Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g11590 Schrenkiella parvula HOM05D010645 ORTHO05D000724 1.4e-112 409.8 235 100.0
Thhalv10010715m.g Eutrema salsugineum HOM05D010645 ORTHO05D000724 2.7e-68 262.7 200 78.5
BcaC06g33308 Brassica carinata HOM05D010645 ORTHO05D000724 2.3e-67 259.6 236 64.8
C07p45820 Brassica napus HOM05D010645 ORTHO05D000724 2.3e-67 259.6 236 64.8
BolC7t45103H Brassica oleracea HOM05D010645 ORTHO05D000724 2.3e-67 259.6 236 64.8
BraA03t13894Z Brassica rapa HOM05D010645 ORTHO05D000724 8.7e-67 257.7 236 65.3
A03p47840 Brassica napus HOM05D010645 ORTHO05D000724 3.3e-66 255.8 236 64.4
CARHR160140 Cardamine hirsuta HOM05D010645 ORTHO05D000724 4.2e-61 238.8 198 73.2
BcaC06g33088 Brassica carinata HOM05D010645 ORTHO05D000724 7.4e-58 228.0 236 59.3
AL5G30770 Arabidopsis lyrata HOM05D010645 ORTHO05D000724 4.0e-43 179.1 204 59.3
Carub.0005s1695 Capsella rubella HOM05D010645 ORTHO05D000724 3.7e-41 172.6 199 56.8
THA.LOC104826988 Tarenaya hassleriana HOM05D010645 ORTHO05D000724 2.9e-30 136.3 241 42.3
Aa31LG4G18800 Aethionema arabicum HOM05D010645 ORTHO05D000724 9.5e-29 131.3 242 44.2
BcaC07g39524 Brassica carinata HOM05D010645 ORTHO05D000724 4.7e-28 129.0 109 66.1
AT3G50630 Arabidopsis thaliana HOM05D010645 ORTHO05D000724 3.0e-27 126.3 176 51.7
C08p25700 Brassica napus HOM05D010645 ORTHO05D000724 3.4e-26 122.9 109 65.1
A09p43650 Brassica napus HOM05D010645 ORTHO05D000724 1.3e-25 120.9 146 53.4
BcaC06g33311 Brassica carinata HOM05D010645 ORTHO05D000724 1.1e-21 107.8 71 80.3
THA.LOC104821273 Tarenaya hassleriana HOM05D010645 ORTHO05D000724 4.9e-17 92.4 194 42.3
Dinv29977 Davidia involucrata HOM05D000988 ORTHO05D000724 2.5e-13 80.1 162 37.7
GSVIVG01022145001 Vitis vinifera HOM05D000988 ORTHO05D000724 7.3e-13 78.6 153 39.9
MD02G1170300 Malus domestica HOM05D000988 ORTHO05D000724 1.6e-12 77.4 166 36.7
CARHR293050 Cardamine hirsuta HOM05D000988 ORTHO05D000724 2.1e-12 77.0 179 36.9
Gohir.A11G191100 Gossypium hirsutum HOM05D000988 ORTHO05D000724 2.1e-12 77.0 179 36.9
FAN23G0955 Fragaria x ananassa HOM05D000988 ORTHO05D000724 3.6e-12 76.3 156 37.8
Eucgr.H02008 Eucalyptus grandis HOM05D000988 ORTHO05D000724 6.2e-12 75.5 204 32.8
Dinv39865 Davidia involucrata HOM05D000988 ORTHO05D000724 8.0e-12 75.1 146 38.4
FvH4_1g15820 Fragaria vesca HOM05D000988 ORTHO05D000724 8.0e-12 75.1 156 36.5
FAN19G1762 Fragaria x ananassa HOM05D000988 ORTHO05D000724 8.0e-12 75.1 156 37.2
FAN26G1516 Fragaria x ananassa HOM05D000988 ORTHO05D000724 8.0e-12 75.1 156 37.2
Cpa.g.sc55.167 Carica papaya HOM05D000988 ORTHO05D000724 1.0e-11 74.7 155 36.8
