Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g06770 Schrenkiella parvula HOM05D010817 ORTHO05D000721 2.0e-159 565.8 315 100.0
Thhalv10010589m.g Eutrema salsugineum HOM05D010817 ORTHO05D000721 2.4e-83 313.2 298 70.5
BcaC08g44747 Brassica carinata HOM05D010817 ORTHO05D000721 1.4e-80 303.9 332 58.4
C06p22860 Brassica napus HOM05D010817 ORTHO05D000721 1.4e-80 303.9 332 58.4
A07p22570 Brassica napus HOM05D010817 ORTHO05D000721 5.1e-78 295.4 294 61.9
BraA07t29934Z Brassica rapa HOM05D010817 ORTHO05D000721 1.4e-75 287.3 310 59.4
BcaB02g08403 Brassica carinata HOM05D010817 ORTHO05D000721 3.4e-74 282.7 302 57.3
BolC6t37484H Brassica oleracea HOM05D010817 ORTHO05D000721 1.3e-73 280.8 323 56.0
Carub.0005s2246 Capsella rubella HOM05D010817 ORTHO05D000721 1.4e-72 277.3 298 57.4
BcaB02g07676 Brassica carinata HOM05D010817 ORTHO05D000721 1.5e-69 267.3 331 54.4
AL5G36940 Arabidopsis lyrata HOM05D010817 ORTHO05D000721 6.4e-65 251.9 303 62.0
CARHR165790 Cardamine hirsuta HOM05D010817 ORTHO05D000721 3.5e-63 246.1 316 52.5
A04p04300 Brassica napus HOM05D010817 ORTHO05D000721 1.3e-60 237.7 327 51.4
AT3G55690 Arabidopsis thaliana HOM05D010817 ORTHO05D000721 6.9e-59 231.9 303 60.4
BraA04t16141Z Brassica rapa HOM05D010817 ORTHO05D000721 2.2e-57 226.9 332 49.7
BolC4t25132H Brassica oleracea HOM05D010817 ORTHO05D000721 1.5e-53 214.2 354 51.7
BcaC02g09784 Brassica carinata HOM05D010817 ORTHO05D000721 4.3e-53 212.6 354 51.4
C04p36650 Brassica napus HOM05D010817 ORTHO05D000721 4.3e-53 212.6 354 51.4
Aa31LG10G10690 Aethionema arabicum HOM05D010817 ORTHO05D000721 7.9e-39 165.2 281 45.2
THA.LOC104809429 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 3.8e-33 146.4 348 35.9
THA.LOC104824295 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 7.9e-31 138.7 369 35.2
THA.LOC104810062 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 3.9e-30 136.3 326 37.1
Aa31LG5G19750 Aethionema arabicum HOM05D001128 ORTHO05D000721 2.9e-25 120.2 321 36.8
CARHR134790 Cardamine hirsuta HOM05D012316 ORTHO05D000721 6.1e-23 112.5 302 35.8
Sp4g22160 Schrenkiella parvula HOM05D012316 ORTHO05D000721 1.0e-22 111.7 296 35.8
AL4G37440 Arabidopsis lyrata HOM05D012316 ORTHO05D000721 3.0e-22 110.2 297 37.0
AT2G39870 Arabidopsis thaliana HOM05D012316 ORTHO05D000721 8.8e-22 108.6 271 38.7
Carub.0004s2199 Capsella rubella HOM05D012316 ORTHO05D000721 1.7e-20 104.4 294 34.4
Thecc.10G030500 Theobroma cacao HOM05D001128 ORTHO05D000721 9.1e-19 98.6 272 35.7
Thhalv10017947m.g Eutrema salsugineum HOM05D012316 ORTHO05D000721 2.9e-17 93.6 285 34.4
A04p30210 Brassica napus HOM05D001949 ORTHO05D003065 3.8e-17 93.2 251 36.3
BraA04t18487Z Brassica rapa HOM05D012316 ORTHO05D000721 3.8e-17 93.2 250 36.8
Gohir.D04G065500 Gossypium hirsutum HOM05D001128 ORTHO05D000721 3.8e-17 93.2 235 38.7
