Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g06510 Schrenkiella parvula HOM05D007655 ORTHO05D009698 7.1e-147 524.2 332 100.0
C08p31340 Brassica napus HOM05D007655 ORTHO05D009698 1.3e-127 460.3 336 88.1
BolC8t50755H Brassica oleracea HOM05D007655 ORTHO05D009698 1.3e-127 460.3 336 88.1
A09p48980 Brassica napus HOM05D007655 ORTHO05D009698 2.1e-127 459.5 334 88.9
BraA09t40353Z Brassica rapa HOM05D007655 ORTHO05D009698 2.1e-127 459.5 334 88.9
AT3G56030 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 2.4e-123 446.0 333 79.9
CARHR166100 Cardamine hirsuta HOM05D007655 ORTHO05D009698 1.3e-121 440.3 328 88.1
AL5G37300 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 8.7e-121 437.6 331 79.8
Thhalv10006093m.g Eutrema salsugineum HOM05D007655 ORTHO05D009698 4.0e-118 428.7 330 86.4
Carub.0005s2276 Capsella rubella HOM05D007655 ORTHO05D009698 9.0e-118 427.6 333 79.6
Aa31LG10G10970 Aethionema arabicum HOM05D007655 ORTHO05D009698 1.8e-94 350.1 329 74.8
Aa31LG5G19330 Aethionema arabicum HOM05D007655 ORTHO05D009698 2.0e-93 346.7 330 71.2
CARHR135280 Cardamine hirsuta HOM05D007655 ORTHO05D009698 4.4e-72 275.8 331 64.7
AL4G37960 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 1.6e-69 267.3 331 64.0
AT2G40240 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 3.5e-69 266.2 331 64.4
Carub.0004s2246 Capsella rubella HOM05D007655 ORTHO05D009698 2.3e-65 253.4 330 63.3
Haze_22616 Corylus avellana HOM05D007655 ORTHO05D009698 2.0e-53 213.8 326 47.5
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 6.0e-53 212.2 314 54.1
Cfa013933 Carpinus fangiana HOM05D007655 ORTHO05D009698 1.0e-52 211.5 333 44.1
THA.LOC104810115 Tarenaya hassleriana HOM05D007655 ORTHO05D009698 1.0e-52 211.5 330 56.4
Cc00_g02280 Coffea canephora HOM05D007655 ORTHO05D009698 1.6e-50 204.1 302 52.0
CiPaw.02G194200 Carya illinoinensis HOM05D007655 ORTHO05D009698 3.4e-48 196.4 330 45.5
Ca_19338_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 4.1e-46 189.5 331 39.9
FAN06G4929 Fragaria x ananassa HOM05D007655 ORTHO05D009698 5.4e-46 189.1 331 51.4
Psat1g113880 Pisum sativum HOM05D007655 ORTHO05D009698 5.4e-46 189.1 332 34.3
FvH4_7g24790 Fragaria vesca HOM05D007655 ORTHO05D009698 1.6e-45 187.6 331 51.4
Lalb_Chr03g0033351 Lupinus albus HOM05D007655 ORTHO05D009698 1.6e-45 187.6 317 36.0
PGR044G0328 Punica granatum HOM05D007655 ORTHO05D009698 2.1e-45 187.2 313 49.2
TPR.G40357 Trifolium pratense HOM05D007655 ORTHO05D009698 6.0e-45 185.7 331 34.4
Hma1.2p1_0523F.1_g172110 Hydrangea macrophylla HOM05D007655 ORTHO05D009698 3.0e-44 183.3 325 47.4
DCAR_029510 Daucus carota HOM05D007655 ORTHO05D009698 5.0e-44 182.6 287 39.0
