Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 7.0e-119 430.6 218 100.0
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 1.0e-98 363.6 219 85.8
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 1.0e-98 363.6 219 85.8
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 2.3e-98 362.5 219 85.4
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 5.2e-98 361.3 219 84.9
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 5.2e-98 361.3 219 84.9
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 4.9e-96 354.8 218 85.3
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 1.9e-95 352.8 218 84.9
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 1.7e-93 346.3 220 84.1
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 1.5e-92 343.2 218 83.5
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 6.8e-90 334.3 218 80.7
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 3.4e-89 332.0 217 82.9
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 6.8e-82 307.8 218 73.9
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 4.9e-64 248.4 223 60.5
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.2e-57 227.3 193 62.2
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 2.4e-55 219.5 206 54.4
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.3e-53 213.8 216 53.2
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 1.8e-53 213.4 219 53.9
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 1.1e-52 210.7 212 54.2
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 2.1e-51 206.5 191 58.1
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 4.8e-51 205.3 195 62.1
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 3.1e-50 202.6 180 59.4
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.5e-49 198.7 191 58.1
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 4.5e-49 198.7 191 58.1
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 1.7e-48 196.8 212 52.4
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 1.7e-48 196.8 193 53.4
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 2.9e-48 196.1 189 56.6
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 3.8e-48 195.7 191 52.9
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 6.5e-48 194.9 189 54.5
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 8.4e-48 194.5 192 51.6
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 1.9e-47 193.4 203 52.2
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 2.5e-47 193.0 191 56.5
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 3.2e-47 192.6 203 50.2
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 2.7e-46 189.5 208 51.4
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 6.0e-46 188.3 215 51.2
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 7.9e-46 188.0 210 49.5
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 1.3e-45 187.2 187 55.1
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 5.1e-45 185.3 190 53.2
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 6.7e-45 184.9 190 51.1
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 1.1e-44 184.1 220 47.3
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 3.3e-44 182.6 195 53.3
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 4.3e-44 182.2 216 47.7
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 4.3e-44 182.2 205 49.8
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 7.4e-44 181.4 182 52.7
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 9.6e-44 181.0 222 47.3
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 9.6e-44 181.0 193 53.4
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 1.3e-43 180.6 190 50.5
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 2.1e-43 179.9 205 47.8
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 3.7e-43 179.1 229 46.3
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 4.8e-43 178.7 189 49.2
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 4.8e-43 178.7 218 45.9
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 6.3e-43 178.3 217 45.6
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.1e-42 177.6 216 50.9
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 1.1e-42 177.6 217 43.8
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 1.8e-42 176.8 196 47.4
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 2.4e-42 176.4 190 50.0
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 2.4e-42 176.4 189 51.3
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 2.4e-42 176.4 215 46.0
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 2.4e-42 176.4 216 45.8
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 4.1e-42 175.6 187 52.9
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 6.9e-42 174.9 188 48.4
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 9.0e-42 174.5 196 45.4
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 9.0e-42 174.5 198 47.5
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 9.0e-42 174.5 205 44.4
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 1.2e-41 174.1 192 49.5
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 1.5e-41 173.7 189 46.6
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 1.5e-41 173.7 189 48.7
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 2.6e-41 172.9 190 52.6
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 2.6e-41 172.9 182 50.5
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 4.5e-41 172.2 209 46.9
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.7e-40 170.2 189 48.1
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 2.2e-40 169.9 190 50.0
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 2.9e-40 169.5 190 46.8
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 2.9e-40 169.5 192 50.5
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 5.0e-40 168.7 190 50.0
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 5.0e-40 168.7 210 47.6
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 6.5e-40 168.3 205 45.9
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 8.5e-40 167.9 180 49.4
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 1.1e-39 167.5 182 48.9
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.4e-39 167.2 197 48.2
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 3.2e-39 166.0 187 44.9
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 4.2e-39 165.6 205 47.3
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 7.2e-39 164.9 197 47.7
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 7.2e-39 164.9 197 47.2
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 9.3e-39 164.5 189 50.3
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 9.3e-39 164.5 200 47.5
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 2.1e-38 163.3 230 43.0
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 4.6e-38 162.2 205 45.4
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 7.9e-38 161.4 215 44.7
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 1.8e-37 160.2 192 46.4
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 5.1e-37 158.7 167 49.7
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 5.1e-37 158.7 193 47.2
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 6.7e-37 158.3 181 47.5
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 8.7e-37 157.9 218 45.0
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 3.3e-36 156.0 200 43.5
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 3.3e-36 156.0 201 45.8
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 5.7e-36 155.2 219 45.2
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 7.4e-36 154.8 182 46.2
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 1.3e-35 154.1 190 46.3
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 2.8e-35 152.9 189 43.4
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 3.7e-35 152.5 193 43.0
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 1.2e-33 147.5 185 45.9
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 2.0e-33 146.7 303 34.7
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 2.0e-33 146.7 217 41.0
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 4.5e-33 145.6 215 39.5
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 1.0e-32 144.4 189 41.8
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 1.7e-32 143.7 186 44.1
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 2.2e-32 143.3 207 44.9
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 8.5e-32 141.4 112 60.7
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 1.1e-31 141.0 219 38.4
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 4.2e-31 139.0 153 47.7
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.2e-31 139.0 216 38.4
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 7.2e-31 138.3 150 51.3
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 7.2e-31 138.3 216 38.4
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 1.6e-30 137.1 204 41.2
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 2.7e-30 136.3 158 48.1
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 1.4e-29 134.0 136 51.5
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 3.9e-29 132.5 120 53.3
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 8.8e-29 131.3 192 44.3
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 3.3e-28 129.4 192 43.8
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.4e-28 129.0 192 43.8
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 1.3e-27 127.5 136 47.8
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 1.7e-27 127.1 310 34.8
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 2.8e-27 126.3 209 39.2
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 6.3e-27 125.2 127 48.8
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 6.3e-27 125.2 92 62.0
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 1.4e-26 124.0 145 48.3
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 1.5e-25 120.6 194 41.2
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 3.4e-25 119.4 92 60.9
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 8.5e-24 114.8 131 45.8
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 1.1e-23 114.4 162 42.0
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 2.5e-23 113.2 137 48.9
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 1.6e-22 110.5 161 42.2
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 7.9e-22 108.2 197 37.1
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 1.0e-21 107.8 188 37.8
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 3.3e-20 102.8 116 44.8
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 5.7e-20 102.1 94 56.4
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 8.2e-19 98.2 190 34.2
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 2.0e-17 93.6 200 34.5
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 3.5e-17 92.8 198 31.3
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 4.5e-17 92.4 72 59.7
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.3e-16 90.9 198 33.3
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 2.2e-16 90.1 93 48.4
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 1.1e-15 87.8 142 38.7
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 2.5e-15 86.7 194 30.4
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 5.5e-15 85.5 151 35.8
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.6e-14 84.0 207 33.8
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 4.7e-14 82.4 147 35.4
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 1.8e-10 70.5 125 36.0
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 2.5e-07 60.1 270 26.3
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 3.6e-06 56.2 62 50.0
TAR626G0405 Trochodendron aralioides HOM05D000010 ORTHO05D016350 6.1e-06 55.5 39 66.7


User provided reference genes

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