COL.COLO4_25581 Corchorus olitorius HOM05D001128 ORTHO05D000721 1.9e-16 90.9 278 34.9
Gohir.A05G346700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.9e-16 90.9 234 37.2
Gorai.012G073700 Gossypium raimondii HOM05D001128 ORTHO05D000721 3.2e-16 90.1 234 38.0
Cpa.g.sc19.247 Carica papaya HOM05D001128 ORTHO05D000721 4.2e-16 89.7 274 34.7
BcaB02g09076 Brassica carinata HOM05D012316 ORTHO05D000721 7.2e-16 89.0 268 36.2
MD01G1142200 Malus domestica HOM05D001128 ORTHO05D000721 1.2e-15 88.2 272 34.2
C04p67650 Brassica napus HOM05D001949 ORTHO05D003065 8.0e-15 85.5 254 35.4
BolC4t28264H Brassica oleracea HOM05D012316 ORTHO05D000721 8.0e-15 85.5 254 35.4
C04p07640 Brassica napus HOM05D012316 ORTHO05D000721 6.7e-14 82.4 291 32.0
FAN06G2816 Fragaria x ananassa HOM05D001128 ORTHO05D000721 8.8e-14 82.0 305 32.8
Duzib128G2050 Durio zibethinus HOM05D001128 ORTHO05D000721 1.5e-13 81.3 98 55.1
FvH4_7g23630 Fragaria vesca HOM05D001128 ORTHO05D000721 2.0e-13 80.9 301 32.6
FAN06G3577 Fragaria x ananassa HOM05D001128 ORTHO05D000721 3.3e-13 80.1 305 32.5
FAN10G3504 Fragaria x ananassa HOM05D001128 ORTHO05D000721 3.3e-13 80.1 300 32.3
BolC4t22380H Brassica oleracea HOM05D012316 ORTHO05D000721 7.5e-13 79.0 295 30.5
Potri.010G195800 Populus trichocarpa HOM05D001128 ORTHO05D000721 7.5e-13 79.0 284 32.0
BraA05t19623Z Brassica rapa HOM05D012316 ORTHO05D000721 9.7e-13 78.6 267 38.6
FAN01G1897 Fragaria x ananassa HOM05D001128 ORTHO05D000721 9.7e-13 78.6 301 31.9
BcaC02g12120 Brassica carinata HOM05D012316 ORTHO05D000721 1.3e-12 78.2 292 37.7
MD07G1207900 Malus domestica HOM05D001128 ORTHO05D000721 1.7e-12 77.8 290 31.4
Prupe.2G243200 Prunus persica HOM05D001128 ORTHO05D000721 2.8e-12 77.0 279 31.9
A05p06540 Brassica napus HOM05D012316 ORTHO05D000721 4.8e-12 76.3 267 39.0
Gohir.A10G226400 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.1e-11 75.1 100 54.0
Gohir.D10G238700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.1e-11 75.1 100 54.0
Gorai.011G274600 Gossypium raimondii HOM05D001128 ORTHO05D000721 1.1e-11 75.1 100 54.0
RcHm_v2.0_Chr1g0368901 Rosa chinensis HOM05D001128 ORTHO05D000721 1.1e-11 75.1 315 29.8
CANSAT56G3374 Cannabis sativa HOM05D001128 ORTHO05D000721 1.8e-11 74.3 298 31.9
arahy.Tifrunner.gnm1.ann1.1NAQ44 Arachis hypogaea HOM05D001128 ORTHO05D000721 3.1e-11 73.6 272 30.5
Dinv34448 Davidia involucrata HOM05D001128 ORTHO05D000721 9.1e-11 72.0 295 31.2
Sabra10G0150300 Salix brachista HOM05D001128 ORTHO05D000721 9.1e-11 72.0 284 30.6
Actinidia02898 Actinidia chinensis HOM05D001128 ORTHO05D000721 1.6e-10 71.2 290 29.7
Atru.chr12.272 Acer truncatum HOM05D001128 ORTHO05D000721 2.7e-10 70.5 115 47.0
Ca_17132_v3 Cicer arietinum L. HOM05D001128 ORTHO05D000721 2.7e-10 70.5 242 32.2
arahy.Tifrunner.gnm1.ann1.U326PE Arachis hypogaea HOM05D001128 ORTHO05D000721 4.5e-10 69.7 262 29.8