Thecc.01G054100 Theobroma cacao HOM05D000988 ORTHO05D000724 1.0e-11 74.7 179 35.8
Cc07_g05910 Coffea canephora HOM05D000988 ORTHO05D000724 1.4e-11 74.3 215 31.2
Gorai.007G211800 Gossypium raimondii HOM05D000988 ORTHO05D000724 1.8e-11 73.9 179 36.9
FAN28G2662 Fragaria x ananassa HOM05D000988 ORTHO05D000724 2.3e-11 73.6 153 37.9
Duzib147G1455 Durio zibethinus HOM05D000988 ORTHO05D000724 3.1e-11 73.2 153 37.3
CSS0047121 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 4.0e-11 72.8 142 40.8
RcHm_v2.0_Chr2g0105111 Rosa chinensis HOM05D000988 ORTHO05D000724 4.0e-11 72.8 178 34.8
CSS0048797 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 5.2e-11 72.4 189 34.4
arahy.Tifrunner.gnm1.ann1.C2Y005 Arachis hypogaea HOM05D000988 ORTHO05D000724 6.8e-11 72.0 156 35.9
MSTRG.15394 Avicennia marina HOM05D000988 ORTHO05D000724 8.9e-11 71.6 178 30.3
TWI09G0765 Tripterygium wilfordii HOM05D000988 ORTHO05D000724 8.9e-11 71.6 191 35.1
Gohir.D11G197900 Gossypium hirsutum HOM05D000988 ORTHO05D000724 1.2e-10 71.2 176 36.4
Psat2g166040 Pisum sativum HOM05D000988 ORTHO05D000724 1.2e-10 71.2 202 34.2
Potri.007G042300 Populus trichocarpa HOM05D000988 ORTHO05D000724 1.2e-10 71.2 200 33.0
Actinidia36500 Actinidia chinensis HOM05D000988 ORTHO05D000724 1.5e-10 70.9 170 39.4
Prupe.7G135000 Prunus persica HOM05D000988 ORTHO05D000724 1.5e-10 70.9 143 36.4
Manes.13G127100 Manihot esculenta HOM05D000988 ORTHO05D000724 2.0e-10 70.5 150 34.0
Glyma.05G085000 Glycine max HOM05D000988 ORTHO05D000724 2.6e-10 70.1 151 36.4
Manes.12G103100 Manihot esculenta HOM05D000988 ORTHO05D000724 2.6e-10 70.1 153 34.6
QL06p041825 Quercus lobata HOM05D000988 ORTHO05D000724 2.6e-10 70.1 152 36.2
AL4G13370 Arabidopsis lyrata HOM05D000988 ORTHO05D000724 3.4e-10 69.7 186 34.4
Oeu050777.1 Olea europaea HOM05D000988 ORTHO05D000724 3.4e-10 69.7 190 32.1
Ciclev10026517m.g Citrus clementina HOM05D000988 ORTHO05D000724 5.8e-10 68.9 159 36.5
Glyma.01G185400 Glycine max HOM05D000988 ORTHO05D000724 5.8e-10 68.9 154 37.0
Actinidia00450 Actinidia chinensis HOM05D000988 ORTHO05D000724 1.7e-09 67.4 138 37.7
Duzib187G2011 Durio zibethinus HOM05D000988 ORTHO05D000724 1.7e-09 67.4 134 37.3
Phvul.003G244700 Phaseolus vulgaris HOM05D000988 ORTHO05D000724 1.7e-09 67.4 208 32.2
SalBow5G1305 Salvia bowleyana HOM05D000988 ORTHO05D000724 1.7e-09 67.4 180 35.6
SalBow5G4663 Salvia bowleyana HOM05D000988 ORTHO05D000724 1.7e-09 67.4 180 35.6
Ca_24777_v3 Cicer arietinum L. HOM05D000988 ORTHO05D000724 3.7e-09 66.2 146 37.7
Glyma.11G056700 Glycine max HOM05D000988 ORTHO05D000724 4.9e-09 65.9 154 35.7
Hund16333 Selenicereus undatus HOM05D000988 ORTHO05D000724 4.9e-09 65.9 184 32.6
