Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 7.5e-290 1000.0 563 100.0
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 5.5e-208 728.0 573 74.7
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 2.1e-175 619.8 572 65.9
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 3.6e-175 619.0 573 65.8
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 2.8e-172 609.4 565 66.9
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 2.8e-172 609.4 565 66.9
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 1.7e-169 600.1 565 68.0
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 6.6e-161 571.6 566 64.3
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 1.5e-160 570.5 572 62.2
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 9.5e-160 567.8 566 64.0
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 8.3e-156 554.7 601 64.1
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 3.2e-147 526.2 564 64.4
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 8.4e-124 448.4 610 52.8
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 1.3e-100 371.3 663 44.3
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 7.1e-99 365.5 688 42.4
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 5.2e-57 226.5 296 48.0
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 2.6e-56 224.2 307 46.9
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 4.4e-56 223.4 304 48.4
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 1.7e-55 221.5 310 47.1
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 5.4e-54 216.5 309 45.3
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 7.0e-54 216.1 309 45.3
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 2.0e-53 214.5 297 46.5
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 2.0e-53 214.5 283 47.0
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 5.9e-53 213.0 279 48.0
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 2.2e-52 211.1 290 46.2
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 8.5e-52 209.1 297 45.8
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 1.5e-51 208.4 286 46.5
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 4.2e-51 206.8 297 45.8
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 5.5e-51 206.5 323 43.7
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 7.2e-51 206.1 269 46.5
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.2e-50 205.3 318 43.7
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 2.0e-48 198.0 335 40.6
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 2.0e-48 198.0 311 43.1
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 2.0e-48 198.0 434 40.6
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 2.6e-48 197.6 301 46.2
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 2.6e-48 197.6 310 43.9
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.3e-47 195.3 301 42.9
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 4.9e-47 193.4 265 46.4
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 1.1e-46 192.2 303 42.2
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 1.4e-46 191.8 295 43.1
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 1.4e-46 191.8 286 43.4
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 1.8e-46 191.4 305 43.3
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 1.8e-46 191.4 265 46.0
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 1.8e-46 191.4 306 43.8
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 4.1e-46 190.3 574 34.3
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 7.0e-46 189.5 297 44.1
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 1.2e-45 188.7 299 43.5
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 1.6e-45 188.3 608 34.0
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 2.7e-45 187.6 302 45.4
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 2.7e-45 187.6 274 44.5
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 1.0e-44 185.7 304 41.8
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 1.3e-44 185.3 302 43.0
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 1.7e-44 184.9 471 36.1
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 2.9e-44 184.1 326 41.7
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 2.9e-44 184.1 279 43.4
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 3.8e-44 183.7 325 42.2
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 8.6e-44 182.6 310 42.3
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.5e-43 181.8 285 43.9
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.5e-43 181.8 285 43.9
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 2.5e-43 181.0 304 43.8
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 3.3e-43 180.6 273 44.7
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 3.3e-43 180.6 294 41.5
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 4.2e-43 180.3 317 40.4
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 7.2e-43 179.5 333 38.4
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 7.2e-43 179.5 333 38.4
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 1.2e-42 178.7 306 42.2
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 2.8e-42 177.6 315 41.3
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 2.8e-42 177.6 294 38.8
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 4.7e-42 176.8 291 43.0
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 4.7e-42 176.8 295 39.3
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 8.0e-42 176.0 499 36.7
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 1.4e-41 175.3 588 34.7
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 1.8e-41 174.9 286 37.8
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 1.8e-41 174.9 278 39.6
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 1.2e-40 172.2 305 40.3
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 2.0e-40 171.4 307 39.1
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 3.4e-40 170.6 283 41.7
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 7.5e-40 169.5 325 39.4
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 7.5e-40 169.5 278 41.0
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 9.8e-40 169.1 595 32.3
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 9.8e-40 169.1 304 37.5
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 9.8e-40 169.1 278 40.6
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 1.3e-39 168.7 301 41.2
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 1.7e-39 168.3 290 41.7
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 2.2e-39 167.9 595 32.1
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 2.2e-39 167.9 241 42.3
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 2.9e-39 167.5 317 37.9
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 2.9e-39 167.5 282 40.8
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 6.4e-39 166.4 277 39.7
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 1.1e-38 165.6 309 39.2
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 1.1e-38 165.6 237 42.2
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 1.4e-38 165.2 268 43.7
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 2.4e-38 164.5 303 40.3
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 2.4e-38 164.5 287 40.8
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 3.2e-38 164.1 275 40.0
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 4.1e-38 163.7 287 39.4
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 4.1e-38 163.7 544 31.6
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 5.4e-38 163.3 538 33.5
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 2.0e-37 161.4 276 38.4
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 2.7e-37 161.0 261 43.3
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 2.7e-37 161.0 290 39.7
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 2.7e-37 161.0 268 42.2
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 5.0e-36 156.8 333 36.3
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 8.6e-36 156.0 364 36.3
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 1.9e-35 154.8 326 38.7
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 1.5e-32 145.2 285 36.8
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 1.5e-32 145.2 226 41.6
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 7.5e-32 142.9 286 38.8
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 9.2e-30 136.0 325 32.3
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 1.1e-27 129.0 268 33.6
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 3.3e-27 127.5 233 42.1
BraA07t29844Z Brassica rapa HOM05D005322 ORTHO05D024197 4.3e-27 127.1 76 89.5
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 4.3e-27 127.1 499 30.5
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 5.6e-27 126.7 258 36.8
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 5.6e-27 126.7 147 49.7
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 4.7e-26 123.6 298 35.6
A07p21620 Brassica napus HOM05D005322 ORTHO05D024197 2.3e-25 121.3 141 53.9
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 4.4e-24 117.1 193 42.0
BolC6t37311H Brassica oleracea HOM05D005322 ORTHO05D024197 1.3e-23 115.5 77 79.2
BcaB01g00277 Brassica carinata HOM05D000319 ORTHO05D024197 4.9e-23 113.6 91 68.1
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 3.2e-22 110.9 181 38.7
C06p21260 Brassica napus HOM05D005322 ORTHO05D024197 4.1e-22 110.5 77 76.6
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 5.1e-20 103.6 283 33.6
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 8.6e-20 102.8 382 32.5
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 1.5e-19 102.1 250 35.2
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 1.4e-17 95.5 202 36.6
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 3.7e-15 87.4 228 34.6
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 8.4e-15 86.3 266 31.2
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 3.2e-14 84.3 263 29.3
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 7.8e-13 79.7 317 27.4
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 6.6e-12 76.6 247 27.5
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 4.7e-10 70.5 152 38.2


User provided reference genes

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