Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g10710 Schrenkiella parvula HOM05D014005 ORTHO05D015363 1.6e-207 726.1 441 100.0
Thhalv10010380m.g Eutrema salsugineum HOM05D014005 ORTHO05D015363 5.3e-142 508.4 461 72.7
BraA09t39927Z Brassica rapa HOM05D014005 ORTHO05D015363 1.2e-136 490.7 462 67.7
BolC8t50290H Brassica oleracea HOM05D014005 ORTHO05D015363 1.3e-135 487.3 462 67.7
C08p26770 Brassica napus HOM05D014005 ORTHO05D015363 2.2e-135 486.5 462 67.5
A09p44670 Brassica napus HOM05D014005 ORTHO05D015363 4.1e-134 482.3 461 67.7
Carub.0005s1792 Capsella rubella HOM05D014005 ORTHO05D015363 1.1e-115 421.0 462 61.3
AL5G31980 Arabidopsis lyrata HOM05D014005 ORTHO05D015363 1.0e-108 397.9 452 60.0
AT3G51540 Arabidopsis thaliana HOM05D014005 ORTHO05D015363 2.6e-104 383.3 380 66.8
CARHR161110 Cardamine hirsuta HOM05D014005 ORTHO05D015363 3.7e-103 379.4 475 57.1
BcaB01g00507 Brassica carinata HOM05D014005 ORTHO05D015363 6.2e-98 362.1 443 59.1
THA.LOC104806652 Tarenaya hassleriana HOM05D004711 ORTHO05D015363 2.4e-33 147.5 490 36.9
Duzib151G1091 Durio zibethinus HOM05D004711 ORTHO05D005594 3.8e-23 113.6 555 28.8
CSS0021593 Camellia sinensis var. sinensis HOM05D004711 ORTHO05D005594 1.4e-20 105.1 587 30.0
COL.COLO4_21250 Corchorus olitorius HOM05D004711 ORTHO05D005594 3.4e-19 100.5 561 29.2
BolC3t16673H Brassica oleracea HOM05D004711 ORTHO05D005594 4.8e-18 96.7 509 29.9
Aa31LG5G18710 Aethionema arabicum HOM05D004711 ORTHO05D005594 6.3e-18 96.3 238 33.6
BcaC01g04190 Brassica carinata HOM05D004711 ORTHO05D005594 8.3e-18 95.9 510 29.8
Thecc.04G149100 Theobroma cacao HOM05D004711 ORTHO05D005594 1.4e-17 95.1 220 35.0
Gohir.D02G106500 Gossypium hirsutum HOM05D004711 ORTHO05D005594 3.1e-17 94.0 499 28.7
Carub.0003s0780 Capsella rubella HOM05D004711 ORTHO05D005594 4.1e-17 93.6 575 30.8
Manes.08G169400 Manihot esculenta HOM05D004711 ORTHO05D005594 4.1e-17 93.6 535 31.6
Cpa.g.sc72.61 Carica papaya HOM05D004711 ORTHO05D005594 9.1e-17 92.4 217 34.6
Dinv16951 Davidia involucrata HOM05D004711 ORTHO05D005594 9.1e-17 92.4 578 31.3
Gorai.005G121000 Gossypium raimondii HOM05D004711 ORTHO05D005594 9.1e-17 92.4 535 27.1
C03p44020 Brassica napus HOM05D004711 ORTHO05D005594 2.7e-16 90.9 509 29.9
A03p36410 Brassica napus HOM05D004711 ORTHO05D005594 4.5e-16 90.1 509 31.4
Duzib268G1837 Durio zibethinus HOM05D004711 ORTHO05D005594 4.5e-16 90.1 544 27.9
Manes.09G122600 Manihot esculenta HOM05D004711 ORTHO05D005594 5.9e-16 89.7 539 30.1
Peaxi162Scf00732g00135 Petunia axillaris HOM05D004711 ORTHO05D005594 5.9e-16 89.7 547 27.8
CSS0041259 Camellia sinensis var. sinensis HOM05D004711 ORTHO05D005594 1.3e-15 88.6 588 31.0
TAR636G2556 Trochodendron aralioides HOM05D004711 ORTHO05D005594 3.8e-15 87.0 570 29.1
MSTRG.5483 Avicennia marina HOM05D004711 ORTHO05D005594 5.0e-15 86.7 531 30.3
HanXRQChr10g0287631 Helianthus annuus HOM05D004711 ORTHO05D005594 6.5e-15 86.3 221 31.7
