Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g08700 Schrenkiella parvula HOM05D008508 ORTHO05D003325 1.7e-90 336.3 211 100.0
Thhalv10010719m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 1.0e-66 257.3 215 82.3
Carub.0005s2025 Capsella rubella HOM05D008508 ORTHO05D003325 1.3e-61 240.4 211 76.8
BolC8t50501H Brassica oleracea HOM05D008508 ORTHO05D003325 5.4e-60 235.0 216 82.4
AT3G53670 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 3.5e-59 232.3 213 77.5
AL5G34640 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 4.6e-59 231.9 214 69.2
BraA09t40129Z Brassica rapa HOM05D008508 ORTHO05D003325 6.7e-58 228.0 215 80.5
BcaC07g39726 Brassica carinata HOM05D008508 ORTHO05D003325 4.8e-56 221.9 221 78.3
C08p28980 Brassica napus HOM05D008508 ORTHO05D003325 4.8e-56 221.9 221 78.3
BcaB01g00256 Brassica carinata HOM05D008508 ORTHO05D003325 6.9e-55 218.0 212 75.0
A09p46660 Brassica napus HOM05D008508 ORTHO05D003325 6.9e-55 218.0 217 79.3
BraA07t29860Z Brassica rapa HOM05D008508 ORTHO05D003325 1.6e-51 206.8 216 78.2
A07p21780 Brassica napus HOM05D008508 ORTHO05D003325 7.4e-49 198.0 212 74.1
BcaB02g07768 Brassica carinata HOM05D008508 ORTHO05D003325 9.0e-47 191.0 214 72.9
Aa31LG10G9300 Aethionema arabicum HOM05D008508 ORTHO05D003325 4.2e-44 182.2 213 57.3
BolC6t37349H Brassica oleracea HOM05D008508 ORTHO05D003325 2.4e-39 166.4 212 66.0
BcaB01g03773 Brassica carinata HOM05D008508 ORTHO05D003325 9.0e-39 164.5 213 50.7
Sp4g19810 Schrenkiella parvula HOM05D008508 ORTHO05D003325 2.6e-38 162.9 213 61.5
C06p21610 Brassica napus HOM05D008508 ORTHO05D003325 1.3e-37 160.6 212 65.1
BcaC01g05613 Brassica carinata HOM05D008508 ORTHO05D003325 1.7e-37 160.2 213 55.4
C03p24300 Brassica napus HOM05D008508 ORTHO05D003325 1.7e-37 160.2 213 55.4
BolC3t14826H Brassica oleracea HOM05D008508 ORTHO05D003325 1.7e-37 160.2 213 55.4
Carub.0004s1941 Capsella rubella HOM05D008508 ORTHO05D003325 3.8e-37 159.1 211 60.2
BcaC08g44645 Brassica carinata HOM05D008508 ORTHO05D003325 8.5e-37 157.9 212 64.6
Aa31LG5G22930 Aethionema arabicum HOM05D008508 ORTHO05D003325 9.4e-36 154.5 213 57.3
AT2G37480 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 1.2e-35 154.1 215 56.7
THA.LOC104805432 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 2.1e-35 153.3 166 59.0
AL4G33940 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 3.6e-35 152.5 213 59.2
A03p20680 Brassica napus HOM05D008508 ORTHO05D003325 1.4e-34 150.6 213 56.3
BraA03t11309Z Brassica rapa HOM05D008508 ORTHO05D003325 1.4e-34 150.6 213 56.3
CARHR163580 Cardamine hirsuta HOM05D008508 ORTHO05D003325 1.8e-34 150.2 254 52.8
AL4G33980 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 4.3e-33 145.6 215 55.3
Thhalv10017918m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 4.3e-33 145.6 211 57.3
BcaC02g11856 Brassica carinata HOM05D008508 ORTHO05D003325 2.8e-32 142.9 212 60.8
BolC4t22647H Brassica oleracea HOM05D008508 ORTHO05D003325 3.7e-32 142.5 212 60.4
C04p10560 Brassica napus HOM05D008508 ORTHO05D003325 8.2e-32 141.4 212 60.4
BolC4t28099H Brassica oleracea HOM05D008508 ORTHO05D003325 2.4e-31 139.8 211 53.1
BcaB06g28998 Brassica carinata HOM05D008508 ORTHO05D003325 3.1e-31 139.4 165 53.3
C04p65950 Brassica napus HOM05D008508 ORTHO05D003325 6.9e-31 138.3 211 53.1
BraA05t19816Z Brassica rapa HOM05D008508 ORTHO05D003325 3.4e-30 136.0 211 56.9
BcaB02g09283 Brassica carinata HOM05D008508 ORTHO05D003325 4.5e-30 135.6 221 52.0
BraA04t18340Z Brassica rapa HOM05D008508 ORTHO05D003325 1.3e-29 134.0 211 56.4
A05p08470 Brassica napus HOM05D008508 ORTHO05D003325 1.4e-28 130.6 211 55.9
A04p28630 Brassica napus HOM05D008508 ORTHO05D003325 1.8e-26 123.6 211 53.6
THA.LOC104806576 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 3.2e-20 102.8 144 52.1
CARHR132120 Cardamine hirsuta HOM05D008508 ORTHO05D003325 1.6e-19 100.5 113 54.9
BcaB01g00255 Brassica carinata HOM05D008508 ORTHO05D003325 2.0e-17 93.6 90 80.0
THA.LOC104824529 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 5.9e-14 82.0 114 48.2
