Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 4.4e-197 691.0 335 100.0
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 1.8e-182 642.5 321 96.3
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 9.9e-181 636.7 321 94.1
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 2.9e-180 635.2 321 93.8
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 2.1e-178 629.0 321 94.1
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 1.0e-177 626.7 314 95.2
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 3.4e-173 611.7 316 93.7
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 2.2e-172 609.0 316 93.0
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 2.2e-172 609.0 305 94.8
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 6.4e-172 607.4 351 85.8
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 1.1e-171 606.7 305 93.8
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 3.2e-171 605.1 315 92.7
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 3.3e-168 595.1 321 89.1
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 2.7e-162 575.5 315 87.3
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 2.3e-161 572.4 320 84.1
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 6.7e-161 570.9 319 83.7
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 1.5e-160 569.7 319 85.0
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 5.6e-160 567.8 318 84.6
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 1.3e-159 566.6 321 83.5
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 2.1e-159 565.8 319 83.7
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 6.2e-159 564.3 315 84.1
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 1.4e-158 563.1 319 84.3
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 2.4e-158 562.4 315 84.4
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 5.3e-158 561.2 321 83.5
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 1.2e-157 560.1 315 84.1
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 1.5e-157 559.7 316 82.9
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 2.6e-157 558.9 319 82.8
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 3.4e-157 558.5 316 83.9
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 5.8e-157 557.8 316 83.2
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 7.6e-157 557.4 321 82.6
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.7e-156 556.2 316 82.6
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 1.7e-156 556.2 316 82.9
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 2.2e-156 555.8 316 82.6
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 3.8e-156 555.1 316 82.9
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 3.8e-156 555.1 318 82.1
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 8.4e-156 553.9 318 82.1
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 8.4e-156 553.9 313 84.7
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 1.1e-155 553.5 318 81.1
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 1.1e-155 553.5 318 82.1
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 1.1e-155 553.5 321 82.6
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 4.2e-155 551.6 315 81.6
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 4.2e-155 551.6 314 83.8
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 5.5e-155 551.2 319 83.1
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 7.1e-155 550.8 321 81.3
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 1.6e-154 549.7 318 81.8
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 2.1e-154 549.3 303 85.8
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 2.1e-154 549.3 316 81.3
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 3.5e-154 548.5 319 81.5
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 4.6e-154 548.1 331 80.4
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 4.6e-154 548.1 319 81.2
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 6.0e-154 547.7 314 82.8
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 1.0e-153 547.0 313 82.7
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 1.3e-153 546.6 326 80.4
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 3.0e-153 545.4 305 83.6
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 5.1e-153 544.7 321 79.4
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 1.5e-152 543.1 311 80.4
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 1.9e-152 542.7 324 80.2
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 2.5e-152 542.3 321 81.6
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 3.3e-152 542.0 327 78.3
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 3.3e-152 542.0 318 80.8
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 5.6e-152 541.2 313 82.4
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 5.6e-152 541.2 319 79.9
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 9.6e-152 540.4 317 79.5
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 1.6e-151 539.7 318 80.5
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 1.4e-150 536.6 318 79.6
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 9.0e-150 533.9 297 84.8
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 4.5e-149 531.6 309 79.9
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 4.5e-149 531.6 299 83.9
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 1.1e-147 526.9 315 77.8
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 1.4e-147 526.6 390 67.4
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 4.6e-146 521.5 305 80.7
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 1.9e-144 516.2 303 81.8
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 5.7e-144 514.6 299 81.3
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 1.6e-143 513.1 303 79.9
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 8.2e-143 510.8 298 79.5
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 1.5e-141 506.5 297 80.1
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 1.5e-141 506.5 299 79.3
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 3.4e-141 505.4 321 75.7
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.8e-140 501.9 318 76.4
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 5.0e-140 501.5 319 76.8
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 3.6e-138 495.4 320 71.2
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 3.9e-137 491.9 291 78.7
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 5.1e-137 491.5 308 77.3
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 9.1e-134 480.7 313 72.2
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 1.5e-133 479.9 286 79.7
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 1.3e-132 476.9 298 74.8