Nitab4.5_0002701g0030 Nicotiana tabacum HOM05D007655 ORTHO05D009698 5.0e-44 182.6 288 50.7
Atru.chr12.88 Acer truncatum HOM05D007655 ORTHO05D009698 2.5e-43 180.3 291 37.1
CAN.G1161.24 Capsicum annuum HOM05D007655 ORTHO05D009698 2.5e-43 180.3 310 43.9
Lj2g0024512 Lotus japonicus HOM05D007655 ORTHO05D009698 9.5e-43 178.3 330 46.4
RcHm_v2.0_Chr1g0370651 Rosa chinensis HOM05D007655 ORTHO05D009698 1.2e-42 177.9 334 50.9
Cpa.g.sc19.153 Carica papaya HOM05D007655 ORTHO05D009698 1.6e-42 177.6 332 50.9
Medtr6g065100 Medicago truncatula HOM05D007655 ORTHO05D009698 8.1e-42 175.3 333 45.0
Gohir.A06G170600 Gossypium hirsutum HOM05D007655 ORTHO05D009698 3.1e-41 173.3 335 49.9
QL08p063505 Quercus lobata HOM05D007655 ORTHO05D009698 4.0e-41 172.9 332 50.3
MSTRG.197 Avicennia marina HOM05D007655 ORTHO05D009698 4.4e-40 169.5 284 35.9
Actinidia00669 Actinidia chinensis HOM05D007655 ORTHO05D009698 5.8e-40 169.1 308 35.4
Ca_25253_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 7.5e-40 168.7 315 33.0
TWI09G1069 Tripterygium wilfordii HOM05D007655 ORTHO05D009698 2.2e-39 167.2 330 50.3
Glyma.09G157400 Glycine max HOM05D007655 ORTHO05D009698 4.1e-38 162.9 291 50.5
Phvul.004G132400 Phaseolus vulgaris HOM05D007655 ORTHO05D009698 3.5e-37 159.8 308 43.5
FAN10G0222 Fragaria x ananassa HOM05D007655 ORTHO05D009698 7.8e-37 158.7 326 46.3
VMungo0464G0151 Vigna mungo HOM05D007655 ORTHO05D009698 6.6e-36 155.6 313 47.0
Aqoxy3G03604 Aquilegia oxysepala HOM05D007655 ORTHO05D009698 1.1e-35 154.8 284 52.5
HanXRQChr09g0253251 Helianthus annuus HOM05D007655 ORTHO05D009698 2.5e-35 153.7 291 41.2
Lj1P959T25 Lonicera japonica HOM05D007655 ORTHO05D009698 5.6e-35 152.5 302 48.7
COL.COLO4_06431 Corchorus olitorius HOM05D007655 ORTHO05D009698 1.6e-34 151.0 329 46.5
Thecc.10G013100 Theobroma cacao HOM05D007655 ORTHO05D009698 1.8e-33 147.5 337 47.5
Nitab4.5_0006468g0020 Nicotiana tabacum HOM05D007655 ORTHO05D009698 8.9e-33 145.2 330 46.4
Sc14g0002050 Simmondsia chinensis HOM05D007655 ORTHO05D009698 2.6e-32 143.7 295 45.8
TAR131G0001 Trochodendron aralioides HOM05D007655 ORTHO05D009698 2.6e-32 143.7 312 49.0
TAR623G1347 Trochodendron aralioides HOM05D007655 ORTHO05D009698 2.6e-32 143.7 312 49.0
PGSC0003DMG400027723 Solanum tuberosum HOM05D007655 ORTHO05D009698 1.3e-31 141.4 329 45.0
Solyc03g095960.1 Solanum lycopersicum HOM05D007655 ORTHO05D009698 3.8e-31 139.8 328 45.1
Sopen03g025960 Solanum pennellii HOM05D007655 ORTHO05D009698 3.8e-31 139.8 328 44.8
CSS0030670 Camellia sinensis var. sinensis HOM05D007655 ORTHO05D009698 1.1e-30 138.3 190 58.9
Ciclev10033792m.g Citrus clementina HOM05D007655 ORTHO05D000636 1.1e-30 138.3 315 48.6
