Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 2.7e-106 388.7 192 100.0
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 1.3e-100 369.8 193 95.3
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 5.4e-99 364.4 193 93.8
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 1.3e-97 359.8 194 91.8
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 3.3e-96 355.1 194 92.3
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 1.2e-95 353.2 195 92.8
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.2e-85 320.1 203 81.3
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 1.4e-83 313.2 192 83.9
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.7e-82 308.9 200 80.5
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 6.0e-82 307.8 191 84.3
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 7.9e-82 307.4 195 82.6
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 7.9e-82 307.4 191 83.8
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.3e-81 306.6 178 86.0
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 2.5e-80 302.4 195 83.1
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 3.3e-80 302.0 195 82.1
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 2.1e-79 299.3 195 82.6
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 2.8e-79 298.9 198 80.3
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 3.7e-79 298.5 196 80.6
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 3.7e-79 298.5 196 80.6
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 1.1e-78 297.0 194 81.4
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 6.9e-78 294.3 191 81.7
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 2.6e-77 292.4 200 75.5
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 1.4e-67 260.0 198 66.2
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 1.4e-67 260.0 201 66.7
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 4.6e-66 255.0 190 66.3
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 3.3e-64 248.8 197 62.9
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 5.7e-64 248.1 199 65.3
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 7.4e-64 247.7 200 61.0
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 3.7e-63 245.4 205 59.5
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 6.3e-63 244.6 198 62.6
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 8.2e-63 244.2 193 64.2
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 6.9e-62 241.1 197 64.0
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 6.9e-62 241.1 197 64.0
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 9.0e-62 240.7 206 62.1
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 1.2e-61 240.4 205 61.5
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.2e-61 240.4 196 63.3
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 5.9e-61 238.0 204 61.8
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.2e-60 236.1 207 61.8
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 5.0e-60 235.0 196 62.8
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 1.4e-59 233.4 205 61.0
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.9e-59 233.0 215 59.5
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.5e-59 232.6 202 62.9
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 9.4e-59 230.7 196 61.7
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.6e-58 229.9 198 63.1
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.6e-58 228.4 204 58.3
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.6e-58 228.4 202 60.4
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 4.6e-58 228.4 195 61.0
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 4.6e-58 228.4 202 60.4
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 4.6e-58 228.4 203 61.6
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 7.9e-58 227.6 205 57.6
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.9e-58 227.6 205 57.6
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.8e-57 226.5 202 60.4
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.8e-57 226.5 195 61.0
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.3e-57 226.1 203 59.1
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 8.8e-57 224.2 207 60.4
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 1.1e-56 223.8 210 55.7
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.9e-56 223.0 201 57.2
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 1.9e-56 223.0 201 61.2
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.9e-56 223.0 197 57.4
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.9e-56 223.0 214 57.5
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 1.9e-56 223.0 216 57.4
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 1.9e-56 223.0 215 60.9
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 4.3e-56 221.9 189 61.9
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 7.4e-56 221.1 212 57.1
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 2.8e-55 219.2 199 59.3
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 4.8e-55 218.4 209 56.9
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 8.2e-55 217.6 191 59.2
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 1.4e-54 216.9 203 57.6
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.4e-54 216.9 203 56.2
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.4e-54 216.9 208 56.7
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.1e-54 215.3 197 58.9
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 9.1e-54 214.2 200 57.5
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.2e-53 213.8 188 59.6
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 2.0e-53 213.0 209 56.5
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 2.0e-53 213.0 207 54.6
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.6e-53 212.6 196 56.1
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.3e-52 210.3 197 56.3
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.3e-52 210.3 212 54.2
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 1.7e-52 209.9 225 52.9
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 1.7e-52 209.9 202 55.9
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 2.9e-52 209.1 210 54.8
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 1.1e-51 207.2 213 53.1
