Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 4.5e-40 167.5 89 100.0
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 1.4e-38 162.5 89 96.6
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 1.4e-38 162.5 89 96.6
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 1.4e-38 162.5 89 96.6
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 1.4e-38 162.5 89 96.6
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 1.4e-38 162.5 89 96.6
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 1.4e-38 162.5 89 96.6
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 1.6e-37 159.1 89 94.4
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 3.3e-35 151.4 91 89.0
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 1.4e-33 146.0 89 85.4
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 2.4e-33 145.2 89 83.1
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 2.4e-33 145.2 89 83.1
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 2.4e-33 145.2 89 83.1
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 9.1e-33 143.3 89 83.1
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 9.1e-33 143.3 89 83.1
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 1.2e-32 142.9 89 86.5
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 2.0e-32 142.1 89 85.4
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 7.7e-32 140.2 88 86.4
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 5.0e-31 137.5 89 83.1
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 1.7e-26 122.5 73 84.9
BraA09t40003Z Brassica rapa HOM05D005113 ORTHO05D006045 5.3e-25 117.5 89 71.9
A09p45390 Brassica napus HOM05D005113 ORTHO05D006045 4.7e-21 104.4 92 64.1
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 1.0e-20 103.2 78 73.1
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 1.3e-18 96.3 77 70.1
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 1.7e-18 95.9 73 67.1
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 6.3e-18 94.0 69 72.5
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 8.3e-18 93.6 71 71.8
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 1.4e-17 92.8 70 68.6
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 2.4e-17 92.0 68 70.6
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 9.1e-17 90.1 78 62.8
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 1.2e-16 89.7 70 67.1
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 1.2e-16 89.7 86 59.3
Carub.0004s1761 Capsella rubella HOM05D005113 ORTHO05D006045 1.6e-16 89.4 70 67.1
CARHR130110 Cardamine hirsuta HOM05D005113 ORTHO05D006045 1.6e-16 89.4 71 69.0
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 1.6e-16 89.4 68 64.7
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 1.6e-16 89.4 72 65.3
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 3.5e-16 88.2 67 70.1
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 3.5e-16 88.2 87 58.6
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 3.5e-16 88.2 69 68.1
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 3.5e-16 88.2 72 65.3
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 4.5e-16 87.8 73 65.8
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 5.9e-16 87.4 70 62.9
AT2G35850 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 7.7e-16 87.0 81 60.5
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 7.7e-16 87.0 83 60.2
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 7.7e-16 87.0 87 57.5
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 1.0e-15 86.7 80 56.2
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 1.0e-15 86.7 76 65.8
BraA04t18232Z Brassica rapa HOM05D005113 ORTHO05D006045 1.7e-15 85.9 83 60.2
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.7e-15 85.9 79 62.0
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 1.7e-15 85.9 71 60.6
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.7e-15 85.9 72 62.5
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 2.3e-15 85.5 71 64.8
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 2.9e-15 85.1 72 63.9
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 3.8e-15 84.7 83 59.0
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 3.8e-15 84.7 68 66.2
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 3.8e-15 84.7 73 64.4
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 5.0e-15 84.3 80 60.0
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 6.6e-15 84.0 77 61.0
BolC4t27961H Brassica oleracea HOM05D005113 ORTHO05D006045 1.1e-14 83.2 83 59.0
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 1.1e-14 83.2 75 61.3
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 1.9e-14 82.4 87 58.6
BcaC02g07662 Brassica carinata HOM05D005113 ORTHO05D006045 2.5e-14 82.0 83 57.8
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 2.5e-14 82.0 79 63.3
HPP92_013935 Vanilla planifolia HOM05D005113 ORTHO05D006045 2.5e-14 82.0 78 62.8
BcaB06g28884 Brassica carinata HOM05D005113 ORTHO05D006045 3.3e-14 81.6 85 58.8
BcaB01g03875 Brassica carinata HOM05D005113 ORTHO05D006045 4.2e-14 81.3 75 60.0
C04p64840 Brassica napus HOM05D005113 ORTHO05D006045 4.2e-14 81.3 86 55.8
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 5.5e-14 80.9 79 62.0
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 9.5e-14 80.1 92 53.3
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 2.8e-13 78.6 79 58.2
