Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 4.1e-159 564.7 287 100.0
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 8.0e-123 444.1 295 77.6
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 8.0e-123 444.1 295 77.6
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 2.3e-122 442.6 295 77.3
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 8.9e-122 440.7 295 76.9
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 4.4e-121 438.3 295 76.6
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 6.0e-118 427.9 296 74.7
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 3.7e-112 408.7 299 73.9
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 4.1e-111 405.2 298 73.2
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 4.6e-110 401.7 289 76.5
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 7.8e-110 401.0 293 75.4
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 5.1e-109 398.3 289 75.8
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 2.5e-108 396.0 298 71.5
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 3.3e-108 395.6 289 75.1
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 5.6e-108 394.8 298 71.1
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 5.4e-87 325.1 287 63.1
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 1.3e-85 320.5 310 58.1
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.5e-84 317.0 294 59.2
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 2.5e-84 316.2 287 60.3
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 4.9e-80 302.0 286 59.1
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 6.4e-80 301.6 291 58.1
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 1.4e-74 283.9 291 56.0
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 3.1e-74 282.7 244 68.9
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 5.7e-60 235.3 304 47.7
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 4.8e-59 232.3 329 46.2
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 1.1e-58 231.1 321 45.2
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 3.4e-57 226.1 330 43.0
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 1.1e-55 221.1 318 43.1
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 1.9e-55 220.3 328 44.8
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.9e-55 220.3 322 43.5
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.9e-55 220.3 328 44.2
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 2.5e-55 219.9 322 43.2
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 4.2e-55 219.2 311 45.3
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 5.5e-55 218.8 319 43.9
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 5.5e-55 218.8 319 43.9
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 5.5e-55 218.8 319 43.3
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 2.1e-54 216.9 320 45.0
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 2.7e-54 216.5 315 44.4
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 4.7e-54 215.7 329 42.6
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 7.9e-54 214.9 331 42.3
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 1.0e-53 214.5 329 44.1
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.0e-53 214.5 320 42.8
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 1.4e-53 214.2 322 43.5
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.8e-53 213.8 322 42.2
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 2.3e-53 213.4 311 46.0
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 3.9e-53 212.6 311 45.7
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 6.7e-53 211.8 311 45.0
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 6.7e-53 211.8 311 45.0
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 2.6e-52 209.9 311 45.3
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 3.3e-52 209.5 331 41.7
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 4.4e-52 209.1 340 42.9
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 5.7e-52 208.8 353 40.5
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 9.7e-52 208.0 310 42.9
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 2.2e-51 206.8 336 41.1
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 2.2e-51 206.8 336 41.1
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 2.8e-51 206.5 324 42.6
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 2.8e-51 206.5 325 42.8
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 2.8e-51 206.5 325 42.8
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 2.8e-51 206.5 350 41.4
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 6.3e-51 205.3 350 42.0
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 8.2e-51 204.9 318 44.0
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 3.1e-50 203.0 322 42.9
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 4.5e-49 199.1 345 40.0
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.3e-48 197.6 318 40.3
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 2.2e-48 196.8 345 39.7
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 2.9e-48 196.4 342 39.5
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 3.8e-48 196.1 334 40.4
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 1.9e-47 193.7 313 41.9
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 1.9e-47 193.7 325 41.5
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 7.2e-47 191.8 330 37.3
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 1.6e-46 190.7 341 39.3
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 2.7e-46 189.9 317 39.4
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 2.7e-46 189.9 317 39.4
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 3.6e-46 189.5 334 39.2
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 6.1e-46 188.7 332 37.7
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 1.0e-45 188.0 330 38.5
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 1.0e-45 188.0 327 39.8
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 1.8e-45 187.2 342 38.6
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 2.3e-45 186.8 327 37.9
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 3.0e-45 186.4 311 39.9
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 3.0e-45 186.4 352 37.8
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 1.1e-44 184.5 271 42.4
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 1.5e-44 184.1 314 40.1
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 2.0e-44 183.7 343 37.0