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.1e-51 207.2 212 54.7
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 2.5e-51 206.1 219 53.0
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 3.2e-51 205.7 194 56.2
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.2e-50 203.8 209 55.5
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.6e-50 203.4 215 53.5
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 1.6e-50 203.4 206 52.4
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 2.1e-50 203.0 214 55.1
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 4.7e-50 201.8 211 51.7
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.0e-49 200.7 188 55.9
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.0e-49 200.7 208 54.8
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 1.0e-49 200.7 216 50.9
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.8e-49 199.9 206 51.9
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.1e-48 197.2 222 48.2
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 1.1e-48 197.2 212 54.2
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.5e-48 196.8 206 51.5
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 3.3e-48 195.7 209 51.2
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 3.3e-48 195.7 210 52.4
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 1.3e-47 193.7 207 54.6
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.2e-47 193.0 182 58.8
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 2.8e-47 192.6 203 52.7
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.8e-47 192.6 164 61.0
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 3.7e-47 192.2 189 53.4
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.1e-46 189.1 194 53.6
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.2e-45 187.2 200 52.0
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 3.4e-45 185.7 203 48.8
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 4.5e-45 185.3 151 61.6
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.1e-43 180.6 157 58.6
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 1.2e-42 177.2 210 46.2
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 6.1e-42 174.9 209 48.8
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 1.8e-41 173.3 133 66.9
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 1.8e-41 173.3 185 53.0
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.1e-38 164.1 175 52.0
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.8e-38 163.3 172 50.0
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 1.8e-38 163.3 217 46.5
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 1.8e-38 163.3 208 44.7
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 1.2e-37 160.6 188 43.6
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 1.0e-36 157.5 198 43.4
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 1.9e-35 153.3 211 45.0
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 4.2e-35 152.1 127 59.1
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.1e-34 149.8 190 44.7
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 2.7e-34 149.4 223 39.5
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 1.4e-33 147.1 143 53.1
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 5.2e-33 145.2 181 43.6
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 6.7e-33 144.8 192 41.1
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.2e-32 144.1 202 43.1
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 7.5e-32 141.4 221 39.4
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 3.7e-31 139.0 113 63.7
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 2.7e-29 132.9 138 52.2
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 3.5e-29 132.5 183 43.7
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.9e-28 129.4 131 48.1
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 8.5e-28 127.9 98 62.2
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 3.2e-27 125.9 144 47.9
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 9.4e-27 124.4 171 39.2
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.6e-26 123.6 130 46.9
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 5.2e-25 118.6 194 37.6
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.5e-24 117.1 172 41.9
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 3.4e-24 115.9 169 39.1
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.1e-22 110.9 109 49.5
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 4.1e-22 109.0 69 78.3
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 5.4e-22 108.6 195 37.9
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.2e-21 107.5 122 53.3
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.0e-20 104.4 122 52.5
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 1.3e-20 104.0 87 54.0
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 1.7e-20 103.6 94 52.1
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 2.3e-20 103.2 65 80.0
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 5.0e-20 102.1 133 39.1
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.8e-17 93.6 86 47.7
AT4G18692 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 5.7e-16 88.6 62 79.0
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 9.8e-16 87.8 180 37.2
AT3G53342 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 1.3e-15 87.4 62 79.0
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.3e-15 87.4 136 35.3
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.3e-15 87.4 136 35.3
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 5.4e-14 82.0 115 47.0
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 1.2e-13 80.9 111 38.7
AT1G55710 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 2.0e-13 80.1 62 74.2
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 2.9e-12 76.3 112 48.2
C03p31080 Brassica napus HOM05D004429 ORTHO05D103234 3.8e-12 75.9 55 78.2
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 8.6e-12 74.7 162 35.8
BcaC08g44641 Brassica carinata HOM05D004429 ORTHO05D021447 2.3e-09 66.6 41 82.9
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 6.8e-09 65.1 103 41.7
Ah.00g000610 Amaranthus hybridus HOM05D004429 ORTHO05D005583 5.4e-06 55.5 66 47.0


User provided reference genes

Program Settings