Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.4e-137 493.0 260 100.0
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.0e-116 423.7 261 83.9
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 5.1e-116 421.4 260 83.8
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 1.5e-115 419.9 264 84.1
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 7.3e-115 417.5 261 83.5
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 7.3e-115 417.5 261 84.3
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 1.2e-114 416.8 261 84.3
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 5.2e-113 411.4 261 82.4
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 3.4e-112 408.7 260 81.2
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 4.4e-112 408.3 260 81.2
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 2.9e-111 405.6 260 80.4
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 6.4e-111 404.4 260 83.1
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 2.4e-110 402.5 261 80.5
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 2.4e-110 402.5 261 80.5
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 6.0e-109 397.9 279 75.6
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 5.1e-108 394.8 261 80.1
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 6.6e-108 394.4 260 80.4
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 8.9e-105 384.0 261 77.4
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 2.2e-103 379.4 263 81.4
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 9.3e-102 374.0 258 76.4
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 1.6e-101 373.2 261 73.9
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 7.8e-101 370.9 237 86.1
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.3e-100 370.2 261 76.2
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 1.1e-99 367.1 264 73.1
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 1.1e-99 367.1 261 72.8
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 3.3e-99 365.5 262 72.9
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 4.3e-99 365.2 261 72.4
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 4.3e-99 365.2 263 73.8
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 7.3e-99 364.4 262 72.5
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 1.3e-98 363.6 263 72.6
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.3e-98 363.6 249 77.1
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 4.8e-98 361.7 262 73.3
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 6.2e-98 361.3 263 73.4
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 6.2e-98 361.3 262 74.8
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 6.2e-98 361.3 259 72.6
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 8.1e-98 360.9 263 72.6
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 8.1e-98 360.9 262 71.8
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 8.1e-98 360.9 260 73.1
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.4e-97 360.1 256 74.2
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.8e-97 359.8 263 72.2
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 3.1e-97 359.0 263 71.9
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 4.0e-97 358.6 263 71.5
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 9.0e-97 357.5 263 71.9
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.2e-96 357.1 263 70.7
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 1.5e-96 356.7 260 71.5
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 3.4e-96 355.5 262 71.8
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 4.5e-96 355.1 263 69.6
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.5e-96 355.1 263 70.3
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 4.5e-96 355.1 262 70.6
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 4.5e-96 355.1 263 71.5
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 5.8e-96 354.8 262 72.1
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 9.9e-96 354.0 262 72.1
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 1.3e-95 353.6 261 72.0
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 2.2e-95 352.8 262 73.3
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.2e-95 352.8 261 71.6
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 2.9e-95 352.4 263 73.8
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 2.9e-95 352.4 261 70.1
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 2.9e-95 352.4 262 71.4
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 3.8e-95 352.1 261 69.7
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 3.8e-95 352.1 262 71.8
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 4.9e-95 351.7 260 71.2
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 4.9e-95 351.7 263 70.3
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 6.4e-95 351.3 262 71.4
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.4e-95 351.3 263 70.3
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.1e-94 350.5 262 69.8
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.4e-94 350.1 263 70.3
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.9e-94 349.7 261 69.7
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 2.4e-94 349.4 284 66.2
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 2.4e-94 349.4 262 73.3
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 2.4e-94 349.4 263 71.1
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 2.4e-94 349.4 261 71.3
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.2e-94 348.6 261 71.6
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 4.2e-94 348.6 261 71.6
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 7.1e-94 347.8 263 70.0
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 9.3e-94 347.4 261 69.0
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 9.3e-94 347.4 261 71.6
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.6e-93 346.7 248 72.6
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 1.6e-93 346.7 263 70.7
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.1e-93 346.3 263 69.2
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 6.0e-93 344.7 262 69.8
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 6.0e-93 344.7 251 72.9
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 6.0e-93 344.7 269 69.5
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.8e-92 343.2 261 70.5
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.8e-92 343.2 263 69.2
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.3e-92 342.8 261 70.9
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 3.0e-92 342.4 262 69.8
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 3.0e-92 342.4 261 69.7
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 3.0e-92 342.4 263 69.2
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 3.9e-92 342.0 261 69.7
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 3.9e-92 342.0 264 67.4
