Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g09670 Schrenkiella parvula HOM05D007825 ORTHO05D009693 2.5e-38 161.8 89 100.0
BcaB01g00352 Brassica carinata HOM05D007825 ORTHO05D009693 2.9e-31 138.3 90 88.9
BcaC07g39631 Brassica carinata HOM05D007825 ORTHO05D009693 2.9e-31 138.3 90 88.9
A09p45710 Brassica napus HOM05D007825 ORTHO05D009693 2.9e-31 138.3 90 88.9
BraA09t40032Z Brassica rapa HOM05D007825 ORTHO05D009693 2.9e-31 138.3 90 88.9
C08p27910 Brassica napus HOM05D007825 ORTHO05D009693 3.8e-31 137.9 90 88.9
BolC8t50406H Brassica oleracea HOM05D007825 ORTHO05D009693 3.8e-31 137.9 90 88.9
Thhalv10010896m.g Eutrema salsugineum HOM05D007825 ORTHO05D009693 6.5e-31 137.1 90 86.7
AL5G33400 Arabidopsis lyrata HOM05D007825 ORTHO05D009693 2.1e-29 132.1 83 88.0
Carub.0005s1904 Capsella rubella HOM05D007825 ORTHO05D009693 8.0e-29 130.2 83 88.0
BcaB02g07824 Brassica carinata HOM05D007825 ORTHO05D009693 1.4e-28 129.4 85 85.9
AT3G52620 Arabidopsis thaliana HOM05D007825 ORTHO05D009693 4.0e-28 127.9 83 84.3
CARHR162440 Cardamine hirsuta HOM05D007825 ORTHO05D009693 2.0e-27 125.6 83 84.3
THA.LOC104799760 Tarenaya hassleriana HOM05D007825 ORTHO05D009693 5.0e-23 110.9 82 75.6
Aa31LG10G7690 Aethionema arabicum HOM05D007825 ORTHO05D009693 8.5e-23 110.2 84 72.6
Cpa.g.sc5.6 Carica papaya HOM05D007825 ORTHO05D009693 3.1e-17 91.7 85 64.7
Rhsim03G0074400 Rhododendron simsii HOM05D001257 ORTHO05D007181 4.5e-16 87.8 87 60.9
Cc06_g05960 Coffea canephora HOM05D007825 ORTHO05D009693 7.7e-16 87.0 84 57.1
Thecc.05G090800 Theobroma cacao HOM05D007825 ORTHO05D009693 1.0e-15 86.7 81 60.5
Actinidia07924 Actinidia chinensis HOM05D001354 ORTHO05D007486 1.3e-15 86.3 94 54.3
Duzib093G1765 Durio zibethinus HOM05D007825 ORTHO05D009693 1.7e-15 85.9 80 60.0
FAN05G0267 Fragaria x ananassa HOM05D007825 ORTHO05D009693 1.7e-15 85.9 84 60.7
Glyma.13G154500 Glycine max HOM05D007825 ORTHO05D009693 2.3e-15 85.5 80 58.8
FAN14G3782 Fragaria x ananassa HOM05D007825 ORTHO05D009693 6.6e-15 84.0 84 57.1
GSVIVG01033861001 Vitis vinifera HOM05D007825 ORTHO05D009693 6.6e-15 84.0 92 54.3
Lj5g0027478 Lotus japonicus HOM05D007825 ORTHO05D009693 2.5e-14 82.0 85 56.5
FAN02G3309 Fragaria x ananassa HOM05D007825 ORTHO05D009693 4.2e-14 81.3 84 56.0
FAN14G2292 Fragaria x ananassa HOM05D007825 ORTHO05D009693 4.2e-14 81.3 84 56.0
Prupe.7G104600 Prunus persica HOM05D007825 ORTHO05D009693 4.2e-14 81.3 90 51.1
