Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 5.1e-176 620.9 305 100.0
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 7.0e-141 504.2 307 83.7
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 9.1e-141 503.8 307 83.4
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 3.5e-140 501.9 307 83.7
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 5.9e-140 501.1 307 83.7
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 5.9e-140 501.1 307 83.7
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 3.8e-139 498.4 307 82.1
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 4.9e-110 401.7 313 70.9
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 3.2e-109 399.1 313 71.6
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 7.8e-108 394.4 311 70.7
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 1.5e-106 390.2 316 69.0
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 1.4e-101 373.6 313 66.1
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 1.7e-99 366.7 309 65.0
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 8.3e-94 347.8 320 61.2
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 2.6e-87 326.2 308 59.7
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 1.9e-85 320.1 316 59.8
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 5.1e-83 312.0 255 67.1
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 4.2e-77 292.4 310 55.2
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 1.1e-74 284.3 283 59.7
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 8.1e-73 278.1 288 57.6
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.1e-72 277.7 288 57.6
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 1.1e-72 277.7 314 54.5
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 1.1e-72 277.7 305 53.1
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 3.1e-72 276.2 288 57.3
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 5.3e-72 275.4 305 53.1
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 9.0e-72 274.6 305 52.8
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.2e-71 274.2 313 55.6
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 4.5e-71 272.3 308 54.2
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.8e-71 271.9 311 55.3
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 9.9e-71 271.2 322 53.1
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 1.7e-70 270.4 318 53.1
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 2.2e-70 270.0 317 53.0
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 6.4e-70 268.5 313 54.3
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.4e-70 268.5 312 53.8
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 1.4e-69 267.3 316 52.8
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 1.6e-68 263.8 318 52.2
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 2.7e-68 263.1 314 54.8
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 3.5e-68 262.7 329 52.0
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 6.0e-68 261.9 329 52.0
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 6.0e-68 261.9 315 52.7
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 1.3e-67 260.8 317 51.4
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 1.8e-67 260.4 315 50.8
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 1.8e-67 260.4 316 50.3
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 3.0e-67 259.6 329 51.4
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 5.1e-67 258.8 345 49.3
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 1.1e-66 257.7 316 48.4
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 1.1e-66 257.7 313 52.4
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 1.5e-66 257.3 345 49.0
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 2.5e-66 256.5 314 51.9
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 3.3e-66 256.1 315 50.5
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 7.4e-66 255.0 315 50.8
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 1.6e-65 253.8 318 51.9
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 3.7e-65 252.7 329 49.5
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 3.7e-65 252.7 324 50.9
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 6.2e-65 251.9 320 49.4
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.8e-64 250.4 313 48.6
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 1.8e-64 250.4 312 52.9
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 3.1e-64 249.6 317 49.5
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 3.1e-64 249.6 320 51.2
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 4.0e-64 249.2 316 52.8
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 6.9e-64 248.4 318 50.0
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 9.0e-64 248.1 303 52.1
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 9.0e-64 248.1 315 52.1
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 2.0e-63 246.9 312 50.6
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 2.6e-63 246.5 321 50.2
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 7.6e-63 245.0 314 49.7
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 7.6e-63 245.0 330 50.6
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 9.9e-63 244.6 315 47.6
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 1.3e-62 244.2 319 48.6
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 1.7e-62 243.8 311 48.9
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 1.7e-62 243.8 312 48.4
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 1.7e-62 243.8 319 48.6
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 3.8e-62 242.7 317 50.8
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 4.9e-62 242.3 321 49.2
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 6.4e-62 241.9 326 50.3
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 1.1e-61 241.1 315 50.8
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 1.1e-61 241.1 301 47.2
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 1.4e-61 240.7 316 49.4
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 2.4e-61 240.0 315 48.9
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 4.2e-61 239.2 318 47.8
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 4.2e-61 239.2 318 48.7
