Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 5.3e-107 391.3 246 100.0
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 9.1e-99 364.0 191 93.7
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 2.0e-98 362.8 191 93.7
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 1.1e-96 357.1 190 92.1
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 5.5e-96 354.8 193 90.2
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 5.5e-96 354.8 193 90.2
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 1.2e-95 353.6 194 89.7
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 1.2e-95 353.6 194 89.7
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 1.0e-94 350.5 193 89.1
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 3.7e-92 342.0 182 91.8
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 3.1e-83 312.4 228 71.9
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 2.5e-72 276.2 187 73.8
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 8.8e-70 267.7 200 72.5
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 9.8e-69 264.2 193 69.9
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 2.4e-67 259.6 192 65.6
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 2.4e-67 259.6 151 80.8
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 2.7e-66 256.1 190 66.8
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 4.5e-66 255.4 187 66.8
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 4.5e-66 255.4 188 66.0
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 5.9e-66 255.0 187 66.3
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 1.0e-65 254.2 194 67.5
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 2.3e-65 253.1 188 67.0
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 2.5e-64 249.6 193 65.3
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 4.7e-63 245.4 193 62.7
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 6.1e-63 245.0 176 68.8
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 6.1e-63 245.0 151 76.2
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 2.3e-62 243.0 182 66.5
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 4.0e-62 242.3 184 65.2
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 4.0e-62 242.3 165 71.5
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 8.9e-62 241.1 145 78.6
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 8.9e-62 241.1 143 79.0
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 8.9e-62 241.1 172 69.2
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 8.9e-62 241.1 158 72.2
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 8.9e-62 241.1 158 72.2
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 8.9e-62 241.1 181 64.6
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 8.9e-62 241.1 181 64.6
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 1.5e-61 240.4 162 71.0
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 2.0e-61 240.0 191 65.4
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 2.0e-61 240.0 198 64.1
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 2.6e-61 239.6 145 77.2
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 3.4e-61 239.2 192 64.6
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 4.4e-61 238.8 163 69.9
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 5.7e-61 238.4 150 77.3
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 5.7e-61 238.4 178 66.3
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 5.7e-61 238.4 195 62.1
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 7.5e-61 238.0 145 75.9
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 1.7e-60 236.9 188 64.4
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 1.7e-60 236.9 178 66.3
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 1.7e-60 236.9 186 63.4
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 2.2e-60 236.5 183 63.4
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 2.2e-60 236.5 153 75.8
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 2.9e-60 236.1 182 62.6
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 4.9e-60 235.3 188 64.9
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 4.9e-60 235.3 151 74.8
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 6.4e-60 235.0 184 63.0
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 8.3e-60 234.6 183 63.4
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 1.4e-59 233.8 153 73.9
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 1.4e-59 233.8 182 64.8
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 1.8e-59 233.4 178 64.6
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 1.8e-59 233.4 186 66.1
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 2.4e-59 233.0 145 75.2
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 3.2e-59 232.6 182 62.6
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 3.2e-59 232.6 151 75.5
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 3.2e-59 232.6 183 62.8
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 3.2e-59 232.6 173 66.5
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 4.1e-59 232.3 173 68.8
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 4.1e-59 232.3 144 73.6
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 4.1e-59 232.3 175 66.3
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 1.2e-58 230.7 158 72.8
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 2.0e-58 229.9 192 64.1
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 4.6e-58 228.8 193 63.2
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 1.0e-57 227.6 216 54.6
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 1.3e-57 227.3 193 62.2
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 1.7e-57 226.9 185 62.7
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 3.9e-57 225.7 187 62.0
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 5.0e-57 225.3 159 67.3
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 1.1e-56 224.2 134 79.1
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 5.6e-56 221.9 145 73.8
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 5.6e-56 221.9 130 81.5
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 9.5e-56 221.1 151 71.5
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 2.1e-55 219.9 191 59.7
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 2.8e-55 219.5 161 68.3
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 6.2e-55 218.4 196 59.2
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 2.3e-54 216.5 183 61.2
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 1.2e-53 214.2 138 73.2
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 1.5e-53 213.8 172 61.6
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 3.4e-53 212.6 149 69.1
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 7.5e-53 211.5 132 75.8
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 1.9e-51 206.8 190 59.5
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 7.0e-51 204.9 200 54.5
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 8.3e-44 181.4 153 61.4
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 2.7e-42 176.4 136 61.0
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 3.5e-42 176.0 188 53.7
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 8.6e-41 171.4 171 54.4
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 2.6e-37 159.8 192 45.3
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 5.8e-37 158.7 91 80.2
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 1.2e-34 151.0 143 58.7
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 7.8e-34 148.3 101 72.3
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 2.3e-33 146.7 151 53.6
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 5.6e-32 142.1 192 45.8
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 8.9e-30 134.8 128 66.4
BraA04t16410Z Brassica rapa HOM05D006601 ORTHO05D008281 1.2e-29 134.4 128 64.8
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 1.1e-27 127.9 131 51.9
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 2.4e-27 126.7 147 51.0
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 2.3e-25 120.2 127 55.9
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 2.3e-25 120.2 127 55.9
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 1.3e-20 104.4 109 55.0
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 4.2e-19 99.4 124 45.2
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 1.2e-18 97.8 80 65.0
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 6.7e-17 92.0 105 53.3
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 2.5e-16 90.1 102 52.9
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 2.9e-12 76.6 55 69.1
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 3.0e-09 66.6 37 86.5
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 1.1e-08 64.7 31 83.9
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.6e-07 60.8 31 74.2
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 2.8e-07 60.1 87 42.5


User provided reference genes

Program Settings