Sopen02g035320 Solanum pennellii HOM05D000988 ORTHO05D000724 4.9e-09 65.9 177 33.9
Carub.0001s3882 Capsella rubella HOM05D000988 ORTHO05D000724 6.4e-09 65.5 154 35.1
Migut.K00762 Erythranthe guttata HOM05D000988 ORTHO05D000724 6.4e-09 65.5 199 28.6
Gorai.008G074800 Gossypium raimondii HOM05D000988 ORTHO05D000724 8.3e-09 65.1 134 37.3
Gohir.A12G070500 Gossypium hirsutum HOM05D000988 ORTHO05D000724 1.1e-08 64.7 167 34.1
TWI73G0652 Tripterygium wilfordii HOM05D000988 ORTHO05D000724 1.1e-08 64.7 185 35.7
Atru.chr3.348 Acer truncatum HOM05D000988 ORTHO05D000724 1.4e-08 64.3 179 32.4
Oeu021555.1 Olea europaea HOM05D000988 ORTHO05D000724 1.9e-08 63.9 131 35.9
Gohir.D12G088300 Gossypium hirsutum HOM05D000988 ORTHO05D000724 2.4e-08 63.5 177 32.8
Rhsim08G0101500 Rhododendron simsii HOM05D000988 ORTHO05D000724 2.4e-08 63.5 183 30.6
Sp4g02420 Schrenkiella parvula HOM05D000988 ORTHO05D000724 2.4e-08 63.5 150 35.3
AT2G23430 Arabidopsis thaliana HOM05D000988 ORTHO05D000724 3.2e-08 63.2 188 30.9
Solyc02g090680.3 Solanum lycopersicum HOM05D000988 ORTHO05D000724 3.2e-08 63.2 177 33.3
vmacro05330 Vaccinium macrocarpon HOM05D000988 ORTHO05D000724 3.2e-08 63.2 173 31.2
Actinidia12960 Actinidia chinensis HOM05D000988 ORTHO05D000724 4.1e-08 62.8 141 37.6
TPR.G21287 Trifolium pratense HOM05D000988 ORTHO05D000724 4.1e-08 62.8 147 36.7
TAR625G0816 Trochodendron aralioides HOM05D000988 ORTHO05D000724 4.1e-08 62.8 171 33.9
COL.COLO4_11396 Corchorus olitorius HOM05D000988 ORTHO05D000724 5.4e-08 62.4 103 39.8
Glyma.17G175700 Glycine max HOM05D000988 ORTHO05D000724 5.4e-08 62.4 130 38.5
Lalb_Chr16g0378471 Lupinus albus HOM05D000988 ORTHO05D000724 7.0e-08 62.0 156 34.6
Medtr5g017600 Medicago truncatula HOM05D000988 ORTHO05D000724 7.0e-08 62.0 135 38.5
TAR381G0922 Trochodendron aralioides HOM05D000988 ORTHO05D000724 7.0e-08 62.0 152 35.5
Lj4g0023420 Lotus japonicus HOM05D000988 ORTHO05D000724 9.2e-08 61.6 141 35.5
arahy.Tifrunner.gnm1.ann1.CAW15G Arachis hypogaea HOM05D000988 ORTHO05D000724 1.2e-07 61.2 146 35.6
Carub.0003s1897 Capsella rubella HOM05D000988 ORTHO05D000724 1.2e-07 61.2 129 33.3
Carub.0004s0263 Capsella rubella HOM05D000988 ORTHO05D000724 1.2e-07 61.2 49 59.2
Sabra09G0079300 Salix brachista HOM05D000988 ORTHO05D000724 1.2e-07 61.2 138 34.1
Thhalv10000332m.g Eutrema salsugineum HOM05D000988 ORTHO05D000724 1.6e-07 60.8 148 34.5
Phvul.002G019500 Phaseolus vulgaris HOM05D000988 ORTHO05D000724 1.6e-07 60.8 154 33.1
TAR376G0444 Trochodendron aralioides HOM05D000988 ORTHO05D000724 1.6e-07 60.8 155 36.1
CANSAT01G1117 Cannabis sativa HOM05D000988 ORTHO05D000724 2.0e-07 60.5 133 35.3
