Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 3.5e-55 218.0 107 100.0
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 2.2e-49 198.7 107 91.6
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 1.1e-48 196.4 108 90.7
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 3.2e-48 194.9 108 88.9
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 1.2e-47 193.0 109 88.1
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 2.7e-47 191.8 108 88.0
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 7.8e-47 190.3 108 88.0
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 3.3e-45 184.9 107 82.2
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 7.3e-45 183.7 107 82.2
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 3.6e-44 181.4 107 81.3
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 6.2e-44 180.6 107 82.2
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 3.1e-43 178.3 107 79.4
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 3.1e-43 178.3 107 79.4
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 5.2e-43 177.6 107 78.5
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 5.2e-43 177.6 107 79.4
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 6.8e-43 177.2 107 79.4
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 6.8e-43 177.2 107 79.4
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.3e-41 172.9 107 77.6
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 2.1e-39 165.6 107 72.9
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 2.1e-39 165.6 107 72.9
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 7.8e-39 163.7 107 72.0
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 1.3e-38 162.9 107 71.0
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 1.9e-37 159.1 107 67.3
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 7.3e-37 157.1 107 70.1
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 2.1e-36 155.6 95 78.9
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 6.2e-36 154.1 108 67.6
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 6.2e-36 154.1 98 74.5
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.8e-35 152.5 107 67.3
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.8e-35 152.5 108 66.7
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.8e-35 152.5 108 66.7
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 3.1e-35 151.8 108 64.8
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 5.2e-35 151.0 108 66.7
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 6.9e-35 150.6 107 64.5
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 6.9e-35 150.6 107 62.6
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 2.6e-34 148.7 107 64.5
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 2.6e-34 148.7 108 64.8
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 2.6e-34 148.7 107 61.7
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 5.8e-34 147.5 108 63.9
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 7.6e-34 147.1 107 62.6
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 7.6e-34 147.1 107 63.6
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 1.7e-33 146.0 108 63.9
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.7e-33 146.0 107 61.7
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 2.2e-33 145.6 108 63.0
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 2.9e-33 145.2 108 62.0
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 3.8e-33 144.8 107 62.6
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 3.8e-33 144.8 106 64.2
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 6.4e-33 144.1 107 62.6
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 6.4e-33 144.1 107 61.7
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 8.4e-33 143.7 108 63.9
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 8.4e-33 143.7 108 63.0
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.1e-32 143.3 108 63.0
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 1.4e-32 142.9 107 62.6
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 3.2e-32 141.7 108 63.9
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 4.2e-32 141.4 86 75.6
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 4.2e-32 141.4 107 61.7
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 5.4e-32 141.0 107 59.8
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 7.1e-32 140.6 108 62.0
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 7.1e-32 140.6 108 62.0
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 9.3e-32 140.2 107 61.7
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.2e-31 139.8 107 62.6
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 1.6e-31 139.4 107 62.6
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 1.6e-31 139.4 108 61.1
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 1.6e-31 139.4 108 61.1
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 2.7e-31 138.7 108 60.2
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 2.7e-31 138.7 107 59.8
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 2.7e-31 138.7 107 58.9
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 2.7e-31 138.7 108 61.1
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 2.7e-31 138.7 104 63.5
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 3.5e-31 138.3 85 78.8
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 3.5e-31 138.3 85 78.8
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 6.0e-31 137.5 107 59.8
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 6.0e-31 137.5 108 59.3
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 7.8e-31 137.1 108 60.2
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 7.8e-31 137.1 108 59.3
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 7.8e-31 137.1 107 59.8
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 7.8e-31 137.1 107 57.0
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 1.3e-30 136.3 107 58.9
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 1.7e-30 136.0 107 59.8
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 2.3e-30 135.6 107 55.1
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 2.3e-30 135.6 107 57.0
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 3.0e-30 135.2 107 56.1
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 3.9e-30 134.8 107 58.9
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 5.1e-30 134.4 108 60.2
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 5.1e-30 134.4 107 54.2
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.1e-29 133.3 107 57.9
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 1.5e-29 132.9 109 58.7
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.9e-29 132.5 107 58.9
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 1.9e-29 132.5 107 57.9
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 1.9e-29 132.5 107 60.7
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 1.9e-29 132.5 106 56.6
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 2.5e-29 132.1 108 59.3
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 3.3e-29 131.7 107 57.0
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 4.3e-29 131.3 107 56.1
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 5.6e-29 131.0 108 59.3
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 5.6e-29 131.0 107 55.1
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 5.6e-29 131.0 108 56.5
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 9.6e-29 130.2 107 57.0
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 1.3e-28 129.8 107 58.9
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 1.3e-28 129.8 107 54.2
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 1.3e-28 129.8 107 56.1
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 1.6e-28 129.4 108 61.1
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 2.1e-28 129.0 85 70.6
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 2.1e-28 129.0 107 55.1
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 3.6e-28 128.3 107 57.9
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 4.8e-28 127.9 107 54.2
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 4.8e-28 127.9 108 60.2
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 8.1e-28 127.1 108 59.3
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 2.4e-27 125.6 107 51.4
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 3.1e-27 125.2 108 59.3
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 6.9e-27 124.0 108 57.4
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 6.9e-27 124.0 93 63.4
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 6.9e-27 124.0 108 59.3
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 1.5e-26 122.9 108 57.4
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 3.4e-26 121.7 107 52.3
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 3.4e-26 121.7 107 50.5
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 5.8e-26 120.9 111 55.0
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 5.8e-26 120.9 88 64.8
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 1.3e-25 119.8 107 52.3
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 3.8e-25 118.2 85 67.1
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 3.8e-25 118.2 107 51.4
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 8.4e-25 117.1 90 60.0
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 8.4e-25 117.1 86 62.8
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 8.4e-25 117.1 90 62.2
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 1.1e-24 116.7 103 56.3
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 1.4e-24 116.3 103 49.5
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 1.9e-24 115.9 107 51.4
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 1.9e-24 115.9 85 64.7
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 1.9e-24 115.9 85 64.7
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 3.2e-24 115.2 108 50.9
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 4.2e-24 114.8 107 47.7
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 7.1e-24 114.0 84 63.1
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 7.1e-24 114.0 87 63.2
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 9.3e-24 113.6 84 63.1
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 2.1e-23 112.5 86 60.5
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.0e-22 110.2 107 52.3
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 1.9e-21 105.9 71 62.0
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 5.6e-21 104.4 85 60.0
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 9.6e-21 103.6 88 58.0
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 4.8e-20 101.3 86 59.3
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 6.2e-20 100.9 85 54.1
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 2.6e-18 95.5 109 43.1
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 4.5e-18 94.7 85 50.6
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 9.9e-18 93.6 108 42.6
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 2.2e-17 92.4 109 42.2
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 1.1e-16 90.1 106 40.6
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 7.1e-16 87.4 65 61.5
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 1.2e-15 86.7 85 51.8
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 1.2e-15 86.7 95 48.4
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 6.0e-15 84.3 87 52.9
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 7.9e-15 84.0 89 43.8
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 1.1e-13 80.1 81 51.9
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 2.5e-13 79.0 110 45.5
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 1.3e-12 76.6 110 40.0
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 3.1e-11 72.0 65 53.8
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 9.0e-11 70.5 58 58.6
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 9.0e-11 70.5 111 38.7
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 1.5e-10 69.7 62 48.4
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 6.7e-06 54.3 64 42.2
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 6.7e-06 54.3 64 42.2


User provided reference genes

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