Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.5e-190 668.7 354 100.0
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 2.3e-119 433.0 445 60.0
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 4.8e-117 425.2 454 59.3
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 3.5e-104 382.5 414 58.7
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 2.5e-102 376.3 425 57.4
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 7.2e-97 358.2 425 55.3
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 6.1e-96 355.1 430 54.7
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.4e-89 334.0 450 48.7
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 6.3e-85 318.5 444 47.7
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 3.8e-82 309.3 409 51.6
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 7.4e-78 295.0 431 45.2
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 1.2e-72 277.7 453 42.2
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.6e-72 277.3 448 44.2
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 4.7e-72 275.8 448 42.9
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.0e-70 270.4 452 41.8
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 8.0e-64 248.4 446 40.4
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 9.1e-60 235.0 403 40.7
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 5.9e-59 232.3 450 40.0
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 7.7e-59 231.9 367 43.3
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 3.8e-58 229.6 392 42.9
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 1.9e-57 227.3 373 42.1
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 3.6e-56 223.0 377 42.4
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 3.6e-56 223.0 377 42.7
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 4.7e-56 222.6 456 38.2
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 3.4e-54 216.5 458 37.3
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 9.2e-52 208.4 445 37.3
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 1.3e-50 204.5 391 39.9
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 1.9e-49 200.7 442 36.9
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 5.8e-46 189.1 467 32.5
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 2.2e-45 187.2 464 33.8
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 1.4e-44 184.5 478 33.7
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 2.4e-44 183.7 473 34.2
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.4e-44 183.7 475 34.7
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 7.0e-44 182.2 462 34.4
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 1.2e-43 181.4 475 32.6
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 1.3e-42 177.9 467 32.1
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 1.7e-42 177.6 477 34.0
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 3.3e-41 173.3 469 32.8
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 4.3e-41 172.9 481 31.8
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 4.3e-41 172.9 474 32.9
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 7.3e-41 172.2 482 32.8
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 7.3e-41 172.2 475 34.1
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.6e-40 171.0 481 32.2
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.1e-40 170.6 481 32.0
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.8e-40 170.2 469 32.0
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.8e-40 170.2 481 32.2
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 8.0e-40 168.7 442 34.2
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.1e-39 168.3 447 34.0
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 1.4e-39 167.9 464 33.0
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.2e-38 164.9 445 35.3
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 1.5e-38 164.5 476 30.7
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 3.4e-38 163.3 476 30.5
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 1.7e-37 161.0 480 31.7
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.7e-37 161.0 467 32.5
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 3.7e-37 159.8 417 34.1
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 1.1e-36 158.3 452 32.3
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.4e-36 157.9 465 32.7
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 2.4e-36 157.1 453 32.9
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.2e-35 154.8 381 34.9
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 2.7e-35 153.7 471 30.8
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 3.5e-35 153.3 450 30.2
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 3.5e-35 153.3 451 31.7
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 4.6e-35 152.9 389 33.7
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.3e-34 151.4 468 29.5
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.0e-34 150.2 446 31.2
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 3.0e-34 150.2 474 31.0
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 6.6e-34 149.1 457 30.6
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 6.6e-34 149.1 458 31.2
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 1.5e-33 147.9 460 32.4
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.9e-33 147.5 449 30.7
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 3.3e-33 146.7 360 33.3
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 4.3e-33 146.4 468 30.3
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 5.6e-33 146.0 467 31.7
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 7.3e-33 145.6 475 30.9
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 1.6e-32 144.4 367 35.1
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.6e-32 144.4 410 33.7
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 2.1e-32 144.1 475 30.3
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 6.2e-32 142.5 473 29.6
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 6.2e-32 142.5 442 31.7
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.1e-31 141.7 445 31.7
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.4e-31 141.4 455 31.2
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 4.0e-31 139.8 474 30.6
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 6.8e-31 139.0 459 30.1
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 8.9e-31 138.7 477 30.6
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 1.2e-30 138.3 485 30.3
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.4e-30 136.7 444 30.4
