Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 1.3e-103 379.8 194 100.0
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 2.4e-86 322.4 195 85.1
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 3.1e-86 322.0 194 85.6
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 7.7e-85 317.4 195 85.1
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 7.7e-85 317.4 195 85.1
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 6.5e-84 314.3 198 83.8
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 1.4e-83 313.2 197 81.7
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 2.5e-83 312.4 198 82.8
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 3.2e-83 312.0 195 83.6
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 3.2e-83 312.0 198 82.8
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 2.7e-82 308.9 196 81.1
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 3.6e-82 308.5 198 81.3
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 3.9e-81 305.1 195 83.1
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 1.3e-76 290.0 191 77.5
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 3.6e-74 282.0 197 75.6
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 1.3e-71 273.5 197 73.6
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 3.7e-71 271.9 197 73.1
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 2.4e-54 216.1 164 67.7
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 8.3e-47 191.0 211 49.8
BolC6t37424H Brassica oleracea HOM05D005893 ORTHO05D007295 7.0e-46 188.0 132 76.5
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 5.2e-41 171.8 190 51.6
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 1.3e-39 167.2 115 68.7
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 2.2e-39 166.4 193 48.7
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 2.9e-39 166.0 123 64.2
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 2.4e-38 162.9 185 53.0
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 3.2e-38 162.5 116 69.0
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 5.4e-38 161.8 203 52.2
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 5.4e-38 161.8 195 51.3
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 1.2e-37 160.6 190 50.5
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 1.6e-37 160.2 145 56.6
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 2.7e-37 159.5 145 57.2
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 2.7e-37 159.5 195 49.2
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 3.5e-37 159.1 99 76.8
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 3.5e-37 159.1 189 48.7
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 4.6e-37 158.7 99 76.8
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 4.6e-37 158.7 98 74.5
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 6.0e-37 158.3 184 48.9
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 6.0e-37 158.3 170 54.7
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 7.8e-37 157.9 125 63.2
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 1.0e-36 157.5 189 51.3
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 1.0e-36 157.5 196 46.4
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 1.0e-36 157.5 105 68.6
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 1.3e-36 157.1 194 47.4
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 1.7e-36 156.8 191 51.3
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 1.7e-36 156.8 131 59.5
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 2.3e-36 156.4 193 49.7
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 3.0e-36 156.0 186 50.0
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 3.0e-36 156.0 100 74.0
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 3.0e-36 156.0 192 47.9
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 3.9e-36 155.6 188 48.9
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 3.9e-36 155.6 198 49.0
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 3.9e-36 155.6 196 48.0
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 3.9e-36 155.6 198 50.0
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 5.0e-36 155.2 163 50.9
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 5.0e-36 155.2 118 63.6
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 5.0e-36 155.2 194 49.0
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 6.6e-36 154.8 125 60.0
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 8.6e-36 154.5 150 57.3
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 8.6e-36 154.5 118 61.9
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 8.6e-36 154.5 122 64.8
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 1.1e-35 154.1 187 49.2
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 1.1e-35 154.1 145 55.9
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 1.5e-35 153.7 161 55.9
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 1.5e-35 153.7 193 50.3
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 1.9e-35 153.3 188 48.4
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 1.9e-35 153.3 184 50.5
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 1.9e-35 153.3 194 49.0
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 2.5e-35 152.9 195 47.7
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 3.3e-35 152.5 193 50.8
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 4.3e-35 152.1 121 60.3
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 4.3e-35 152.1 143 56.6
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 5.6e-35 151.8 115 62.6
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 5.6e-35 151.8 191 48.2
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 7.3e-35 151.4 114 66.7
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 7.3e-35 151.4 122 61.5