Duzib106G0526 Durio zibethinus HOM05D001128 ORTHO05D000721 1.0e-09 68.6 98 50.0
Potri.008G062200 Populus trichocarpa HOM05D001128 ORTHO05D000721 1.3e-09 68.2 286 30.4
Ciclev10031729m.g Citrus clementina HOM05D001128 ORTHO05D000721 1.7e-09 67.8 260 31.9
Haze_17155 Corylus avellana HOM05D001128 ORTHO05D000721 1.7e-09 67.8 143 42.0
CiPaw.02G188400 Carya illinoinensis HOM05D001128 ORTHO05D000721 5.0e-09 66.2 300 31.0
FAN03G2145 Fragaria x ananassa HOM05D001128 ORTHO05D000721 5.0e-09 66.2 102 47.1
QL08p062120 Quercus lobata HOM05D001128 ORTHO05D000721 5.0e-09 66.2 123 43.9
Phvul.001G238700 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 8.5e-09 65.5 289 29.1
Cfa001394 Carpinus fangiana HOM05D001128 ORTHO05D000721 1.9e-08 64.3 143 41.3
TAR633G0212 Trochodendron aralioides HOM05D001128 ORTHO05D000721 1.9e-08 64.3 317 27.8
Manes.10G020800 Manihot esculenta HOM05D001128 ORTHO05D000721 2.5e-08 63.9 323 27.2
arahy.Tifrunner.gnm1.ann1.EVQB8B Arachis hypogaea HOM05D001128 ORTHO05D000721 3.2e-08 63.5 282 29.4
Glyma.11G225400 Glycine max HOM05D001128 ORTHO05D000721 4.2e-08 63.2 267 29.2
Lj1A946G35 Lonicera japonica HOM05D001128 ORTHO05D000721 4.2e-08 63.2 227 31.3
Manes.07G123000 Manihot esculenta HOM05D001128 ORTHO05D000721 7.2e-08 62.4 293 28.7
Nn2g11296 Nelumbo nucifera HOM05D001128 ORTHO05D000721 7.2e-08 62.4 278 28.1
Glyma.18G031800 Glycine max HOM05D001128 ORTHO05D000721 9.4e-08 62.0 273 30.4
Lalb_Chr18g0052901 Lupinus albus HOM05D001128 ORTHO05D000721 9.4e-08 62.0 268 32.8
TPR.G11407 Trifolium pratense HOM05D001128 ORTHO05D000721 1.2e-07 61.6 253 30.4
Psat2g036720 Pisum sativum HOM05D001128 ORTHO05D000721 1.6e-07 61.2 291 28.2
Lj6g0007644 Lotus japonicus HOM05D001128 ORTHO05D000721 2.1e-07 60.8 302 28.1
Hma1.2p1_0026F.1_g016650 Hydrangea macrophylla HOM05D001128 ORTHO05D000721 2.7e-07 60.5 362 27.9
CiPaw.01G293700 Carya illinoinensis HOM05D001128 ORTHO05D000721 3.6e-07 60.1 127 43.3
vmacro20201 Vaccinium macrocarpon HOM05D001128 ORTHO05D000721 8.0e-07 58.9 229 29.3
Dinv16282 Davidia involucrata HOM05D001128 ORTHO05D000721 1.0e-06 58.5 276 30.1
LjContig00141g0001836 Lotus japonicus HOM05D001128 ORTHO05D000721 1.0e-06 58.5 96 41.7
Sabra08G0045800 Salix brachista HOM05D001128 ORTHO05D000721 1.8e-06 57.8 96 46.9
TAR623G0478 Trochodendron aralioides HOM05D001128 ORTHO05D000721 2.3e-06 57.4 275 26.9
HanXRQChr10g0292031 Helianthus annuus HOM05D001128 ORTHO05D000721 4.0e-06 56.6 211 29.4
Psat5g125600 Pisum sativum HOM05D001128 ORTHO05D000721 4.0e-06 56.6 246 28.0
arahy.Tifrunner.gnm1.ann1.RKI1B6 Arachis hypogaea HOM05D001128 ORTHO05D000721 8.8e-06 55.5 109 44.0
PSO384G2375 Papaver somniferum HOM05D001128 ORTHO05D000721 8.8e-06 55.5 322 27.0


User provided reference genes

Program Settings