Dinv31697 Davidia involucrata HOM05D007825 ORTHO05D009693 9.5e-14 80.1 100 54.0
Lalb_Chr17g0338831 Lupinus albus HOM05D007825 ORTHO05D009693 9.5e-14 80.1 85 54.1
Potri.006G211600 Populus trichocarpa HOM05D007825 ORTHO05D009693 9.5e-14 80.1 85 52.9
Potri.016G078700 Populus trichocarpa HOM05D007825 ORTHO05D009693 9.5e-14 80.1 94 53.2
Sc07g0005630 Simmondsia chinensis HOM05D007825 ORTHO05D009693 1.2e-13 79.7 85 56.5
Sabra06G0163100 Salix brachista HOM05D001354 ORTHO05D007486 1.6e-13 79.3 93 49.5
TWI74G1133 Tripterygium wilfordii HOM05D007825 ORTHO05D009693 1.6e-13 79.3 88 54.5
Atru.chr2.2492 Acer truncatum HOM05D007825 ORTHO05D009693 3.6e-13 78.2 90 51.1
EL10Ac7g16903 Beta vulgaris HOM05D007825 ORTHO05D009693 3.6e-13 78.2 89 52.8
Solyc09g009930.2 Solanum lycopersicum HOM05D007825 ORTHO05D009693 3.6e-13 78.2 83 54.2
Sopen09g004680 Solanum pennellii HOM05D007825 ORTHO05D009693 3.6e-13 78.2 83 54.2
Sabra16G0083000 Salix brachista HOM05D007825 ORTHO05D009693 4.7e-13 77.8 96 52.1
Lalb_Chr10g0096381 Lupinus albus HOM05D007825 ORTHO05D009693 6.1e-13 77.4 82 56.1
QL07p038635 Quercus lobata HOM05D007825 ORTHO05D009693 6.1e-13 77.4 91 52.7
arahy.Tifrunner.gnm1.ann1.KBFV5H Arachis hypogaea HOM05D001354 ORTHO05D007486 1.4e-12 76.3 92 56.5
Eucgr.A02998 Eucalyptus grandis HOM05D007825 ORTHO05D009693 1.8e-12 75.9 83 53.0
Manes.09G054200 Manihot esculenta HOM05D007825 ORTHO05D009693 1.8e-12 75.9 94 53.2
MD12G1027000 Malus domestica HOM05D007825 ORTHO05D009693 3.0e-12 75.1 86 50.0
Medtr1g059820 Medicago truncatula HOM05D007825 ORTHO05D009693 3.0e-12 75.1 92 50.0
TPR.G9902 Trifolium pratense HOM05D007825 ORTHO05D009693 3.0e-12 75.1 84 51.2
CiPaw.09G015200 Carya illinoinensis HOM05D007825 ORTHO05D009693 5.2e-12 74.3 95 49.5
COL.COLO4_29710 Corchorus olitorius HOM05D007825 ORTHO05D009693 5.2e-12 74.3 95 53.7
Glyma.19G194978 Glycine max HOM05D007825 ORTHO05D009693 5.2e-12 74.3 85 52.9
Glyma.09G026600 Glycine max HOM05D007825 ORTHO05D009693 8.9e-12 73.6 80 55.0
Lalb_Chr02g0154901 Lupinus albus HOM05D007825 ORTHO05D009693 8.9e-12 73.6 80 52.5
RcHm_v2.0_Chr3g0474201 Rosa chinensis HOM05D007825 ORTHO05D009693 8.9e-12 73.6 85 49.4
CsaV3_3G037370 Cucumis sativus L. HOM05D007825 ORTHO05D009693 1.5e-11 72.8 101 48.5
Ca_00897_v3 Cicer arietinum L. HOM05D007825 ORTHO05D009693 2.0e-11 72.4 85 50.6
arahy.Tifrunner.gnm1.ann1.S2NT6M Arachis hypogaea HOM05D007825 ORTHO05D009693 3.4e-11 71.6 87 57.5