Cfa004004 Carpinus fangiana HOM05D000988 ORTHO05D000724 2.0e-07 60.5 119 36.1
Lalb_Chr09g0323111 Lupinus albus HOM05D000988 ORTHO05D000724 2.0e-07 60.5 133 34.6
Sc03g0001510 Simmondsia chinensis HOM05D000988 ORTHO05D000724 2.0e-07 60.5 185 29.7
THA.LOC104819843 Tarenaya hassleriana HOM05D000988 ORTHO05D000724 2.0e-07 60.5 144 35.4
MSTRG.23759 Avicennia marina HOM05D000988 ORTHO05D000724 2.7e-07 60.1 187 29.9
CSS0017394 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 2.7e-07 60.1 221 30.8
MD00G1044500 Malus domestica HOM05D000988 ORTHO05D000724 2.7e-07 60.1 108 38.9
Potri.009G103600 Populus trichocarpa HOM05D000988 ORTHO05D000724 3.5e-07 59.7 133 35.3
Gohir.D10G096200 Gossypium hirsutum HOM05D000988 ORTHO05D000724 4.6e-07 59.3 48 58.3
Gorai.011G105400 Gossypium raimondii HOM05D000988 ORTHO05D000724 4.6e-07 59.3 48 58.3
Hma1.2p1_0370F.1_g137940 Hydrangea macrophylla HOM05D000988 ORTHO05D000724 4.6e-07 59.3 168 30.4
Hma1.2p1_0461F.1_g157920 Hydrangea macrophylla HOM05D000988 ORTHO05D000724 4.6e-07 59.3 188 34.0
THA.LOC104814139 Tarenaya hassleriana HOM05D000988 ORTHO05D000724 4.6e-07 59.3 150 34.7
CiPaw.02G008800 Carya illinoinensis HOM05D000988 ORTHO05D000724 6.0e-07 58.9 121 34.7
PGSC0003DMG400015770 Solanum tuberosum HOM05D000988 ORTHO05D000724 6.0e-07 58.9 146 34.2
COL.COLO4_32674 Corchorus olitorius HOM05D000988 ORTHO05D000724 7.8e-07 58.5 176 30.7
AT1G49620 Arabidopsis thaliana HOM05D000988 ORTHO05D000724 1.0e-06 58.2 142 35.9
Ca_19505_v3 Cicer arietinum L. HOM05D000988 ORTHO05D000724 1.0e-06 58.2 58 46.6
Dinv23609 Davidia involucrata HOM05D000988 ORTHO05D000724 1.0e-06 58.2 131 35.1
Actinidia11410 Actinidia chinensis HOM05D000988 ORTHO05D000724 1.3e-06 57.8 46 58.7
Aqoxy5G01265 Aquilegia oxysepala HOM05D000988 ORTHO05D000724 1.3e-06 57.8 190 28.9
ClCG02G012780 Citrullus lanatus HOM05D000988 ORTHO05D000724 1.3e-06 57.8 157 31.8
Rhsim10G0118800 Rhododendron simsii HOM05D000988 ORTHO05D000724 1.3e-06 57.8 192 31.2
unitig_748.g8605 Utricularia gibba HOM05D000988 ORTHO05D000724 1.3e-06 57.8 138 36.2
DCAR_010902 Daucus carota HOM05D000988 ORTHO05D000724 1.7e-06 57.4 133 35.3
Duzib248G0376 Durio zibethinus HOM05D000988 ORTHO05D000724 1.7e-06 57.4 194 28.4
Lj2g0013232 Lotus japonicus HOM05D000988 ORTHO05D000724 1.7e-06 57.4 146 34.2
Psat4g087120 Pisum sativum HOM05D000988 ORTHO05D000724 1.7e-06 57.4 101 36.6
Rhsim11G0166900 Rhododendron simsii HOM05D000988 ORTHO05D000724 1.7e-06 57.4 195 30.8
VMungo0251G3785 Vigna mungo HOM05D000988 ORTHO05D000724 1.7e-06 57.4 205 29.8
Oeu009721.1 Olea europaea HOM05D000988 ORTHO05D000724 2.3e-06 57.0 49 55.1