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 7.3e-35 151.4 120 59.2
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 7.3e-35 151.4 161 48.4
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 9.5e-35 151.0 194 45.9
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 9.5e-35 151.0 126 60.3
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 1.2e-34 150.6 94 72.3
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 1.6e-34 150.2 148 53.4
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 2.1e-34 149.8 126 61.1
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 3.6e-34 149.1 118 59.3
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 3.6e-34 149.1 124 60.5
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 3.6e-34 149.1 114 60.5
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 6.2e-34 148.3 185 49.2
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 6.2e-34 148.3 199 44.7
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 8.1e-34 147.9 93 74.2
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 1.4e-33 147.1 194 46.9
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 1.8e-33 146.7 149 48.3
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 2.3e-33 146.4 198 47.5
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 3.1e-33 146.0 93 73.1
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 5.2e-33 145.2 178 47.2
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 5.2e-33 145.2 178 47.2
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 5.2e-33 145.2 178 47.2
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 6.8e-33 144.8 94 71.3
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 1.5e-32 143.7 99 67.7
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 2.0e-32 143.3 82 80.5
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 7.5e-32 141.4 194 44.3
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 9.8e-32 141.0 96 64.6
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 9.8e-32 141.0 96 64.6
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 9.8e-32 141.0 96 64.6
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 1.3e-31 140.6 204 44.6
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.7e-31 140.2 96 65.6
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.2e-31 139.8 96 64.6
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 2.9e-31 139.4 185 44.9
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 3.7e-31 139.0 96 67.7
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 6.4e-31 138.3 96 63.5
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 2.4e-30 136.3 186 44.6
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 2.4e-30 136.3 130 54.6
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 5.4e-30 135.2 175 46.9
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 1.0e-28 131.0 98 62.2
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 2.3e-28 129.8 175 45.1
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 3.0e-28 129.4 96 63.5
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 5.1e-28 128.6 93 61.3
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 4.7e-26 122.1 80 68.8
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 8.9e-25 117.9 132 44.7
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 8.9e-25 117.9 120 50.0
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.1e-22 110.9 78 64.1
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 3.5e-21 105.9 174 37.4
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 4.6e-21 105.5 98 54.1
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 4.3e-19 99.0 96 54.2
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 4.3e-19 99.0 70 62.9
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 6.2e-18 95.1 90 55.6
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 6.9e-17 91.7 107 42.1
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 4.2e-14 82.4 49 71.4
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 5.4e-14 82.0 79 46.8
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 1.3e-12 77.4 90 46.7
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 6.6e-12 75.1 91 50.5
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 2.5e-11 73.2 77 46.8
Cfa025074 Carpinus fangiana HOM05D005893 ORTHO05D007295 1.1e-09 67.8 73 41.1
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 1.1e-09 67.8 78 39.7
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 1.5e-08 63.9 95 40.0
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 5.8e-08 62.0 122 34.4
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 2.2e-07 60.1 53 50.9
MBI05_g31458_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 3.8e-07 59.3 69 49.3
vmacro10504 Vaccinium macrocarpon HOM05D002826 ORTHO05D003105 6.4e-07 58.5 94 36.2
Migut.E00281 Erythranthe guttata HOM05D002826 ORTHO05D003105 2.4e-06 56.6 69 34.8
SGA_v2.0_scaffold59G20634 Striga asiatica HOM05D002826 ORTHO05D003105 2.4e-06 56.6 54 38.9
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 4.2e-06 55.8 80 40.0
ClCG05G023210 Citrullus lanatus HOM05D002826 ORTHO05D003105 5.4e-06 55.5 50 40.0
HanXRQChr16g0527021 Helianthus annuus HOM05D002826 ORTHO05D003105 5.4e-06 55.5 47 44.7
MD13G1049900 Malus domestica HOM05D002826 ORTHO05D003105 5.4e-06 55.5 61 36.1
Potri.010G132400 Populus trichocarpa HOM05D002826 ORTHO05D003105 5.4e-06 55.5 50 42.0
Sabra10G0101100 Salix brachista HOM05D002826 ORTHO05D003105 5.4e-06 55.5 50 42.0
DCAR_007216 Daucus carota HOM05D000508 ORTHO05D000371 9.3e-06 54.7 103 30.1
Hma1.2p1_0189F.1_g082640 Hydrangea macrophylla HOM05D002826 ORTHO05D003105 9.3e-06 54.7 97 32.0
MD16G1050900 Malus domestica HOM05D002826 ORTHO05D003105 9.3e-06 54.7 60 36.7


User provided reference genes

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