Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 2.1e-204 715.7 418 100.0
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 1.6e-180 636.3 418 90.2
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 4.0e-179 631.7 431 84.0
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 8.8e-179 630.6 419 86.2
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 2.6e-178 629.0 418 89.0
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 7.0e-176 620.9 408 87.5
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 1.6e-175 619.8 417 85.9
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 2.0e-175 619.4 422 85.3
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 2.9e-174 615.5 421 80.0
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 3.8e-174 615.1 417 84.9
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 8.5e-174 614.0 423 84.4
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 1.9e-173 612.8 416 84.4
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 6.1e-172 607.8 420 83.1
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 6.1e-172 607.8 420 83.1
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 5.9e-167 591.3 409 76.3
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 8.6e-150 534.3 419 72.6
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 4.3e-149 531.9 414 68.8
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 2.2e-145 519.6 412 67.0
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 2.1e-140 503.1 302 86.4
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 2.1e-140 503.1 302 86.4
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 3.5e-135 485.7 414 60.9
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 2.5e-133 479.6 417 60.9
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 2.5e-133 479.6 417 60.9
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 3.3e-133 479.2 411 61.1
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 5.6e-133 478.4 412 61.9
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 2.8e-132 476.1 410 61.2
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 3.6e-132 475.7 412 66.7
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 1.2e-130 470.7 453 56.7
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 3.4e-130 469.2 408 60.3
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 4.4e-130 468.8 419 58.9
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 5.8e-130 468.4 411 59.4
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 7.6e-130 468.0 415 65.3
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 1.3e-129 467.2 416 58.9
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 2.9e-129 466.1 408 59.8
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 2.9e-129 466.1 326 69.6
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 3.8e-129 465.7 412 60.7
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 3.8e-129 465.7 414 61.1
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 4.9e-129 465.3 416 59.9
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 4.9e-129 465.3 312 72.1
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 8.4e-129 464.5 327 70.3
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 1.9e-128 463.4 417 64.5
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 1.9e-128 463.4 408 59.8
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 2.4e-128 463.0 323 70.6
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 2.4e-128 463.0 416 59.9
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 3.2e-128 462.6 392 63.8
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 4.2e-128 462.2 416 68.3
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 1.6e-127 460.3 415 59.8
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 2.7e-127 459.5 414 60.4
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 3.5e-127 459.1 324 69.4
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 3.0e-126 456.1 329 70.8
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 6.6e-126 454.9 410 59.5
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 6.6e-126 454.9 414 59.2
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 6.6e-126 454.9 396 60.9
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 1.5e-125 453.8 410 60.5
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 2.5e-125 453.0 321 69.8
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 3.3e-125 452.6 428 57.0
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 4.3e-125 452.2 413 58.6
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 7.3e-125 451.4 406 59.1
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 7.3e-125 451.4 323 68.1
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 1.3e-124 450.7 324 69.8
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 2.8e-124 449.5 413 58.1
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 3.6e-124 449.1 406 57.9
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 3.6e-124 449.1 328 68.0
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 1.2e-122 444.1 413 58.1
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 2.9e-121 439.5 326 66.6
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 3.8e-121 439.1 365 63.8
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 6.4e-121 438.3 410 57.1
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 1.1e-120 437.6 422 55.5
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 5.4e-120 435.3 376 62.2
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 2.1e-119 433.3 305 71.8
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 3.5e-119 432.6 410 57.6
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 4.6e-119 432.2 305 71.5
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 4.6e-119 432.2 328 65.9
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 7.9e-119 431.4 316 69.6
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 2.3e-118 429.9 407 60.9
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 8.7e-118 427.9 422 57.1
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 2.5e-117 426.4 313 66.1
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 5.6e-117 425.2 301 73.1
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 1.6e-116 423.7 373 61.9
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 2.8e-116 422.9 392 56.4
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 2.8e-116 422.9 312 66.0
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 3.7e-116 422.5 301 73.1
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 8.1e-116 421.4 338 62.7
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 6.9e-115 418.3 373 58.4
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.4e-114 416.0 392 55.6
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 4.5e-114 415.6 404 55.7
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 7.6e-114 414.8 401 55.6
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 1.3e-113 414.1 319 65.5
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 2.2e-113 413.3 326 62.9
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 4.2e-112 409.1 415 63.1
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 3.5e-111 406.0 318 63.8
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 7.9e-111 404.8 392 55.4
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 2.3e-110 403.3 426 52.1
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 6.7e-110 401.7 333 62.2
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 4.3e-109 399.1 280 71.8
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 2.0e-106 390.2 286 68.9
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 2.9e-105 386.3 321 63.2
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 3.8e-105 386.0 327 62.4
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 4.6e-103 379.0 406 50.2
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 6.0e-103 378.6 313 62.9
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 7.6e-98 361.7 301 62.1
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.0e-97 361.3 301 61.8
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.0e-97 361.3 301 61.8
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 1.3e-97 360.9 406 48.0
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.7e-97 360.5 301 61.8
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 1.7e-97 360.5 315 57.5
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 5.0e-97 359.0 335 56.4
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.2e-96 356.3 301 61.1
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 7.9e-95 351.7 318 57.2
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 5.1e-94 349.0 338 53.3
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.3e-89 334.3 270 62.2
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 5.0e-81 305.8 310 49.7
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 4.5e-74 282.7 263 57.8
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.1e-71 273.9 284 54.2
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 1.4e-67 261.2 180 70.0
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 5.9e-66 255.8 285 49.5
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.5e-61 241.1 263 50.6
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 5.5e-56 222.6 256 49.6
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 4.7e-55 219.5 392 35.7
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 8.0e-55 218.8 158 71.5
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 4.1e-51 206.5 150 66.7
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 5.2e-46 189.5 148 66.9
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.3e-44 184.9 129 71.3
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 9.2e-43 178.7 132 64.4
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 8.0e-39 165.6 115 68.7
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 3.1e-38 163.7 146 58.9
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 1.1e-24 118.6 80 73.8
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 9.2e-19 99.0 73 64.4
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.1e-16 92.0 147 39.5
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 2.2e-12 77.8 66 62.1
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 9.3e-11 72.4 417 20.6
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 1.3e-09 68.6 56 69.6
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 1.8e-06 58.2 69 50.7
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 3.1e-06 57.4 50 58.0


User provided reference genes

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