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 8.0e-11 71.6 101 47.5
AL5G37360 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 8.8e-10 68.2 42 81.0
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 3.4e-09 66.2 63 54.0
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 4.4e-09 65.9 70 55.7
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 4.4e-09 65.9 130 35.4
Phvul.007G158100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 5.7e-09 65.5 100 45.0
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 7.5e-09 65.1 63 54.0
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 7.5e-09 65.1 63 54.0
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 1.3e-08 64.3 63 55.6
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 1.3e-08 64.3 63 54.0
CARHR132130 Cardamine hirsuta HOM05D008508 ORTHO05D003325 2.8e-08 63.2 97 49.5
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 2.8e-08 63.2 101 43.6
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 6.3e-08 62.0 60 53.3
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 6.3e-08 62.0 91 45.1
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 1.1e-07 61.2 93 43.0
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 3.1e-07 59.7 71 52.1
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 3.1e-07 59.7 161 31.7
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 4.1e-07 59.3 144 41.0
Rhsim05G0188200 Rhododendron simsii HOM05D004206 ORTHO05D003325 5.4e-07 58.9 59 50.8
Nitab4.5_0009149g0020 Nicotiana tabacum HOM05D004206 ORTHO05D003325 7.0e-07 58.5 101 43.6
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 7.0e-07 58.5 158 35.4
CSS0043919 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 9.1e-07 58.2 77 49.4
CiPaw.09G188800 Carya illinoinensis HOM05D004206 ORTHO05D003325 9.1e-07 58.2 134 35.8
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 9.1e-07 58.2 94 42.6
Lalb_Chr21g0314341 Lupinus albus HOM05D004206 ORTHO05D003325 9.1e-07 58.2 149 36.9
MSTRG.19101 Avicennia marina HOM05D004206 ORTHO05D003325 1.6e-06 57.4 83 44.6
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 1.6e-06 57.4 112 37.5
COL.COLO4_14855 Corchorus olitorius HOM05D004206 ORTHO05D003325 1.6e-06 57.4 85 42.4
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 1.6e-06 57.4 143 36.4
Medtr1g068825 Medicago truncatula HOM05D004206 ORTHO05D003325 1.6e-06 57.4 150 34.7
Nitab4.5_0002077g0110 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.6e-06 57.4 66 48.5
Hma1.2p1_1707F.1_g298550 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 2.0e-06 57.0 62 50.0
Lalb_Chr25g0289551 Lupinus albus HOM05D004206 ORTHO05D003325 2.0e-06 57.0 119 36.1
Sc01g0003990 Simmondsia chinensis HOM05D004206 ORTHO05D003325 2.0e-06 57.0 73 45.2
Cpa.g.sc11.170 Carica papaya HOM05D004206 ORTHO05D003325 2.7e-06 56.6 51 56.9
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 2.7e-06 56.6 152 39.5
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 2.7e-06 56.6 166 34.3
PGR004G0289 Punica granatum HOM05D004206 ORTHO05D003325 2.7e-06 56.6 59 49.2
Sc20g0004600 Simmondsia chinensis HOM05D004206 ORTHO05D003325 2.7e-06 56.6 59 50.8
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 3.5e-06 56.2 152 34.9
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 4.5e-06 55.8 140 37.1
Lalb_Chr20g0113171 Lupinus albus HOM05D004206 ORTHO05D003325 5.9e-06 55.5 160 31.9
Nitab4.5_0000349g0070 Nicotiana tabacum HOM05D004206 ORTHO05D003325 5.9e-06 55.5 59 50.8
Sed0018769 Sechium edule HOM05D004206 ORTHO05D003325 5.9e-06 55.5 84 41.7
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 5.9e-06 55.5 118 40.7
TAR371G1160 Trochodendron aralioides HOM05D004206 ORTHO05D003325 5.9e-06 55.5 59 54.2
TAR636G0761 Trochodendron aralioides HOM05D004206 ORTHO05D003325 5.9e-06 55.5 55 56.4
Cc06_g02970 Coffea canephora HOM05D004206 ORTHO05D003325 7.7e-06 55.1 63 47.6
Psat6g067720 Pisum sativum HOM05D004206 ORTHO05D003325 7.7e-06 55.1 125 39.2
TPR.G25989 Trifolium pratense HOM05D004206 ORTHO05D003325 7.7e-06 55.1 59 49.2


User provided reference genes

Program Settings