AL3G19670 Arabidopsis lyrata HOM05D004711 ORTHO05D005594 8.5e-15 85.9 198 34.8
BcaC05g29602 Brassica carinata HOM05D004711 ORTHO05D005594 8.5e-15 85.9 565 33.1
CARHR082970 Cardamine hirsuta HOM05D004711 ORTHO05D005594 8.5e-15 85.9 566 31.6
Sp3g07110 Schrenkiella parvula HOM05D004711 ORTHO05D005594 1.1e-14 85.5 552 30.6
AT3G08670 Arabidopsis thaliana HOM05D004711 ORTHO05D005594 1.9e-14 84.7 198 34.8
Haze_21199 Corylus avellana HOM05D004711 ORTHO05D005594 1.9e-14 84.7 548 32.1
Hma1.2p1_0537F.1_g174195 Hydrangea macrophylla HOM05D004711 ORTHO05D005594 2.5e-14 84.3 281 29.9
VMungo1383G3052 Vigna mungo HOM05D004711 ORTHO05D005594 2.5e-14 84.3 219 30.1
BcaB04g18575 Brassica carinata HOM05D004711 ORTHO05D005594 3.2e-14 84.0 233 33.9
Gohir.A03G087100 Gossypium hirsutum HOM05D004711 ORTHO05D005594 5.5e-14 83.2 543 28.4
Phvul.008G080400 Phaseolus vulgaris HOM05D004711 ORTHO05D005594 5.5e-14 83.2 591 30.3
Sabra06G0086000 Salix brachista HOM05D004711 ORTHO05D005594 5.5e-14 83.2 213 31.9
CAN.G180.2 Capsicum annuum HOM05D004711 ORTHO05D005594 1.2e-13 82.0 280 30.4
Atru.chr8.78 Acer truncatum HOM05D004711 ORTHO05D005594 1.6e-13 81.6 321 27.4
Ca_07784_v3 Cicer arietinum L. HOM05D004711 ORTHO05D005594 1.6e-13 81.6 289 29.1
Nn1g01604 Nelumbo nucifera HOM05D004711 ORTHO05D005594 2.1e-13 81.3 499 27.7
Potri.016G139500 Populus trichocarpa HOM05D004711 ORTHO05D005594 2.1e-13 81.3 540 29.4
PGR004G0084 Punica granatum HOM05D004711 ORTHO05D005594 2.1e-13 81.3 544 27.6
AUR62006439 Chenopodium quinoa HOM05D004711 ORTHO05D005594 3.6e-13 80.5 214 30.8
Thhalv10020404m.g Eutrema salsugineum HOM05D004711 ORTHO05D005594 3.6e-13 80.5 552 31.5
Potri.006G110700 Populus trichocarpa HOM05D004711 ORTHO05D005594 3.6e-13 80.5 278 30.2
PGSC0003DMG400002318 Solanum tuberosum HOM05D004711 ORTHO05D005594 3.6e-13 80.5 249 31.7
BraA03t12809Z Brassica rapa HOM05D004711 ORTHO05D005594 4.7e-13 80.1 266 32.7
Actinidia32572 Actinidia chinensis HOM05D004711 ORTHO05D005594 6.1e-13 79.7 583 26.2
Cc06_g00250 Coffea canephora HOM05D004711 ORTHO05D005594 6.1e-13 79.7 302 28.5
ClCG04G006250 Citrullus lanatus HOM05D004711 ORTHO05D005594 8.0e-13 79.3 545 27.9
AUR62029794 Chenopodium quinoa HOM05D004711 ORTHO05D005594 1.0e-12 79.0 214 30.4
SGA_v2.0_scaffold85G26592 Striga asiatica HOM05D004711 ORTHO05D005594 1.4e-12 78.6 527 27.5
THA.LOC104816161 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 1.4e-12 78.6 225 32.9
THA.LOC104816162 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 1.4e-12 78.6 225 32.9
THA.LOC104816163 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 1.4e-12 78.6 225 32.9
Ciclev10011470m.g Citrus clementina HOM05D004711 ORTHO05D005594 1.8e-12 78.2 490 32.4
Medtr7g073720 Medicago truncatula HOM05D004711 ORTHO05D005594 1.8e-12 78.2 230 32.6
Migut.J00018 Erythranthe guttata HOM05D004711 ORTHO05D005594 2.3e-12 77.8 210 31.0
TWI74G1298 Tripterygium wilfordii HOM05D004711 ORTHO05D005594 3.0e-12 77.4 232 30.2