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 4.4e-30 136.3 461 29.9
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 7.5e-30 135.6 464 31.7
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.7e-29 134.4 472 28.0
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.2e-29 134.0 460 30.2
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 3.7e-29 133.3 469 28.1
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 4.9e-29 132.9 473 29.0
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 8.3e-29 132.1 419 31.3
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 1.1e-28 131.7 475 30.3
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.9e-28 131.0 458 29.3
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 2.4e-28 130.6 415 30.1
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 7.1e-28 129.0 470 28.9
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 1.2e-27 128.3 485 27.2
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 3.5e-27 126.7 442 29.6
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 4.6e-27 126.3 485 28.5
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 6.0e-27 125.9 460 29.3
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.7e-26 124.4 493 28.6
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 1.7e-26 124.4 477 27.0
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 3.9e-26 123.2 468 28.2
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 4.3e-25 119.8 463 29.6
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 9.5e-25 118.6 112 57.1
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.2e-24 118.2 449 28.3
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 1.2e-24 118.2 449 30.1
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 1.2e-24 118.2 467 26.3
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 2.1e-24 117.5 439 29.8
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 6.2e-24 115.9 490 27.8
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 6.2e-24 115.9 158 43.0
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 8.1e-24 115.5 468 27.1
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.1e-23 115.2 449 29.0
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 2.4e-23 114.0 414 28.3
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 3.1e-23 113.6 263 35.0
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 3.1e-23 113.6 491 27.7
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 4.0e-23 113.2 466 26.6
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 4.0e-23 113.2 481 28.3
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 6.8e-23 112.5 380 30.0
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 1.5e-22 111.3 445 27.9
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 2.6e-22 110.5 472 27.8
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 2.6e-22 110.5 453 27.8
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 4.4e-22 109.8 371 28.0
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 9.9e-22 108.6 453 27.8
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.3e-21 108.2 168 43.5
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.1e-20 105.1 101 56.4
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 1.4e-20 104.8 170 40.0
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 4.2e-20 103.2 170 39.4
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.4e-20 102.8 144 41.7
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 1.2e-19 101.7 400 27.8
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.6e-19 101.3 425 27.8
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 1.6e-19 101.3 170 38.8
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 3.5e-19 100.1 114 46.5
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 6.0e-19 99.4 452 27.7
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 6.0e-19 99.4 170 38.2
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 1.3e-18 98.2 193 39.4
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 1.7e-18 97.8 167 41.9
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 2.3e-18 97.4 58 82.8
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 8.7e-18 95.5 436 26.8
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 3.3e-17 93.6 142 40.8
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 3.3e-17 93.6 146 43.2
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 5.6e-17 92.8 98 48.0
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.7e-16 89.7 166 39.2
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.1e-15 88.6 218 33.5
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 5.3e-15 86.3 153 38.6
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 9.0e-15 85.5 177 33.3
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 1.5e-14 84.7 100 46.0
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 1.7e-13 81.3 121 42.1
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.2e-13 80.9 101 43.6
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.1e-12 78.6 324 28.1
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.4e-12 78.2 98 48.0
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 1.4e-12 78.2 92 48.9
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 5.4e-12 76.3 381 26.8
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 5.4e-12 76.3 464 26.1
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 9.3e-12 75.5 188 35.6
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.2e-11 75.1 90 44.4
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 2.1e-11 74.3 90 40.0
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.7e-11 73.9 154 35.1
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 1.0e-10 72.0 271 29.5
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 3.9e-10 70.1 238 32.4
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 6.6e-10 69.3 133 40.6
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 8.7e-10 68.9 169 36.1
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 7.3e-09 65.9 130 40.8
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 7.3e-09 65.9 59 54.2
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 9.6e-09 65.5 101 38.6
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 4.8e-08 63.2 268 26.9
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 5.3e-07 59.7 95 37.9
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 1.2e-06 58.5 46 56.5
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 2.0e-06 57.8 165 32.1
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.6e-06 57.4 143 35.0


User provided reference genes

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