-07 58.9 208 26.0
HanXRQChr10g0286501 Helianthus annuus HOM05D003236 ORTHO05D003620 1.6e-06 57.8 209 25.8
Manes.08G075500 Manihot esculenta HOM05D003236 ORTHO05D003620 1.6e-06 57.8 183 28.4
Aqoxy2G03298 Aquilegia oxysepala HOM05D003236 ORTHO05D003620 2.0e-06 57.4 208 26.0
Gorai.N027600 Gossypium raimondii HOM05D003236 ORTHO05D003620 2.0e-06 57.4 183 25.7
CANSAT56G0357 Cannabis sativa HOM05D003236 ORTHO05D003620 2.7e-06 57.0 207 26.6
MBI17_g13566_MAGBIO Magnolia biondii HOM05D003236 ORTHO05D003620 2.7e-06 57.0 230 27.8
Hund19506 Selenicereus undatus HOM05D003236 ORTHO05D003620 2.7e-06 57.0 184 28.3
Cre17.g702750 Chlamydomonas reinhardtii HOM05D003236 ORTHO05D003620 3.5e-06 56.6 184 25.0
Ca_16551_v3 Cicer arietinum L. HOM05D002673 ORTHO05D002766 3.5e-06 56.6 188 26.6
MBI17_g40447_MAGBIO Magnolia biondii HOM05D000182 ORTHO05D000112 3.5e-06 56.6 234 26.5
FAN08G2949 Fragaria x ananassa HOM05D003236 ORTHO05D003620 4.5e-06 56.2 220 26.8
Gohir.D05G232800 Gossypium hirsutum HOM05D003236 ORTHO05D003620 4.5e-06 56.2 183 25.1
TWI53G0183 Tripterygium wilfordii HOM05D003236 ORTHO05D003620 4.5e-06 56.2 184 27.2
FvH4_4g14820 Fragaria vesca HOM05D003236 ORTHO05D003620 5.9e-06 55.8 221 26.7
FAN12G2674 Fragaria x ananassa HOM05D003236 ORTHO05D003620 5.9e-06 55.8 221 26.7
RcHm_v2.0_Chr4g0417501 Rosa chinensis HOM05D003236 ORTHO05D003620 5.9e-06 55.8 200 26.5
SalBow2G2662 Salvia bowleyana HOM05D003236 ORTHO05D003620 5.9e-06 55.8 184 26.1
Sed0015061 Sechium edule HOM05D000904 ORTHO05D005281 5.9e-06 55.8 183 23.0
FAN04G3165 Fragaria x ananassa HOM05D003236 ORTHO05D003620 7.7e-06 55.5 220 26.4
HanXRQChr11g0351171 Helianthus annuus HOM05D003236 ORTHO05D003620 7.7e-06 55.5 204 25.5
Lsat_1_v5_gn_1_50180 Lactuca sativa HOM05D003236 ORTHO05D003620 7.7e-06 55.5 200 25.5


User provided reference genes

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