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 1.2e-60 237.7 314 48.7
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 1.2e-60 237.7 324 48.1
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 1.6e-60 237.3 315 48.6
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 6.0e-60 235.3 314 48.4
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 1.0e-59 234.6 323 49.2
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 1.8e-59 233.8 311 48.2
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 3.9e-59 232.6 319 47.3
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 3.9e-59 232.6 318 48.1
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 5.1e-59 232.3 311 48.2
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.5e-58 230.7 318 49.4
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 1.9e-58 230.3 313 47.9
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 3.1e-56 223.0 257 52.9
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 3.1e-56 223.0 301 50.2
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 6.9e-56 221.9 316 47.5
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 1.3e-54 217.6 313 48.6
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 2.2e-54 216.9 315 46.7
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 3.2e-53 213.0 320 44.1
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 1.0e-51 208.0 299 47.5
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 5.1e-51 205.7 236 52.1
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 8.7e-51 204.9 316 45.9
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 1.9e-50 203.8 305 46.2
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.3e-50 203.0 345 43.8
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.1e-49 200.3 180 63.3
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 2.1e-49 200.3 253 53.0
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 2.8e-49 199.9 178 61.8
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 4.8e-49 199.1 345 43.8
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 4.1e-48 196.1 346 43.9
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 5.3e-48 195.7 180 62.2
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.3e-48 195.7 350 42.6
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 5.9e-47 192.2 313 41.2
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.0e-46 191.4 313 40.9
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.1e-45 188.0 171 62.6
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 6.1e-44 182.2 306 42.8
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 1.0e-43 181.4 308 44.2
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 2.3e-43 180.3 398 35.4
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 3.3e-42 176.4 307 42.3
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 7.4e-42 175.3 314 40.8
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 8.2e-41 171.8 289 42.6
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 4.5e-39 166.0 309 38.8
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 7.7e-39 165.2 310 38.4
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 3.2e-37 159.8 307 38.1
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.6e-36 156.4 145 57.2
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 4.6e-36 156.0 315 40.0
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 3.3e-34 149.8 207 46.4
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 2.0e-31 140.6 363 35.5
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 3.8e-30 136.3 181 48.1
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 3.2e-29 133.3 292 39.7
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 4.2e-29 132.9 117 59.0
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 4.2e-29 132.9 282 39.4
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 5.5e-29 132.5 101 68.3
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 4.7e-28 129.4 117 58.1
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.1e-26 124.8 192 42.2
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 4.4e-26 122.9 204 41.7
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 3.7e-25 119.8 171 42.1
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 5.3e-24 115.9 116 52.6
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 5.3e-24 115.9 75 73.3
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 1.6e-23 114.4 145 46.2
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 4.5e-23 112.8 176 40.9
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 7.7e-23 112.1 176 40.9
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 1.5e-21 107.8 137 55.5
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 4.2e-21 106.3 104 53.8
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 1.0e-19 101.7 182 36.8
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 2.6e-18 97.1 160 38.8
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 4.1e-16 89.7 164 39.6
C05p20210 Brassica napus HOM05D004212 ORTHO05D032610 2.0e-15 87.4 65 66.2
BolC5t30714H Brassica oleracea HOM05D004212 ORTHO05D032610 2.0e-15 87.4 65 66.2
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 4.5e-15 86.3 109 53.2
BcaC05g26039 Brassica carinata HOM05D004212 ORTHO05D032610 7.7e-15 85.5 75 61.3
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 1.5e-13 81.3 181 39.8
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.9e-13 80.9 238 31.1
BolC4t25439H Brassica oleracea HOM05D038158 ORTHO05D042869 4.2e-13 79.7 63 69.8
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 7.2e-13 79.0 114 50.9
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 1.8e-11 74.3 56 69.6
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 1.3e-09 68.2 56 58.9
C04p38620 Brassica napus HOM05D038158 ORTHO05D042869 2.2e-09 67.4 74 58.1
Cre07.g331000 Chlamydomonas reinhardtii HOM05D004212 ORTHO05D005128 3.5e-07 60.1 383 25.1
CARHR164030 Cardamine hirsuta HOM05D004212 ORTHO05D005128 4.5e-07 59.7 60 56.7
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 1.0e-06 58.5 55 52.7
AL5G35160 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 3.8e-06 56.6 45 57.8


User provided reference genes

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