Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1431.8 698 100.0
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1395.9 698 97.0
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1380.9 699 95.1
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1379.4 696 95.7
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1377.8 697 94.8
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1376.3 699 94.8
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1367.8 698 94.7
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1359.7 694 94.2
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1355.1 699 93.0
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1342.8 720 91.0
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1278.1 697 87.5
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 0.0e+00 1239.2 696 87.6
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1194.9 695 80.6
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1194.5 695 80.6
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1194.5 695 80.4
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1182.2 692 80.5
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1180.6 695 79.9
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1177.5 695 79.4
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1174.5 695 79.4
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1174.1 695 79.3
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1170.6 696 79.2
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1164.4 698 78.9
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1161.7 695 77.7
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1160.2 695 78.6
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1158.3 695 78.6
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1157.9 695 77.8
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1156.0 695 77.6
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1155.6 695 77.8
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1154.8 695 78.3
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1153.3 695 78.0
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1150.2 696 77.7
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1149.8 696 77.7
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1148.7 700 77.6
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1147.9 692 77.3
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1145.6 695 77.0
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1144.0 695 77.8
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1142.1 696 77.0
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1142.1 694 77.1
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1141.7 695 77.6
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1141.3 696 77.3
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1140.9 698 76.4
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1139.8 694 76.8
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1139.4 695 77.1
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1138.3 695 76.3
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1138.3 695 77.6
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1137.9 697 75.8
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1136.7 696 77.3
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1136.3 695 77.0
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1135.9 695 77.0
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1135.9 696 77.3
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1135.9 722 74.9
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1135.6 695 77.0
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1135.2 696 77.2
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1134.8 697 76.2
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1131.7 697 75.9
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1130.5 695 76.0
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1130.5 696 76.4
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1129.8 695 77.1
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1129.4 694 76.4
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1128.2 695 76.3
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1128.2 674 78.3
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1128.2 695 76.0
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1127.9 694 76.2
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1127.1 695 75.7
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1126.3 695 75.0
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1125.5 697 75.2
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1124.0 698 75.5
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1122.1 695 76.4
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1120.5 697 76.2
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1120.1 696 75.6
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1119.0 695 75.8
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1116.7 695 76.0
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1114.0 696 75.4
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1113.6 696 75.0
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1112.4 695 75.3
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1106.7 696 75.3
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1105.9 697 74.7
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1105.1 695 75.7
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1097.8 695 74.2
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1090.9 693 74.5
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1088.6 719 72.2
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1086.6 696 74.1
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1080.9 695 74.4
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1077.4 748 70.1
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1075.8 697 73.2
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 4.8e-312 1074.3 694 73.6
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 4.8e-312 1073.5 741 70.2
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 9.5e-312 1072.8 697 73.7
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 2.8e-310 1068.1 720 71.1
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 6.8e-309 1063.5 697 71.7
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 1.1e-306 1056.2 648 75.6
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 1.6e-305 1052.4 695 71.9
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 3.5e-305 1051.2 678 72.1
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 2.3e-304 1048.5 696 73.1
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 7.3e-303 1043.5 695 73.2
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.2e-302 1042.7 677 73.1
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 1.6e-302 1042.3 695 73.8
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 8.1e-302 1040.0 612 79.9
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 8.9e-301 1036.6 677 72.4
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 2.9e-291 1005.0 704 68.2
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 5.3e-285 984.2 704 67.3
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 3.8e-283 978.0 582 78.5
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 4.0e-269 931.4 639 70.7
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 8.7e-256 887.1 582 72.2
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 2.5e-255 885.6 709 63.8
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 5.9e-252 874.4 541 77.3
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 1.2e-241 840.1 700 58.9
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.7e-227 793.1 563 68.2
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 2.7e-220 769.2 698 54.0
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 7.7e-220 767.7 703 54.5
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.0e-219 767.3 702 54.8
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.0e-219 767.3 702 54.8
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 1.6e-217 760.0 711 56.0
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.6e-215 752.7 705 53.6
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 2.0e-207 726.5 473 74.0
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 3.1e-176 622.9 387 75.5
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 7.6e-167 591.7 507 64.3
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 1.9e-162 577.0 722 43.6
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 1.0e-147 528.1 377 67.1
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 2.0e-114 417.5 764 36.6
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 1.4e-104 384.8 820 33.8
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 5.0e-102 376.3 248 71.4
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 1.6e-95 354.8 323 55.7
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 2.8e-92 344.0 268 61.6
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 6.1e-92 342.8 253 71.1
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 3.3e-77 293.9 236 68.2
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 3.7e-73 280.4 179 73.2
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 5.4e-72 276.6 166 77.1
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 1.2e-71 275.4 252 56.7
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 2.9e-65 254.2 193 63.7
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 8.6e-62 242.7 622 30.9
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 9.3e-56 222.6 138 84.1
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 1.3e-49 202.2 124 72.6
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 8.1e-44 183.0 97 90.7
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 1.7e-41 175.3 139 64.0
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 2.7e-31 141.4 233 39.1
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 7.9e-31 139.8 75 84.0
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 6.7e-30 136.7 76 80.3
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 3.2e-24 117.9 76 65.8
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 2.2e-17 95.1 85 54.1
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 1.9e-16 92.0 85 56.5
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 1.8e-14 85.5 50 80.0
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 1.5e-13 82.4 50 74.0
MBI01_g27920_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D000004 5.2e-06 57.4 33 75.8


User provided reference genes

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