Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 4.8e-174 614.4 307 100.0
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 6.0e-108 394.8 245 84.5
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 2.5e-106 389.4 245 84.1
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 2.1e-100 369.8 246 80.9
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 6.2e-97 358.2 246 79.7
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.3e-94 350.5 246 77.6
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 1.3e-91 340.5 241 78.4
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 1.7e-91 340.1 241 78.4
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 6.6e-91 338.2 239 78.2
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 2.5e-90 336.3 239 78.2
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 2.5e-90 336.3 239 78.2
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 1.3e-89 334.0 241 77.2
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 2.1e-89 333.2 236 76.7
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 2.1e-89 333.2 236 76.7
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 3.6e-89 332.4 230 76.1
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 3.6e-89 332.4 230 76.1
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 1.8e-88 330.1 241 76.8
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 6.4e-86 321.6 250 70.4
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 6.4e-86 321.6 229 75.5
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 3.4e-79 299.3 248 66.9
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.3e-75 287.3 246 65.0
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.5e-74 283.9 249 63.9
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 9.4e-45 184.9 257 44.7
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 9.4e-45 184.9 257 44.7
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 3.6e-44 183.0 201 50.7
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 8.0e-44 181.8 248 43.1
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 4.0e-43 179.5 263 44.1
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 7.5e-42 175.3 210 49.0
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 7.5e-42 175.3 210 49.0
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 3.7e-41 172.9 216 47.7
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 4.8e-41 172.6 253 45.8
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 1.4e-40 171.0 251 45.8
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.4e-40 171.0 206 49.0
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.8e-40 170.6 221 47.1
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 2.4e-40 170.2 221 47.1
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 2.4e-40 170.2 214 46.7
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 2.4e-40 170.2 210 48.1
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 2.4e-40 170.2 210 48.1
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 4.1e-40 169.5 211 43.1
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 7.0e-40 168.7 266 42.9
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 9.1e-40 168.3 254 42.5
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.2e-39 167.9 209 48.3
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 2.0e-39 167.2 255 42.0
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 2.7e-39 166.8 264 41.7
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 2.7e-39 166.8 247 41.3
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 4.5e-39 166.0 176 48.9
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 5.9e-39 165.6 183 51.4
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 5.9e-39 165.6 253 44.7
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 7.7e-39 165.2 254 42.9
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 1.0e-38 164.9 262 42.0
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.0e-38 164.9 262 42.0
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 1.3e-38 164.5 249 41.4
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 2.2e-38 163.7 167 53.3
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 3.8e-38 162.9 213 46.0
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 5.0e-38 162.5 175 52.0
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 8.5e-38 161.8 169 47.9
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 1.9e-37 160.6 247 42.5
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 1.9e-37 160.6 245 39.2
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 4.2e-37 159.5 228 46.1
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 5.5e-37 159.1 211 46.9
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 7.2e-37 158.7 205 42.9
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 2.1e-36 157.1 252 41.7
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 2.7e-36 156.8 249 38.2
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 4.7e-36 156.0 166 48.8
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 6.1e-36 155.6 172 47.7
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 1.4e-35 154.5 246 43.1
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.8e-35 154.1 172 50.6
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.3e-35 153.7 183 47.0
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 2.3e-35 153.7 163 49.7
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 2.3e-35 153.7 202 45.5
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 3.0e-35 153.3 178 44.4
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.0e-35 152.9 175 46.9
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.0e-35 152.9 183 46.4
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 8.8e-35 151.8 183 46.4
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.2e-34 151.4 174 46.6
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 1.5e-34 151.0 175 41.1
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 2.0e-34 150.6 176 48.9
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 2.6e-34 150.2 245 42.4
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 2.6e-34 150.2 211 43.1
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.6e-34 150.2 175 41.1
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 3.4e-34 149.8 258 40.3
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 5.7e-34 149.1 168 48.8
