Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 4.6e-32 140.6 70 100.0
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 3.0e-31 137.9 70 95.7
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 3.3e-30 134.4 68 95.6
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 4.8e-29 130.6 66 97.0
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 8.2e-29 129.8 66 97.0
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 8.2e-29 129.8 66 93.9
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 1.8e-28 128.6 65 95.4
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 3.1e-28 127.9 69 92.8
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 4.1e-28 127.5 65 93.8
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 5.3e-28 127.1 69 92.8
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 5.3e-28 127.1 69 92.8
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 5.3e-28 127.1 69 92.8
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 2.0e-27 125.2 67 89.6
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 5.9e-27 123.6 62 95.2
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 1.7e-26 122.1 67 89.6
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 1.7e-26 122.1 67 89.6
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 4.7e-24 114.0 69 82.6
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 4.7e-24 114.0 69 82.6
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 7.9e-24 113.2 70 81.4
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 1.4e-23 112.5 69 81.2
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 1.4e-23 112.5 69 81.2
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 1.4e-23 112.5 69 81.2
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 2.4e-20 101.7 69 69.6
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.6e-19 98.2 60 75.0
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 2.6e-19 98.2 60 75.0
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.7e-18 95.5 60 75.0
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 3.8e-18 94.4 66 66.7
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 6.5e-18 93.6 66 65.2
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 6.5e-18 93.6 60 71.7
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 1.9e-17 92.0 66 63.6
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 5.5e-17 90.5 67 58.2
BcaNung06092 Brassica carinata HOM05D004166 ORTHO05D004992 7.2e-17 90.1 69 72.5
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 7.2e-17 90.1 66 63.6
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 9.4e-17 89.7 67 59.7
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 9.4e-17 89.7 66 63.6
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 9.4e-17 89.7 66 65.2
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 1.6e-16 89.0 66 63.6
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 1.6e-16 89.0 67 62.7
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 2.1e-16 88.6 66 60.6
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 2.1e-16 88.6 65 63.1
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 3.6e-16 87.8 67 61.2
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 4.7e-16 87.4 66 60.6
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 6.1e-16 87.0 65 60.0
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 6.1e-16 87.0 66 63.6
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 8.0e-16 86.7 66 60.6
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 1.0e-15 86.3 65 60.0
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.0e-15 86.3 66 65.2
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.4e-15 85.9 66 62.1
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 1.8e-15 85.5 64 59.4
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 3.0e-15 84.7 67 53.7
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 3.0e-15 84.7 67 53.7
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 3.0e-15 84.7 64 60.9
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 3.9e-15 84.3 65 55.4
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 3.9e-15 84.3 65 55.4
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 5.2e-15 84.0 67 53.7
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 6.7e-15 83.6 67 53.7
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 6.7e-15 83.6 67 53.7
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 8.8e-15 83.2 57 64.9
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 8.8e-15 83.2 60 63.3
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 1.5e-14 82.4 59 64.4
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 2.0e-14 82.0 67 56.7
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 2.0e-14 82.0 66 57.6
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.6e-14 81.6 66 57.6
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.6e-14 81.6 66 57.6
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 2.6e-14 81.6 64 57.8
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.7e-14 80.5 66 56.1
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 7.4e-14 80.1 66 57.6
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 1.7e-13 79.0 65 55.4
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 2.2e-13 78.6 66 53.0
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.2e-13 78.6 66 56.1
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 2.2e-13 78.6 66 56.1
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 3.7e-13 77.8 65 53.8
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 3.7e-13 77.8 64 57.8
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 6.3e-13 77.0 66 56.1
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 8.2e-13 76.6 67 53.7
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.1e-12 76.3 66 56.1
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.1e-12 76.3 65 55.4
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.8e-12 75.5 66 53.0
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 1.8e-12 75.5 66 54.5
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 1.8e-12 75.5 70 55.7
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 1.8e-12 75.5 66 54.5
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 1.8e-12 75.5 58 62.1
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 3.1e-12 74.7 66 56.1