EL10Ac7g17131 Beta vulgaris HOM05D004711 ORTHO05D005594 5.2e-12 76.6 213 31.9
Glyma.09G272800 Glycine max HOM05D004711 ORTHO05D005594 6.8e-12 76.3 593 29.3
Lsat_1_v5_gn_9_39741 Lactuca sativa HOM05D004711 ORTHO05D005594 6.8e-12 76.3 218 31.2
QL07p031674 Quercus lobata HOM05D004711 ORTHO05D005594 6.8e-12 76.3 564 28.5
Sabra04G0156000 Salix brachista HOM05D004711 ORTHO05D005594 6.8e-12 76.3 276 30.8
TWI53G0370 Tripterygium wilfordii HOM05D004711 ORTHO05D005594 6.8e-12 76.3 199 32.2
Solyc09g031517.1 Solanum lycopersicum HOM05D004711 ORTHO05D005594 8.8e-12 75.9 247 31.6
GSVIVG01029882001 Vitis vinifera HOM05D004711 ORTHO05D005594 8.8e-12 75.9 227 32.6
THA.LOC104823329 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 1.2e-11 75.5 285 30.9
Gorai.005G003100 Gossypium raimondii HOM05D004711 ORTHO05D005594 1.5e-11 75.1 301 29.6
Oeu030100.1 Olea europaea HOM05D004711 ORTHO05D005594 1.5e-11 75.1 284 27.1
BcaC05g29601 Brassica carinata HOM05D004711 ORTHO05D005594 2.0e-11 74.7 293 30.7
C05p59190 Brassica napus HOM05D004711 ORTHO05D005594 2.0e-11 74.7 293 30.7
Lj2C57T4 Lonicera japonica HOM05D004711 ORTHO05D005594 2.0e-11 74.7 298 29.2
Lj1g0020419 Lotus japonicus HOM05D004711 ORTHO05D005594 2.0e-11 74.7 303 29.0
Sopen09g013790 Solanum pennellii HOM05D004711 ORTHO05D005594 2.6e-11 74.3 249 31.3
Ah.15g089840 Amaranthus hybridus HOM05D004711 ORTHO05D005594 3.4e-11 73.9 217 30.9
BolC5t34578H Brassica oleracea HOM05D004711 ORTHO05D005594 3.4e-11 73.9 293 29.7
ECA247G0260 Erigeron canadensis HOM05D004711 ORTHO05D005594 3.4e-11 73.9 284 29.2
arahy.Tifrunner.gnm1.ann1.QFH4DU Arachis hypogaea HOM05D004711 ORTHO05D005594 4.4e-11 73.6 231 29.4
CSS0008345 Camellia sinensis var. sinensis HOM05D004711 ORTHO05D005594 5.7e-11 73.2 580 29.1
FAN02G0291 Fragaria x ananassa HOM05D004711 ORTHO05D005594 5.7e-11 73.2 221 31.2
FvH4_6g09520 Fragaria vesca HOM05D004711 ORTHO05D005594 7.5e-11 72.8 221 30.8
FAN14G5267 Fragaria x ananassa HOM05D004711 ORTHO05D005594 7.5e-11 72.8 221 30.8
Hma1.2p1_2237F.1_g317760 Hydrangea macrophylla HOM05D004711 ORTHO05D005594 7.5e-11 72.8 110 38.2
Oeu063842.1 Olea europaea HOM05D004711 ORTHO05D005594 9.8e-11 72.4 284 28.5
SalBow5G3438 Salvia bowleyana HOM05D004711 ORTHO05D005594 9.8e-11 72.4 125 34.4
Sed0027783 Sechium edule HOM05D004711 ORTHO05D005594 1.3e-10 72.0 544 30.0
Lj3A939T103 Lonicera japonica HOM05D004711 ORTHO05D005594 1.7e-10 71.6 220 32.7
MELO3C025248.2 Cucumis melo HOM05D004711 ORTHO05D005594 2.8e-10 70.9 577 29.3
Glyma.18G216300 Glycine max HOM05D004711 ORTHO05D005594 2.8e-10 70.9 335 30.4
HanXRQChr01g0000511 Helianthus annuus HOM05D004711 ORTHO05D005594 2.8e-10 70.9 206 31.6
Rhsim05G0232600 Rhododendron simsii HOM05D004711 ORTHO05D005594 2.8e-10 70.9 293 28.3
A05p40110 Brassica napus HOM05D004711 ORTHO05D005594 4.9e-10 70.1 386 34.2
MD04G1176700 Malus domestica HOM05D004711 ORTHO05D005594 6.3e-10 69.7 238 29.0
unitig_22.g6618 Utricularia gibba HOM05D004711 ORTHO05D005594 6.3e-10 69.7 526 27.4