Potri.004G142100 Populus trichocarpa HOM05D000988 ORTHO05D000724 2.3e-06 57.0 142 32.4
TPR.G10255 Trifolium pratense HOM05D000988 ORTHO05D000724 2.3e-06 57.0 138 36.2
C06p04600 Brassica napus HOM05D000988 ORTHO05D000724 3.0e-06 56.6 183 29.5
CSS0039793 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 3.0e-06 56.6 46 58.7
CiPaw.01G019400 Carya illinoinensis HOM05D000988 ORTHO05D000724 3.0e-06 56.6 122 37.7
Gohir.A10G092200 Gossypium hirsutum HOM05D000988 ORTHO05D000724 3.0e-06 56.6 192 30.7
PGR102G1661 Punica granatum HOM05D000988 ORTHO05D000724 3.0e-06 56.6 157 31.8
Sed0015277 Sechium edule HOM05D000988 ORTHO05D000724 3.0e-06 56.6 140 30.0
Aa31LG7G13560 Aethionema arabicum HOM05D000988 ORTHO05D000724 3.9e-06 56.2 151 34.4
BolC6t35587H Brassica oleracea HOM05D000988 ORTHO05D000724 3.9e-06 56.2 183 30.1
BraA06t23564Z Brassica rapa HOM05D000988 ORTHO05D000724 3.9e-06 56.2 113 35.4
Cfa005471 Carpinus fangiana HOM05D000988 ORTHO05D000724 3.9e-06 56.2 202 27.2
PGSC0003DMG400025821 Solanum tuberosum HOM05D000988 ORTHO05D000724 3.9e-06 56.2 60 46.7
TAR628G0579 Trochodendron aralioides HOM05D000988 ORTHO05D000724 3.9e-06 56.2 196 29.1
AUR62003862 Chenopodium quinoa HOM05D000988 ORTHO05D000724 5.0e-06 55.8 71 40.8
Haze_01841 Corylus avellana HOM05D000988 ORTHO05D000724 5.0e-06 55.8 191 30.4
Haze_01846 Corylus avellana HOM05D000988 ORTHO05D000724 5.0e-06 55.8 191 30.4
Haze_15419 Corylus avellana HOM05D000988 ORTHO05D000724 5.0e-06 55.8 63 44.4
Oeu004831.1 Olea europaea HOM05D000988 ORTHO05D000724 5.0e-06 55.8 195 30.8
Actinidia16502 Actinidia chinensis HOM05D000988 ORTHO05D000724 6.6e-06 55.5 180 34.4
BcaC07g40986 Brassica carinata HOM05D000988 ORTHO05D000724 6.6e-06 55.5 120 35.0
HanXRQChr14g0448261 Helianthus annuus HOM05D000988 ORTHO05D000724 6.6e-06 55.5 137 33.6
Peaxi162Scf00450g00739 Petunia axillaris HOM05D000988 ORTHO05D000724 6.6e-06 55.5 136 33.8
Sp1g36490 Schrenkiella parvula HOM05D000988 ORTHO05D000724 6.6e-06 55.5 139 35.3
VMungo1215G1251 Vigna mungo HOM05D000988 ORTHO05D000724 6.6e-06 55.5 133 33.1
Atru.chr5.2743 Acer truncatum HOM05D000988 ORTHO05D000724 8.6e-06 55.1 145 33.1
A06p03560 Brassica napus HOM05D000988 ORTHO05D000724 8.6e-06 55.1 113 37.2
BolC8t51560H Brassica oleracea HOM05D000988 ORTHO05D000724 8.6e-06 55.1 127 34.6
CiPaw.06G142900 Carya illinoinensis HOM05D000988 ORTHO05D000724 8.6e-06 55.1 138 31.2
HanXRQChr09g0263531 Helianthus annuus HOM05D000988 ORTHO05D000724 8.6e-06 55.1 92 39.1
Nitab4.5_0000033g0440 Nicotiana tabacum HOM05D000988 ORTHO05D000724 8.6e-06 55.1 137 31.4


User provided reference genes

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