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 4.1e-12 74.3 66 56.1
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 7.0e-12 73.6 65 53.8
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 7.0e-12 73.6 65 53.8
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 9.1e-12 73.2 65 50.8
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 9.1e-12 73.2 66 57.6
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 9.1e-12 73.2 60 61.7
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 9.1e-12 73.2 60 61.7
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 1.2e-11 72.8 58 60.3
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 1.2e-11 72.8 66 51.5
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 1.2e-11 72.8 66 53.0
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 1.2e-11 72.8 66 53.0
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 2.0e-11 72.0 65 53.8
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 2.0e-11 72.0 61 57.4
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 2.0e-11 72.0 61 57.4
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 2.0e-11 72.0 65 53.8
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 2.6e-11 71.6 66 56.1
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.6e-11 71.6 60 55.0
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.6e-11 71.6 60 55.0
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 3.5e-11 71.2 66 51.5
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 3.5e-11 71.2 66 50.0
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 4.5e-11 70.9 66 53.0
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 4.5e-11 70.9 66 51.5
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 5.9e-11 70.5 57 59.6
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 7.7e-11 70.1 66 50.0
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.3e-10 69.3 61 55.7
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 1.3e-10 69.3 61 54.1
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.7e-10 68.9 70 52.9
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 2.2e-10 68.6 66 53.0
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 2.9e-10 68.2 66 51.5
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 2.9e-10 68.2 62 53.2
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 5.0e-10 67.4 67 50.7
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 5.0e-10 67.4 65 50.8
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 5.0e-10 67.4 64 48.4
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 5.0e-10 67.4 63 55.6
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 6.5e-10 67.0 67 49.3
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 6.5e-10 67.0 58 58.6
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 8.5e-10 66.6 67 47.8
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 8.5e-10 66.6 67 49.3
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 1.5e-09 65.9 49 57.1
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.5e-09 65.1 67 53.7
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.5e-09 65.1 67 53.7
TPR.G15223 Trifolium pratense HOM05D004166 ORTHO05D004992 3.2e-09 64.7 67 49.3
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 4.2e-09 64.3 59 50.8
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 4.2e-09 64.3 66 48.5
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 4.2e-09 64.3 57 54.4
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 5.5e-09 63.9 58 55.2
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 7.2e-09 63.5 56 57.1
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 7.2e-09 63.5 56 57.1
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 7.2e-09 63.5 58 53.4
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.2e-08 62.8 57 54.4
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.2e-08 62.8 57 54.4
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 1.2e-08 62.8 57 52.6
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 2.7e-08 61.6 59 52.5
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 3.6e-08 61.2 57 54.4
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 4.7e-08 60.8 51 52.9
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 8.0e-08 60.1 64 50.0
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 8.0e-08 60.1 67 44.8
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 8.0e-08 60.1 58 53.4
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 1.0e-07 59.7 62 48.4
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 1.0e-07 59.7 62 48.4
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.0e-07 59.7 51 52.9
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 1.4e-07 59.3 62 51.6
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 1.4e-07 59.3 59 50.8
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 1.4e-07 59.3 65 47.7
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.8e-07 58.9 65 47.7
Actinidia09355 Actinidia chinensis HOM05D004166 ORTHO05D004992 2.3e-07 58.5 67 46.3
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 2.3e-07 58.5 58 50.0
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 2.3e-07 58.5 58 51.7
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 4.0e-07 57.8 58 51.7
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 8.8e-07 56.6 65 47.7
Zm00001eb256610 Zea mays HOM05D004166 ORTHO05D004992 8.8e-07 56.6 58 50.0
Os03g0174800 Oryza sativa ssp. japonica HOM05D004166 ORTHO05D004992 1.2e-06 56.2 58 50.0
Migut.J01778 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.5e-06 55.8 53 54.7
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 1.5e-06 55.8 35 71.4
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.5e-06 55.8 63 52.4
Zm00001eb056460 Zea mays HOM05D004166 ORTHO05D004992 1.5e-06 55.8 58 51.7
DCAR_016996 Daucus carota HOM05D004166 ORTHO05D004992 2.0e-06 55.5 64 50.0
Zm00001eb018710 Zea mays HOM05D004166 ORTHO05D004992 2.6e-06 55.1 58 50.0
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.3e-06 54.7 55 50.9
Actinidia24523 Actinidia chinensis HOM05D004166 ORTHO05D004992 4.4e-06 54.3 38 63.2
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 4.4e-06 54.3 58 50.0
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 5.7e-06 53.9 59 45.8


User provided reference genes

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