Eucgr.K01295 Eucalyptus grandis HOM05D004711 ORTHO05D005594 8.3e-10 69.3 575 28.0
MD12G1191700 Malus domestica HOM05D004711 ORTHO05D005594 8.3e-10 69.3 216 30.6
RcHm_v2.0_Chr3g0460111 Rosa chinensis HOM05D004711 ORTHO05D005594 8.3e-10 69.3 304 28.0
Gohir.A02G002300 Gossypium hirsutum HOM05D004711 ORTHO05D005594 1.1e-09 68.9 287 27.5
Gohir.D02G002600 Gossypium hirsutum HOM05D004711 ORTHO05D005594 1.1e-09 68.9 551 27.9
Sed0008721 Sechium edule HOM05D004711 ORTHO05D005594 1.1e-09 68.9 553 28.9
Hund03689 Selenicereus undatus HOM05D004711 ORTHO05D005594 1.1e-09 68.9 282 28.7
Actinidia11492 Actinidia chinensis HOM05D004711 ORTHO05D005594 1.4e-09 68.6 557 28.0
Nn2g10244 Nelumbo nucifera HOM05D004711 ORTHO05D005594 1.4e-09 68.6 536 25.6
TPR.G24318 Trifolium pratense HOM05D004711 ORTHO05D005594 2.4e-09 67.8 590 27.6
FAN05G2346 Fragaria x ananassa HOM05D004711 ORTHO05D005594 3.1e-09 67.4 214 29.4
Lsat_1_v5_gn_5_151680 Lactuca sativa HOM05D004711 ORTHO05D005594 4.1e-09 67.0 191 31.4
Sc20g0007170 Simmondsia chinensis HOM05D004711 ORTHO05D005594 4.1e-09 67.0 284 27.5
CsaV3_4G027310 Cucumis sativus L. HOM05D004711 ORTHO05D005594 9.2e-09 65.9 296 26.7
Nn5g26805 Nelumbo nucifera HOM05D004711 ORTHO05D005594 9.2e-09 65.9 540 27.8
arahy.Tifrunner.gnm1.ann1.C9I5IG Arachis hypogaea HOM05D004711 ORTHO05D005594 1.6e-08 65.1 306 27.8
DCAR_015327 Daucus carota HOM05D004711 ORTHO05D005594 1.6e-08 65.1 305 28.2
Actinidia29018 Actinidia chinensis HOM05D004711 ORTHO05D005594 2.7e-08 64.3 302 26.2
PSO339G1855 Papaver somniferum HOM05D004711 ORTHO05D005594 2.7e-08 64.3 539 27.5
VMungo0331G0284 Vigna mungo HOM05D004711 ORTHO05D005594 4.5e-08 63.5 208 31.2
Glyma.03G001700 Glycine max HOM05D004711 ORTHO05D005594 7.7e-08 62.8 205 31.7
Prupe.6G296400 Prunus persica HOM05D004711 ORTHO05D005594 2.3e-07 61.2 397 29.5
FAN09G1198 Fragaria x ananassa HOM05D004711 ORTHO05D005594 2.9e-07 60.8 292 27.1
TAR633G0481 Trochodendron aralioides HOM05D004711 ORTHO05D005594 3.8e-07 60.5 411 25.8
Oeu026938.1 Olea europaea HOM05D004711 ORTHO05D005594 1.1e-06 58.9 312 26.0
vmacro20386 Vaccinium macrocarpon HOM05D004711 ORTHO05D005594 1.9e-06 58.2 133 30.1
Os05g0480600 Oryza sativa ssp. japonica HOM05D004711 ORTHO05D005594 2.5e-06 57.8 177 30.5
Lalb_Chr01g0023911 Lupinus albus HOM05D004711 ORTHO05D005594 3.3e-06 57.4 166 29.5
Glyma.16G220600 Glycine max HOM05D004711 ORTHO05D005594 4.3e-06 57.0 483 25.9
Nitab4.5_0000048g0270 Nicotiana tabacum HOM05D004711 ORTHO05D005594 4.3e-06 57.0 471 24.6
Zm00001eb290760 Zea mays HOM05D004711 ORTHO05D005594 4.3e-06 57.0 316 25.9
Nitab4.5_0001876g0050 Nicotiana tabacum HOM05D004711 ORTHO05D005594 9.5e-06 55.8 466 25.5
Os01g0819000 Oryza sativa ssp. japonica HOM05D004711 ORTHO05D005594 9.5e-06 55.8 214 29.4
unitig_578.g15918 Utricularia gibba HOM05D004711 ORTHO05D005594 9.5e-06 55.8 218 28.9


User provided reference genes

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