MD14G1027100 Malus domestica HOM05D007825 ORTHO05D009693 4.4e-11 71.2 93 48.4
Haze_12107 Corylus avellana HOM05D001354 ORTHO05D007486 7.5e-11 70.5 96 46.9
Peaxi162Scf00404g00115 Petunia axillaris HOM05D007825 ORTHO05D009693 7.5e-11 70.5 83 49.4
Phvul.001G191100 Phaseolus vulgaris HOM05D007825 ORTHO05D009693 7.5e-11 70.5 86 51.2
PGSC0003DMG400008872 Solanum tuberosum HOM05D007825 ORTHO05D009693 7.5e-11 70.5 83 51.8
Phvul.003G041100 Phaseolus vulgaris HOM05D007825 ORTHO05D009693 1.7e-10 69.3 88 48.9
ClCG10G018870 Citrullus lanatus HOM05D007825 ORTHO05D009693 2.2e-10 68.9 100 46.0
MELO3C009481.2 Cucumis melo HOM05D007825 ORTHO05D009693 2.2e-10 68.9 101 46.5
Psat3g207080 Pisum sativum HOM05D007825 ORTHO05D009693 2.2e-10 68.9 84 47.6
arahy.Tifrunner.gnm1.ann1.24RTVW Arachis hypogaea HOM05D007825 ORTHO05D009693 3.7e-10 68.2 81 54.3
arahy.Tifrunner.gnm1.ann1.L43FYW Arachis hypogaea HOM05D007825 ORTHO05D009693 3.7e-10 68.2 81 54.3
Nn2g14176 Nelumbo nucifera HOM05D007825 ORTHO05D009693 3.7e-10 68.2 96 50.0
Ah.15g090680 Amaranthus hybridus HOM05D007825 ORTHO05D009693 6.3e-10 67.4 86 46.5
Glyma.10G074000 Glycine max HOM05D007825 ORTHO05D009693 8.3e-10 67.0 81 50.6
DCAR_013400 Daucus carota HOM05D007825 ORTHO05D009693 1.1e-09 66.6 78 47.4
TAR633G2289 Trochodendron aralioides HOM05D007825 ORTHO05D009693 1.1e-09 66.6 90 48.9
DCAR_013397 Daucus carota HOM05D007825 ORTHO05D009693 1.4e-09 66.2 78 48.7
AUR62006195 Chenopodium quinoa HOM05D007825 ORTHO05D009693 5.4e-09 64.3 81 45.7
SalBow3G1626 Salvia bowleyana HOM05D007825 ORTHO05D009693 5.4e-09 64.3 102 43.1
Cfa009073 Carpinus fangiana HOM05D007825 ORTHO05D009693 1.2e-08 63.2 96 44.8
Migut.J01022 Erythranthe guttata HOM05D007825 ORTHO05D009693 1.2e-08 63.2 106 44.3
Aqoxy2G01123 Aquilegia oxysepala HOM05D007825 ORTHO05D009693 2.0e-08 62.4 85 48.2
Aqoxy4G02759 Aquilegia oxysepala HOM05D007825 ORTHO05D009693 2.0e-08 62.4 94 44.7
Sed0008191 Sechium edule HOM05D007825 ORTHO05D009693 1.3e-07 59.7 97 41.2
TAR623G0830 Trochodendron aralioides HOM05D007825 ORTHO05D009693 1.7e-07 59.3 94 43.6
AUR62037026 Chenopodium quinoa HOM05D007825 ORTHO05D009693 1.5e-06 56.2 80 42.5
MBI17_g08331_MAGBIO Magnolia biondii HOM05D007825 ORTHO05D009693 2.5e-06 55.5 78 42.3
Nn6g34873 Nelumbo nucifera HOM05D007825 ORTHO05D009693 7.3e-06 53.9 81 43.2


User provided reference genes

Program Settings