Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 1.1e-226 789.6 410 100.0
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 2.7e-196 688.7 411 88.1
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 2.7e-196 688.7 411 88.1
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 7.8e-196 687.2 417 87.8
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 2.5e-194 682.2 410 88.0
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 3.3e-194 681.8 410 87.8
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 3.1e-192 675.2 409 86.6
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 9.9e-191 670.2 407 87.0
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 4.9e-190 667.9 412 86.9
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 1.1e-181 640.2 382 89.8
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 1.5e-146 523.5 407 71.0
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 4.2e-133 478.8 399 66.7
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 4.7e-132 475.3 369 69.6
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 1.1e-130 470.7 375 66.9
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 2.0e-130 469.9 403 64.3
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 2.8e-129 466.1 382 67.0
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 2.8e-129 466.1 401 63.6
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 4.8e-129 465.3 413 63.2
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 3.1e-128 462.6 398 64.8
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.1e-128 462.6 398 64.8
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 3.1e-128 462.6 368 67.1
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 3.1e-128 462.6 401 63.8
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 5.3e-128 461.8 368 67.9
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 1.5e-127 460.3 411 62.0
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.5e-127 459.1 398 64.6
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 3.5e-127 459.1 368 67.1
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 3.2e-125 452.6 392 62.0
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 2.1e-124 449.9 361 67.9
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 2.7e-124 449.5 370 66.5
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 6.1e-124 448.4 336 70.8
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 3.0e-123 446.0 370 66.8
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 6.7e-123 444.9 374 65.2
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 8.8e-123 444.5 379 64.6
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 1.1e-122 444.1 399 61.9
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 2.6e-122 443.0 368 64.7
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 5.7e-122 441.8 368 65.5
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 5.7e-122 441.8 426 59.9
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.7e-121 440.3 366 66.4
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 4.8e-121 438.7 350 68.9
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 4.8e-121 438.7 371 64.2
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 6.3e-121 438.3 371 62.0
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.1e-120 437.6 372 65.6
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 1.4e-120 437.2 362 64.9
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 3.1e-120 436.0 368 65.8
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.3e-120 435.3 345 69.0
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 9.1e-120 434.5 401 61.3
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.6e-119 433.7 374 65.0
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 1.6e-119 433.7 373 61.4
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 4.5e-119 432.2 358 65.6
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 5.9e-119 431.8 374 62.6
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 5.9e-119 431.8 399 59.4
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 2.9e-118 429.5 359 61.8
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 8.5e-118 427.9 376 62.0
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 2.5e-117 426.4 370 60.3
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 4.2e-117 425.6 375 61.6
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 5.5e-117 425.2 348 64.4
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 1.2e-116 424.1 368 63.3
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 2.1e-116 423.3 351 61.8
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 8.0e-116 421.4 369 61.8
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.2e-115 418.7 468 54.3
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.2e-114 417.5 374 58.0
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 2.0e-114 416.8 367 60.8
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 5.7e-114 415.2 334 66.2
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 7.5e-114 414.8 336 66.1
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 1.4e-112 410.6 354 61.9
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 1.8e-112 410.2 247 84.6
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 5.4e-112 408.7 368 61.7
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 5.4e-112 408.7 387 59.2
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 2.0e-111 406.8 371 59.6
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 7.7e-111 404.8 443 55.5
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 2.2e-110 403.3 332 63.3
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 2.2e-110 403.3 394 56.1
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 6.5e-110 401.7 375 61.6
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 6.1e-108 395.2 436 55.3
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 3.7e-105 386.0 329 62.3
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 8.3e-105 384.8 333 58.6
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 1.7e-102 377.1 348 60.6
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 2.9e-102 376.3 225 91.1
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 2.9e-102 376.3 341 58.4
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 5.0e-102 375.6 361 56.5
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 2.5e-101 373.2 348 55.5
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 1.2e-98 364.4 283 67.1
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 1.7e-97 360.5 343 56.0
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-97 359.8 312 62.8
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 9.2e-96 354.8 277 66.4
