Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 1.7e-112 409.5 217 100.0
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 5.0e-109 397.9 217 96.8
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 2.7e-107 392.1 217 94.5
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 2.7e-107 392.1 217 94.5
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 6.1e-107 391.0 217 93.5
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 1.4e-106 389.8 217 93.5
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 5.2e-106 387.9 217 93.1
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 2.6e-105 385.6 217 93.1
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 7.5e-105 384.0 220 92.7
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 4.8e-104 381.3 217 93.1
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 8.3e-104 380.6 217 93.1
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 1.4e-103 379.8 220 91.8
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 1.6e-102 376.3 220 92.3
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 1.6e-102 376.3 220 92.3
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 1.6e-102 376.3 220 92.3
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 2.0e-102 375.9 217 90.3
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 8.0e-99 364.0 198 92.9
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 1.5e-92 343.2 211 86.3
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.5e-84 315.8 208 80.3
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 6.8e-82 307.8 209 83.7
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 6.8e-82 307.8 177 92.7
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 6.4e-80 301.2 181 92.3
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 4.6e-78 295.0 209 75.1
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.9e-76 289.7 202 75.2
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 4.3e-76 288.5 208 72.1
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 3.6e-75 285.4 229 68.6
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 8.1e-75 284.3 208 71.2
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 4.0e-74 282.0 231 67.1
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 6.8e-74 281.2 230 68.7
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 8.9e-74 280.8 222 67.6
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 2.0e-73 279.6 210 70.5
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 4.4e-73 278.5 206 68.4
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 4.4e-73 278.5 206 68.9
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 4.4e-73 278.5 206 68.9
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 1.7e-72 276.6 212 70.3
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 4.9e-72 275.0 206 69.9
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.9e-72 275.0 211 68.2
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.9e-72 275.0 211 68.2
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 8.3e-72 274.2 216 68.1
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 8.3e-72 274.2 216 68.1
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 1.1e-71 273.9 207 68.6
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.1e-71 273.9 211 67.8
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 1.1e-71 273.9 210 68.6
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 1.9e-71 273.1 211 67.8
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.9e-71 273.1 211 67.8
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 1.9e-71 273.1 212 67.5
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.4e-71 272.7 211 67.8
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.4e-71 272.7 211 67.8
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 2.4e-71 272.7 214 66.4
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 3.2e-71 272.3 209 68.9
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 4.1e-71 271.9 209 68.4
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 4.1e-71 271.9 207 68.6
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.4e-71 271.6 208 67.8
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 5.4e-71 271.6 208 67.8
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 5.4e-71 271.6 207 69.6
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 5.4e-71 271.6 210 67.6
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 7.1e-71 271.2 203 68.5
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 7.1e-71 271.2 214 66.4
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 7.1e-71 271.2 211 67.3
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.2e-70 270.4 207 67.6
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 1.6e-70 270.0 211 67.8
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.6e-70 270.0 208 67.3
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 2.1e-70 269.6 210 67.6
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 2.1e-70 269.6 212 67.0
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 2.7e-70 269.2 219 64.8
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 2.7e-70 269.2 207 67.6
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.7e-70 269.2 231 66.7
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 2.7e-70 269.2 207 67.1
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 3.5e-70 268.9 229 65.1
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 3.5e-70 268.9 202 69.3
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 3.5e-70 268.9 202 70.8
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 4.6e-70 268.5 208 67.8
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 4.6e-70 268.5 197 70.6
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 7.8e-70 267.7 211 66.8
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.0e-69 267.3 209 67.9
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 1.0e-69 267.3 215 63.7
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.3e-69 266.9 202 70.3
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.3e-69 266.2 209 67.9
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 3.0e-69 265.8 208 66.3
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 3.0e-69 265.8 225 62.2
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 3.9e-69 265.4 215 65.6
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 5.1e-69 265.0 198 70.7
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 6.6e-69 264.6 209 67.9
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 8.6e-69 264.2 239 62.3
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 8.6e-69 264.2 213 66.2
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.1e-68 263.8 209 65.1
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 1.9e-68 263.1 223 68.2
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 1.9e-68 263.1 198 70.2
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.9e-68 263.1 194 71.1
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.9e-68 263.1 230 63.9
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 2.5e-68 262.7 231 61.5
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 2.5e-68 262.7 213 65.7
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 2.5e-68 262.7 209 66.0
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.5e-68 262.7 235 64.7
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 5.6e-68 261.5 202 67.3
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 5.6e-68 261.5 207 64.7
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 7.3e-68 261.2 213 63.8
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 1.2e-67 260.4 201 67.7
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 3.6e-67 258.8 210 65.7
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 6.2e-67 258.1 202 67.8
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 6.2e-67 258.1 211 64.0
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 1.8e-66 256.5 207 65.2
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 3.1e-66 255.8 215 65.1
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 4.0e-66 255.4 226 65.0
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 4.0e-66 255.4 202 65.8
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 1.2e-65 253.8 195 67.2
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 4.4e-65 251.9 212 61.8
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 5.8e-65 251.5 196 66.8
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 4.9e-64 248.4 215 64.2
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 1.1e-63 247.3 215 63.7
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 3.2e-63 245.7 197 67.0
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.2e-62 243.8 194 63.9
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.6e-62 243.4 199 65.3
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.1e-62 243.0 225 58.2
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 3.5e-62 242.3 197 63.5
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 4.6e-62 241.9 210 60.5
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 6.0e-62 241.5 226 58.0
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 1.7e-61 240.0 209 61.7
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 3.0e-61 239.2 204 64.7
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 8.6e-61 237.7 192 62.0
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 1.1e-60 237.3 204 64.2
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 3.3e-60 235.7 194 61.9
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 3.6e-59 232.3 201 60.2
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 9.9e-57 224.2 193 62.2
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.9e-55 219.9 195 60.0
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 2.5e-52 209.5 148 70.9
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.3e-51 207.2 204 53.9
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 1.9e-47 193.4 171 58.5
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.6e-46 190.3 232 52.2
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 2.1e-46 189.9 216 53.7
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 2.0e-41 173.3 125 70.4
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 3.5e-38 162.5 126 66.7
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 1.9e-36 156.8 218 45.4
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 2.1e-35 153.3 125 64.8
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 3.7e-35 152.5 102 71.6
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.4e-34 150.6 140 60.0
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 1.2e-33 147.5 114 65.8
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 1.4e-31 140.6 107 66.4
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 7.9e-14 81.6 90 55.6
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 7.4e-12 75.1 62 61.3
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 6.1e-06 55.5 170 28.2
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 6.1e-06 55.5 170 28.2


User provided reference genes

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