GSVIVG01032781001 Vitis vinifera HOM05D007655 ORTHO05D009698 3.2e-30 136.7 303 49.5
FAN03G2547 Fragaria x ananassa HOM05D007655 ORTHO05D009698 9.2e-30 135.2 250 53.6
CANSAT56G4119 Cannabis sativa HOM05D007655 ORTHO05D009698 2.1e-29 134.0 287 48.4
Gohir.D06G178400 Gossypium hirsutum HOM05D007655 ORTHO05D009698 3.0e-28 130.2 335 45.1
ECA232G4997 Erigeron canadensis HOM05D007655 ORTHO05D009698 3.9e-28 129.8 331 42.9
Gorai.N006800 Gossypium raimondii HOM05D007655 ORTHO05D009698 4.3e-27 126.3 335 44.8
Rhsim09G0178900 Rhododendron simsii HOM05D007655 ORTHO05D009698 5.6e-27 125.9 306 47.1
Sopen03g025950 Solanum pennellii HOM05D007655 ORTHO05D009698 1.2e-26 124.8 315 44.1
Migut.F01479 Erythranthe guttata HOM05D007655 ORTHO05D009698 2.1e-26 124.0 284 47.5
vmacro10028 Vaccinium macrocarpon HOM05D007655 ORTHO05D009698 5.3e-25 119.4 303 47.2
Duzib106G0934 Durio zibethinus HOM05D007655 ORTHO05D009698 2.0e-24 117.5 287 48.1
arahy.Tifrunner.gnm1.ann1.L8T4NM Arachis hypogaea HOM05D007655 ORTHO05D009698 3.4e-24 116.7 143 44.8
Prupe.2G253200 Prunus persica HOM05D000815 ORTHO05D000636 2.9e-23 113.6 303 40.9
arahy.Tifrunner.gnm1.ann1.P4Y6YZ Arachis hypogaea HOM05D000585 ORTHO05D001841 3.2e-22 110.2 143 43.4
Haze_17251 Corylus avellana HOM05D007655 ORTHO05D009698 5.4e-22 109.4 145 40.7
FAN01G0024 Fragaria x ananassa HOM05D007655 ORTHO05D009698 2.5e-19 100.5 196 55.6
MBI15_g28821_MAGBIO Magnolia biondii HOM05D007655 ORTHO05D009698 5.6e-19 99.4 307 37.8
Peaxi162Scf00304g00006 Petunia axillaris HOM05D007655 ORTHO05D009698 2.4e-17 94.0 296 27.4
Lsat_1_v5_gn_9_61061 Lactuca sativa HOM05D007655 ORTHO05D009698 7.6e-16 89.0 284 44.7
Oeu029071.1 Olea europaea HOM05D007655 ORTHO05D009698 3.8e-15 86.7 293 44.7
Lalb_Chr19g0131421 Lupinus albus HOM05D007655 ORTHO05D009698 4.9e-15 86.3 163 31.3
SalBow5G5388 Salvia bowleyana HOM05D007655 ORTHO05D009698 4.2e-14 83.2 151 37.1
Nn2g13207 Nelumbo nucifera HOM05D007655 ORTHO05D009698 4.6e-13 79.7 81 50.6
Potri.008G141700 Populus trichocarpa HOM05D007655 ORTHO05D009698 6.7e-12 75.9 176 28.4
CDE12G0438 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 3.3e-11 73.6 96 41.7
ATR0174G045 Amborella trichopoda HOM05D007655 ORTHO05D009698 9.6e-11 72.0 136 30.9
CDE06G0331 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 1.1e-09 68.6 283 36.4
CDE04G2579 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 1.3e-07 61.6 106 32.1
Gohir.D07G184750 Gossypium hirsutum HOM05D007655 ORTHO05D009698 1.7e-07 61.2 107 40.2
Gorai.001G205200 Gossypium raimondii HOM05D007655 ORTHO05D009698 1.4e-06 58.2 101 38.6


User provided reference genes

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