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 5.0e-94 349.0 335 54.3
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 9.5e-93 344.7 431 46.2
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 1.6e-92 344.0 275 65.5
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 2.3e-91 340.1 366 52.2
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 8.9e-91 338.2 383 51.2
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 1.1e-83 314.7 490 42.7
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 1.5e-82 310.8 243 65.8
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 1.9e-80 303.9 348 50.3
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 8.1e-76 288.5 338 50.9
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 1.4e-75 287.7 238 62.6
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 1.6e-71 274.2 239 61.1
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 3.5e-71 273.1 235 71.5
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 6.6e-70 268.9 228 62.7
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 2.1e-68 263.8 371 45.0
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 5.2e-67 259.2 212 63.7
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 1.4e-64 251.1 222 58.1
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 1.6e-63 247.7 328 45.7
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 1.9e-61 240.7 358 42.7
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 2.5e-61 240.4 429 40.6
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 2.8e-60 236.9 243 58.4
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 3.8e-57 226.5 332 38.9
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 9.3e-56 221.9 252 48.0
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 3.5e-55 219.9 236 58.1
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 2.0e-50 204.1 333 40.2
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 4.6e-47 193.0 238 49.2
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 1.0e-46 191.8 231 52.4
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 2.3e-46 190.7 198 51.0
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 7.6e-42 175.6 144 67.4
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 3.8e-41 173.3 344 35.2
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 5.5e-40 169.5 371 33.7
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 5.1e-38 162.9 129 66.7
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-37 161.0 235 38.7
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 2.5e-37 160.6 193 48.2
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 6.9e-35 152.5 291 34.7
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.9e-33 147.1 378 32.5
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 1.1e-32 145.2 133 58.6
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 4.2e-32 143.3 331 33.5
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 1.3e-30 138.3 80 93.8
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.5e-29 134.8 329 28.9
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 1.9e-29 134.4 139 51.8
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 1.8e-27 127.9 96 65.6
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.2e-26 125.2 362 27.9
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 1.5e-26 124.8 98 73.5
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 1.5e-26 124.8 84 72.6
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.5e-26 124.8 146 52.7
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 4.5e-26 123.2 120 54.2
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.9e-26 122.9 82 76.8
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 7.2e-24 115.9 104 66.3
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 3.0e-22 110.5 139 51.1
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.0e-22 110.5 101 63.4
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 6.7e-22 109.4 114 51.8
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 2.4e-19 100.9 100 55.0
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 3.1e-19 100.5 133 42.1
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 3.4e-18 97.1 82 56.1
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 1.3e-17 95.1 159 37.7
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 2.2e-17 94.4 66 66.7
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 6.5e-17 92.8 59 72.9
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 8.5e-17 92.4 67 76.1
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 2.1e-15 87.8 60 73.3
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 6.7e-14 82.8 90 44.4
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 3.3e-13 80.5 50 80.0
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 5.7e-13 79.7 107 43.9
FAN01G2288 Fragaria x ananassa HOM05D005062 ORTHO05D006410 7.4e-13 79.3 55 74.5
SEGI_13629 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 1.2e-10 72.0 58 58.6
Cre02.g095085 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D028578 2.0e-10 71.2 183 29.5
Cre02.g095086 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D028578 1.3e-09 68.6 236 25.0
RcHm_v2.0_Chr1g0332541 Rosa chinensis HOM05D005062 ORTHO05D006410 1.3e-09 68.6 52 65.4
MCO11G881 Micromonas commoda HOM05D005062 ORTHO05D028578 2.2e-09 67.8 336 25.6
Ca_12794_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 3.2e-08 63.9 51 60.8
TWI38G0474 Tripterygium wilfordii HOM05D000943 ORTHO05D008314 3.6e-07 60.5 356 23.0
CDE08G0076 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 8.0e-07 59.3 35 80.0
HanXRQChr10g0305601 Helianthus annuus HOM05D000943 ORTHO05D008314 1.0e-06 58.9 359 25.3
RcHm_v2.0_Chr5g0029301 Rosa chinensis HOM05D000943 ORTHO05D008314 1.0e-06 58.9 337 26.7
arahy.Tifrunner.gnm1.ann1.A1RUKD Arachis hypogaea HOM05D000943 ORTHO05D008314 1.4e-06 58.5 365 24.4
CANSAT56G1032 Cannabis sativa HOM05D000943 ORTHO05D008314 1.4e-06 58.5 351 23.9
arahy.Tifrunner.gnm1.ann1.AVJ0IE Arachis hypogaea HOM05D000943 ORTHO05D008314 3.0e-06 57.4 365 24.1
arahy.Tifrunner.gnm1.ann1.WT9QCD Arachis hypogaea HOM05D000943 ORTHO05D008314 3.0e-06 57.4 347 24.8
MELO3C034937.2 Cucumis melo HOM05D005062 ORTHO05D006410 4.0e-06 57.0 68 54.4
Lj3g0014038 Lotus japonicus HOM05D000943 ORTHO05D008314 5.2e-06 56.6 343 23.0
Gorai.002G045800 Gossypium raimondii HOM05D000943 ORTHO05D008314 6.7e-06 56.2 319 26.3
MD03G1251200 Malus domestica HOM05D000943 ORTHO05D008314 6.7e-06 56.2 327 24.8
Psat1g007600 Pisum sativum HOM05D000943 ORTHO05D008314 8.8e-06 55.8 337 24.9
TPR.G35008 Trifolium pratense HOM05D000943 ORTHO05D008314 8.8e-06 55.8 411 23.6


User provided reference genes

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