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 6.7e-92 341.3 262 71.8
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 8.7e-92 340.9 257 67.7
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 8.7e-92 340.9 261 68.6
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.5e-91 340.1 263 69.2
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 1.9e-91 339.7 261 68.6
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 1.9e-91 339.7 268 69.8
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.3e-91 339.0 263 68.8
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 3.3e-91 339.0 259 71.0
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 4.3e-91 338.6 263 68.4
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.3e-91 338.6 263 68.4
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 5.6e-91 338.2 250 70.8
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 5.6e-91 338.2 261 70.1
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 7.4e-91 337.8 263 69.6
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.3e-90 337.0 249 70.7
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 1.3e-90 337.0 262 67.9
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.6e-90 336.7 262 68.7
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 1.6e-90 336.7 263 68.8
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.1e-90 336.3 261 67.4
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 3.7e-90 335.5 263 67.3
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.2e-90 334.7 251 70.9
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 8.1e-90 334.3 269 68.4
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 1.1e-89 334.0 263 68.1
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 1.4e-89 333.6 263 67.3
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 1.4e-89 333.6 257 66.5
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 3.1e-89 332.4 261 68.2
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 5.3e-89 331.6 277 64.3
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 5.3e-89 331.6 305 62.0
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 5.3e-89 331.6 265 67.9
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 1.5e-88 330.1 260 66.9
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 4.5e-88 328.6 264 67.0
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 7.6e-88 327.8 259 67.6
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 1.3e-87 327.0 257 67.3
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 3.8e-87 325.5 249 68.3
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.1e-86 323.9 251 67.7
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 1.4e-86 323.6 255 68.2
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 1.9e-86 323.2 282 63.5
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.4e-86 322.8 263 66.2
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 9.3e-86 320.9 265 66.8
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 4.6e-85 318.5 256 66.8
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.9e-83 313.2 257 63.8
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.9e-83 313.2 257 63.8
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 5.6e-83 311.6 256 66.0
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 2.1e-82 309.7 262 64.9
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 2.4e-81 306.2 233 69.1
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 2.4e-81 306.2 262 62.6
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 3.1e-81 305.8 314 56.4
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 3.1e-81 305.8 256 64.5
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.5e-80 303.5 263 62.4
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 1.5e-80 303.5 256 64.8
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 5.8e-80 301.6 264 62.5
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.7e-79 300.1 226 71.7
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 2.5e-78 296.2 263 61.2
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 8.7e-76 287.7 270 61.9
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 1.9e-75 286.6 236 64.8
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 3.3e-75 285.8 253 61.7
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 4.8e-74 282.0 261 59.8
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 5.3e-73 278.5 220 68.6
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 1.2e-72 277.3 197 74.6
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 6.1e-69 265.0 178 76.4
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.3e-68 263.1 144 88.2
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 2.8e-66 256.1 162 79.0
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.6e-40 170.6 170 56.5
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 7.2e-38 161.8 232 44.4
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 1.2e-37 161.0 181 52.5
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 2.7e-37 159.8 178 51.7
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.9e-30 137.1 93 73.1
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.7e-29 132.5 74 90.5
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 6.8e-28 128.6 240 36.2
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 4.4e-27 125.9 158 46.2
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 2.8e-26 123.2 78 78.2
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 3.4e-19 99.8 159 39.6
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 7.5e-19 98.6 98 59.2
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 1.0e-15 88.2 117 41.9
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 2.8e-13 80.1 102 47.1
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 3.1e-12 76.6 40 82.5
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 4.0e-12 76.3 48 72.9
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.5e-11 74.3 42 78.6
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.4e-09 67.8 40 72.5
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 1.9e-09 67.4 42 69.0
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 7.0e-09 65.5 138 34.8
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 2.1e-08 63.9 86 37.2
BolC1t01166H Brassica oleracea HOM05D003984 ORTHO05D033849 3.5e-08 63.2 46 71.7
BraA09t38747Z Brassica rapa HOM05D003984 ORTHO05D033849 6.6e-07 58.9 66 59.1
BcaNung04651 Brassica carinata HOM05D034866 ORTHO05D039225 2.5e-06 57.0 111 42.3
A09p62400 Brassica napus HOM05D000348 ORTHO05D013806 3.3e-06 56.6 40 67.5
BraA05t21530Z Brassica rapa HOM05D003984 ORTHO05D033849 4.3e-06 56.2 51 62.7
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 5.6e-06 55.8 32 87.5
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 7.3e-06 55.5 35 71.4
C06p30290 Brassica napus HOM05D021762 ORTHO05D013806 9.5e-06 55.1 34 73.5


User provided reference genes

Program Settings