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 5.7e-34 149.1 223 39.0
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 9.8e-34 148.3 202 46.5
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 1.7e-33 147.5 190 43.2
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 2.2e-33 147.1 248 41.5
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 6.3e-33 145.6 245 40.4
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 2.4e-32 143.7 170 41.2
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 3.1e-32 143.3 254 40.6
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 7.0e-32 142.1 174 42.0
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 7.0e-32 142.1 165 44.2
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 7.0e-32 142.1 165 44.2
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 9.1e-32 141.7 165 43.0
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 9.1e-32 141.7 245 40.4
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 1.2e-31 141.4 165 43.6
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 2.0e-31 140.6 179 41.9
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 2.7e-31 140.2 217 41.0
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 1.0e-30 138.3 159 47.2
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.2e-30 137.1 198 42.4
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 6.5e-30 135.6 187 44.4
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 6.5e-30 135.6 262 36.6
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 6.5e-30 135.6 162 42.6
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 6.5e-30 135.6 210 36.7
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 2.5e-29 133.7 176 42.6
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.6e-28 131.0 183 41.5
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 4.7e-28 129.4 209 36.4
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 8.0e-28 128.6 201 38.8
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 1.0e-27 128.3 220 40.5
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 1.0e-27 128.3 258 36.8
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 1.8e-27 127.5 222 38.7
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 5.2e-27 125.9 215 35.8
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 5.2e-27 125.9 187 40.1
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 6.8e-27 125.6 227 35.7
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 8.8e-27 125.2 248 34.7
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.5e-26 124.4 181 43.1
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 2.6e-26 123.6 178 41.0
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 2.6e-26 123.6 220 36.8
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 3.4e-26 123.2 191 38.2
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 4.4e-26 122.9 172 44.8
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 9.8e-26 121.7 241 35.3
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 1.7e-25 120.9 187 41.7
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 4.9e-25 119.4 223 37.2
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 4.9e-25 119.4 167 41.3
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 8.3e-25 118.6 238 33.6
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 2.4e-24 117.1 223 35.4
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 4.1e-24 116.3 232 34.5
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 9.2e-24 115.2 177 37.9
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 9.2e-24 115.2 177 37.9
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 3.5e-23 113.2 235 35.3
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 5.9e-23 112.5 164 42.7
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 5.9e-23 112.5 167 42.5
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 1.0e-22 111.7 170 41.8
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 1.0e-22 111.7 190 37.9
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 8.6e-22 108.6 168 42.3
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 1.1e-21 108.2 176 40.9
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 1.9e-21 107.5 217 34.6
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.3e-21 106.3 143 43.4
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 9.5e-21 105.1 190 37.9
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 6.1e-20 102.4 204 35.8
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 8.0e-20 102.1 143 42.0
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 8.0e-20 102.1 163 36.8
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 1.0e-19 101.7 167 37.1
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.4e-19 101.3 143 42.0
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 1.8e-19 100.9 259 30.5
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 2.3e-19 100.5 167 39.5
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 5.7e-18 95.9 164 32.9
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 1.7e-17 94.4 172 37.2
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.2e-15 88.2 184 35.3
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 3.5e-15 86.7 184 34.8
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.1e-13 81.6 163 31.3
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.5e-13 80.5 114 36.8
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 3.3e-13 80.1 171 33.9
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 7.3e-13 79.0 64 62.5
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.2e-12 78.2 89 41.6
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.6e-12 77.8 162 30.9
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 8.0e-12 75.5 103 39.8
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.0e-11 75.1 163 32.5
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 1.5e-10 71.2 75 49.3
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 1.5e-10 71.2 116 37.9
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 2.6e-10 70.5 122 34.4
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 3.4e-10 70.1 167 30.5
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 7.5e-10 68.9 201 30.8
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 4.9e-09 66.2 78 43.6
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 7.0e-08 62.4 73 41.1


User provided reference genes

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