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 3.6e-13 78.2 97 52.6
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 4.7e-13 77.8 78 59.0
HPP92_012153 Vanilla planifolia HOM05D005113 ORTHO05D006045 8.0e-13 77.0 78 61.5
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.8e-12 75.9 68 55.9
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.8e-12 75.9 68 55.9
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 2.3e-12 75.5 107 48.6
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 2.3e-12 75.5 107 48.6
Prupe.7G090200 Prunus persica HOM05D005113 ORTHO05D006045 2.3e-12 75.5 90 54.4
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 4.0e-12 74.7 81 54.3
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 5.2e-12 74.3 98 51.0
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 5.2e-12 74.3 96 49.0
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 5.2e-12 74.3 98 50.0
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 6.8e-12 73.9 93 51.6
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 8.9e-12 73.6 69 50.7
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 8.9e-12 73.6 97 49.5
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 1.2e-11 73.2 91 50.5
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.2e-11 73.2 91 50.5
A03p19780 Brassica napus HOM05D005113 ORTHO05D006045 1.5e-11 72.8 89 49.4
C03p23070 Brassica napus HOM05D005113 ORTHO05D006045 1.5e-11 72.8 89 49.4
BraA03t11230Z Brassica rapa HOM05D005113 ORTHO05D006045 1.5e-11 72.8 89 49.4
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 3.4e-11 71.6 69 59.4
BcaC01g05698 Brassica carinata HOM05D005113 ORTHO05D006045 4.4e-11 71.2 89 48.3
BolC3t14709H Brassica oleracea HOM05D005113 ORTHO05D006045 4.4e-11 71.2 89 48.3
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 7.5e-11 70.5 79 53.2
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 1.3e-10 69.7 90 51.1
PSO384G1750 Papaver somniferum HOM05D005113 ORTHO05D006045 1.3e-10 69.7 103 41.7
Gorai.006G147100 Gossypium raimondii HOM05D005113 ORTHO05D006045 2.2e-10 68.9 81 51.9
Oeu045023.1 Olea europaea HOM05D005113 ORTHO05D006045 2.2e-10 68.9 70 58.6
Migut.L01845 Erythranthe guttata HOM05D005113 ORTHO05D006045 2.8e-10 68.6 73 53.4
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 3.7e-10 68.2 72 56.9
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 6.3e-10 67.4 75 53.3
Cfa019390 Carpinus fangiana HOM05D005113 ORTHO05D006045 1.4e-09 66.2 79 51.9
Cc06_g06930 Coffea canephora HOM05D005113 ORTHO05D006045 3.1e-09 65.1 54 66.7
COL.COLO4_29500 Corchorus olitorius HOM05D005113 ORTHO05D006045 4.1e-09 64.7 77 48.1
Thhalv10017703m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 7.0e-09 63.9 45 73.3
PSO384G4604 Papaver somniferum HOM05D005113 ORTHO05D006045 1.2e-08 63.2 99 42.4
Peaxi162Scf00203g00418 Petunia axillaris HOM05D005113 ORTHO05D006045 1.2e-08 63.2 79 54.4
arahy.Tifrunner.gnm1.ann1.TS08QV Arachis hypogaea HOM05D005113 ORTHO05D006045 1.6e-08 62.8 78 51.3
ECA238G1367 Erigeron canadensis HOM05D005113 ORTHO05D006045 1.6e-08 62.8 55 61.8
Sopen10g032200 Solanum pennellii HOM05D005113 ORTHO05D006045 4.5e-08 61.2 69 55.1
Migut.J00732 Erythranthe guttata HOM05D005113 ORTHO05D006045 5.9e-08 60.8 88 48.9
Manes.09G042200 Manihot esculenta HOM05D005113 ORTHO05D006045 5.9e-08 60.8 80 46.2
Solyc01g006760.3 Solanum lycopersicum HOM05D005113 ORTHO05D006045 5.9e-08 60.8 55 61.8
Solyc10g081690.1 Solanum lycopersicum HOM05D005113 ORTHO05D006045 5.9e-08 60.8 69 55.1
PGR004G1479 Punica granatum HOM05D005113 ORTHO05D006045 7.8e-08 60.5 83 48.2
PGSC0003DMG400028226 Solanum tuberosum HOM05D009103 ORTHO05D010883 7.8e-08 60.5 69 55.1
Medtr7g106840 Medicago truncatula HOM05D005113 ORTHO05D006045 1.3e-07 59.7 88 46.6
Sp4g18110 Schrenkiella parvula HOM05D005113 ORTHO05D006045 1.3e-07 59.7 43 69.8
Sopen01g002760 Solanum pennellii HOM05D005113 ORTHO05D006045 1.3e-07 59.7 55 60.0
TPR.G34441 Trifolium pratense HOM05D005113 ORTHO05D006045 1.3e-07 59.7 83 49.4
Lsat_1_v5_gn_2_101981 Lactuca sativa HOM05D005113 ORTHO05D006045 1.7e-07 59.3 50 64.0
HanXRQChr07g0196541 Helianthus annuus HOM05D005113 ORTHO05D006045 2.9e-07 58.5 88 43.2
arahy.Tifrunner.gnm1.ann1.7K7EQP Arachis hypogaea HOM05D005113 ORTHO05D006045 3.9e-07 58.2 73 52.1
DCAR_020680 Daucus carota HOM05D005113 ORTHO05D006045 3.9e-07 58.2 55 58.2
Nitab4.5_0000721g0120 Nicotiana tabacum HOM05D005113 ORTHO05D006045 3.9e-07 58.2 79 57.0
Oeu044708.1 Olea europaea HOM05D005113 ORTHO05D006045 5.0e-07 57.8 74 54.1
PGSC0003DMG400021340 Solanum tuberosum HOM05D005113 ORTHO05D006045 6.6e-07 57.4 60 60.0
Glyma.10G086500 Glycine max HOM05D005113 ORTHO05D006045 8.6e-07 57.0 63 57.1
AUR62038432 Chenopodium quinoa HOM05D005113 ORTHO05D006045 1.9e-06 55.8 58 53.4
Psat3g027480 Pisum sativum HOM05D005113 ORTHO05D006045 1.9e-06 55.8 90 44.4
AUR62036329 Chenopodium quinoa HOM05D005113 ORTHO05D006045 3.3e-06 55.1 57 54.4
Lj1g0007298 Lotus japonicus HOM05D005113 ORTHO05D006045 3.3e-06 55.1 98 41.8
DCAR_009075 Daucus carota HOM05D000059 ORTHO05D012409 7.3e-06 53.9 45 60.0
Lalb_Chr20g0111221 Lupinus albus HOM05D005113 ORTHO05D006045 7.3e-06 53.9 85 44.7
Lalb_Chr25g0287851 Lupinus albus HOM05D005113 ORTHO05D006045 9.5e-06 53.5 92 43.5


User provided reference genes

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