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 8.5e-132 474.2 299 76.9
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 3.2e-131 472.2 299 76.6
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 4.2e-131 471.9 270 82.6
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 4.6e-130 468.4 314 68.8
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 6.1e-130 468.0 314 73.2
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.3e-129 466.1 299 76.3
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 8.2e-127 457.6 308 68.2
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 1.4e-126 456.8 265 80.8
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 3.4e-125 452.2 253 83.8
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 1.0e-124 450.7 285 77.2
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 2.3e-121 439.5 254 81.1
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 3.9e-121 438.7 305 70.5
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 3.6e-114 415.6 287 66.6
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 1.5e-112 410.2 299 69.9
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 7.5e-112 407.9 258 77.1
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 1.3e-111 407.1 269 73.2
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 3.5e-109 399.1 317 59.0
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 5.9e-109 398.3 234 81.6
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 1.2e-104 384.0 218 83.9
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 1.2e-101 374.0 315 57.8
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 1.4e-97 360.5 210 81.4
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 2.8e-90 336.3 326 52.1
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 1.5e-88 330.5 306 52.3
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 3.3e-75 286.2 297 50.5
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 9.5e-75 284.6 288 47.6
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 3.6e-74 282.7 204 65.2
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.1e-73 281.2 179 74.3
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 1.8e-73 280.4 178 77.0
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 5.6e-67 258.8 165 73.9
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 1.1e-65 254.6 146 81.5
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 2.4e-65 253.4 170 71.8
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 3.3e-59 233.0 184 63.0
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.7e-55 220.7 150 70.7
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 4.2e-54 216.1 119 84.9
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 2.7e-53 213.4 169 63.9
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 7.8e-53 211.8 129 76.0
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 2.8e-50 203.4 115 82.6
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 8.7e-44 181.8 110 79.1
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 2.5e-43 180.3 107 77.6
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 4.8e-42 176.0 118 70.3
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 3.4e-40 169.9 124 66.9
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 2.4e-38 163.7 105 71.4
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 7.1e-38 162.2 158 58.2
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 2.4e-33 147.1 317 34.4
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 2.9e-31 140.2 108 62.0
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 9.3e-30 135.2 324 34.3
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 4.6e-29 132.9 73 84.9
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 4.8e-26 122.9 71 81.7
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 1.2e-24 118.2 124 51.6
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 9.4e-22 108.6 69 73.9
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 2.7e-21 107.1 69 73.9
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 6.1e-21 105.9 301 29.2
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 8.8e-20 102.1 95 52.6
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 3.2e-14 83.6 42 92.9
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 3.2e-14 83.6 42 92.9
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 5.5e-14 82.8 55 70.9
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 4.7e-13 79.7 42 88.1
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 1.4e-12 78.2 286 25.9
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 3.9e-12 76.6 290 25.2
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 3.3e-11 73.6 307 26.4
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 7.4e-11 72.4 165 27.3
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 7.4e-11 72.4 52 63.5
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 9.7e-11 72.0 302 23.8
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 1.3e-10 71.6 283 26.5
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 2.2e-10 70.9 290 24.5
FvH4_2g19461 Fragaria vesca HOM05D005131 ORTHO05D006645 2.8e-10 70.5 66 59.1
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.7e-10 70.1 302 23.5
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 6.3e-10 69.3 306 24.5
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 1.1e-09 68.6 289 24.9
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 2.4e-09 67.4 315 24.8
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 3.1e-09 67.0 241 27.4
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 1.5e-08 64.7 217 28.6
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 2.0e-08 64.3 299 24.1
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 2.0e-08 64.3 214 27.1
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.6e-08 63.9 288 24.3
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 4.5e-08 63.2 299 23.7
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 4.5e-08 63.2 299 23.7
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.9e-08 62.8 288 24.7
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 5.9e-08 62.8 216 26.9
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 1.0e-07 62.0 288 24.7
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 1.3e-07 61.6 302 24.8
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.7e-07 61.2 288 24.7
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.7e-07 61.2 288 24.7
CAN.G1767.1 Capsicum annuum HOM05D000162 ORTHO05D000090 5.0e-07 59.7 78 44.9
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 6.5e-07 59.3 206 26.7
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.9e-06 57.8 206 26.7
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.4e-06 55.5 206 26.2


User provided reference genes

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