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 2.0e-44 183.7 342 39.2
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 4.4e-44 182.6 316 39.9
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 4.4e-44 182.6 340 36.2
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 5.7e-44 182.2 342 38.6
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 7.4e-44 181.8 333 36.9
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 1.7e-43 180.6 332 38.3
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 4.8e-43 179.1 331 38.4
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 6.3e-43 178.7 320 37.5
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 8.2e-43 178.3 337 38.3
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 8.2e-43 178.3 337 35.6
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 1.1e-42 177.9 356 35.1
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 1.1e-42 177.9 356 35.1
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 1.8e-42 177.2 329 37.7
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 2.4e-42 176.8 321 39.3
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 2.0e-41 173.7 343 37.0
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 2.6e-41 173.3 340 37.1
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 2.6e-41 173.3 340 37.4
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 4.5e-41 172.6 340 37.6
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 5.9e-41 172.2 328 38.4
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 1.7e-40 170.6 309 40.1
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 1.1e-39 167.9 328 38.4
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 1.1e-39 167.9 319 36.4
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 1.5e-39 167.5 341 35.8
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 1.5e-39 167.5 329 37.7
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 3.2e-39 166.4 347 37.5
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 9.4e-39 164.9 300 37.0
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 1.2e-38 164.5 342 34.5
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 1.6e-38 164.1 350 37.1
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 2.1e-38 163.7 364 35.7
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 1.2e-36 157.9 349 36.7
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 2.0e-36 157.1 299 37.5
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 9.7e-36 154.8 330 35.2
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 2.8e-35 153.3 316 37.3
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.1e-34 151.4 314 34.7
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 2.4e-34 150.2 280 37.5
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 7.0e-34 148.7 306 35.0
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 1.2e-33 147.9 352 34.9
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 2.7e-33 146.7 234 41.5
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 1.0e-32 144.8 321 35.2
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 1.0e-32 144.8 321 34.0
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 1.3e-32 144.4 318 33.0
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 1.3e-32 144.4 252 40.5
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 1.7e-32 144.1 352 34.4
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 1.1e-31 141.4 313 35.8
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 1.1e-31 141.4 320 36.6
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 1.9e-31 140.6 271 38.0
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 1.9e-31 140.6 345 35.7
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 2.5e-31 140.2 276 38.8
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 7.2e-31 138.7 345 35.9
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 9.4e-31 138.3 345 35.7
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 1.6e-30 137.5 309 35.9
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 4.7e-30 136.0 318 35.5
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 6.1e-30 135.6 274 38.0
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 8.0e-30 135.2 327 34.6
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.4e-29 134.4 327 34.3
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 3.0e-29 133.3 316 34.8
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 4.0e-29 132.9 326 35.3
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 8.8e-29 131.7 314 36.0
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 8.8e-29 131.7 314 36.0
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.2e-28 131.3 248 35.5
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 4.5e-25 119.4 225 36.0
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 5.9e-25 119.0 262 35.1
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 2.5e-23 113.6 237 38.8
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 2.8e-22 110.2 316 29.4
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 1.0e-21 108.2 308 29.5
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 3.0e-21 106.7 316 30.1
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 1.5e-20 104.4 297 32.0
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 1.5e-20 104.4 289 31.8
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 1.3e-19 101.3 303 32.7
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 3.9e-16 89.7 224 32.6
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 3.9e-16 89.7 288 30.2
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 6.6e-16 89.0 224 32.6
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 7.3e-15 85.5 305 29.8
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 4.7e-14 82.8 220 30.9
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 3.1e-13 80.1 266 24.8
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 1.2e-12 78.2 202 31.7
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 2.6e-12 77.0 320 28.4
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 3.4e-12 76.6 289 28.0
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 1.9e-10 70.9 191 32.5
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 5.4e-10 69.3 255 28.2
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 9.2e-10 68.6 255 23.9
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 1.3e-08 64.7 268 29.1
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 7.3e-07 58.9 205 31.2


User provided reference genes

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