Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g06040 Schrenkiella parvula HOM05D010499 ORTHO05D013671 0.0e+00 3100.5 1610 100.0
Thhalv10005743m.g Eutrema salsugineum HOM05D010499 ORTHO05D013671 0.0e+00 1926.8 1647 67.6
BcaB02g07653 Brassica carinata HOM05D010499 ORTHO05D013671 0.0e+00 1884.0 1641 67.9
BolC6t37526H Brassica oleracea HOM05D010499 ORTHO05D013671 0.0e+00 1773.1 1647 65.6
BcaC08g44783 Brassica carinata HOM05D010499 ORTHO05D013671 0.0e+00 1772.3 1636 66.1
C06p23550 Brassica napus HOM05D010499 ORTHO05D013671 0.0e+00 1762.7 1636 65.8
AL5G37740 Arabidopsis lyrata HOM05D010499 ORTHO05D013671 0.0e+00 1761.5 1595 63.9
AT3G56410 Arabidopsis thaliana HOM05D010499 ORTHO05D013671 0.0e+00 1729.1 1597 63.6
A07p22920 Brassica napus HOM05D010499 ORTHO05D013671 0.0e+00 1662.9 1627 62.6
BraA07t29958Z Brassica rapa HOM05D010499 ORTHO05D013671 0.0e+00 1641.7 1625 61.9
CARHR166540 Cardamine hirsuta HOM05D010499 ORTHO05D013671 0.0e+00 1384.0 1635 55.7
Carub.0005s2319 Capsella rubella HOM05D010499 ORTHO05D013671 0.0e+00 1234.2 1646 49.5
Aa31LG10G11300 Aethionema arabicum HOM05D010499 ORTHO05D013671 0.0e+00 1161.4 1672 48.9
THA.LOC104824598 Tarenaya hassleriana HOM05D010499 ORTHO05D013671 5.8e-77 294.3 587 38.5
A09p49360 Brassica napus HOM05D010499 ORTHO05D023864 5.1e-65 254.6 591 37.2
THA.LOC104814291 Tarenaya hassleriana HOM05D010499 ORTHO05D013671 3.4e-53 215.3 590 34.4
BolC8t50793H Brassica oleracea HOM05D010499 ORTHO05D023864 6.9e-38 164.5 333 42.0
C08p31720 Brassica napus HOM05D010499 ORTHO05D023864 9.0e-38 164.1 589 33.4
BcaC07g39955 Brassica carinata HOM05D010499 ORTHO05D023864 2.2e-31 142.9 258 44.2
Aa31LG3G3130 Aethionema arabicum HOM05D010499 ORTHO05D013671 5.3e-14 85.1 99 48.5
BraA09t40389Z Brassica rapa HOM05D010499 ORTHO05D023864 3.4e-13 82.4 79 60.8
Potri.019G061400 Populus trichocarpa HOM05D005345 ORTHO05D004682 7.2e-11 74.7 195 33.3
COL.COLO4_19477 Corchorus olitorius HOM05D005345 ORTHO05D004682 1.2e-10 73.9 119 37.8
CSS0033913 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 8.0e-10 71.2 140 33.6
Phvul.008G186500 Phaseolus vulgaris HOM05D005345 ORTHO05D004682 1.0e-09 70.9 163 33.7
Gohir.D04G011300 Gossypium hirsutum HOM05D005345 ORTHO05D004682 1.8e-09 70.1 65 47.7
TPR.G33944 Trifolium pratense HOM05D005345 ORTHO05D004682 1.8e-09 70.1 182 29.1
Duzib128G0800 Durio zibethinus HOM05D005345 ORTHO05D004682 3.0e-09 69.3 120 39.2
Ca_23243_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 3.9e-09 68.9 203 30.0
Cpa.g.sc19.39 Carica papaya HOM05D005345 ORTHO05D004682 6.7e-09 68.2 162 33.3
AUR62030590 Chenopodium quinoa HOM05D005345 ORTHO05D004682 6.7e-09 68.2 185 29.2
Gohir.A05G404400 Gossypium hirsutum HOM05D005345 ORTHO05D004682 6.7e-09 68.2 107 37.4
Duzib106G0455 Durio zibethinus HOM05D005345 ORTHO05D004682 8.8e-09 67.8 223 26.9
Lalb_Chr08g0239261 Lupinus albus HOM05D005345 ORTHO05D004682 8.8e-09 67.8 134 36.6
Psat5g069400 Pisum sativum HOM05D005345 ORTHO05D004682 8.8e-09 67.8 78 46.2
Thecc.10G185200 Theobroma cacao HOM05D005345 ORTHO05D004682 8.8e-09 67.8 191 31.9
Dinv21859 Davidia involucrata HOM05D005345 ORTHO05D004682 1.1e-08 67.4 171 31.6
THA.LOC104816507 Tarenaya hassleriana HOM05D010812 ORTHO05D004682 1.1e-08 67.4 220 30.0
Aqoxy4G03281 Aquilegia oxysepala HOM05D005345 ORTHO05D004682 1.5e-08 67.0 127 36.2
CARHR208070 Cardamine hirsuta HOM05D010812 ORTHO05D004682 1.5e-08 67.0 466 24.7
Ca_16857_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 1.5e-08 67.0 78 47.4
Ca_29505_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 1.5e-08 67.0 78 47.4
CSS0024314 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 2.0e-08 66.6 115 38.3
Gorai.012G013500 Gossypium raimondii HOM05D005345 ORTHO05D004682 2.0e-08 66.6 107 38.3
arahy.Tifrunner.gnm1.ann1.DZPX8Q Arachis hypogaea HOM05D005345 ORTHO05D004682 2.6e-08 66.2 120 35.8
arahy.Tifrunner.gnm1.ann1.E2ZVAX Arachis hypogaea HOM05D005345 ORTHO05D004682 2.6e-08 66.2 102 38.2
Gorai.011G206300 Gossypium raimondii HOM05D005345 ORTHO05D004682 2.6e-08 66.2 105 37.1
Sabra19G0075200 Salix brachista HOM05D005345 ORTHO05D004682 5.7e-08 65.1 194 29.4
Glyma.14G186800 Glycine max HOM05D005345 ORTHO05D004682 7.4e-08 64.7 124 35.5
Dinv34499 Davidia involucrata HOM05D005345 ORTHO05D004682 9.7e-08 64.3 126 35.7
Phvul.009G042600 Phaseolus vulgaris HOM05D005345 ORTHO05D004682 9.7e-08 64.3 130 36.9
VMungo1309G1748 Vigna mungo HOM05D005345 ORTHO05D004682 9.7e-08 64.3 148 35.1
LjContig00408g0007312 Lotus japonicus HOM05D005345 ORTHO05D004682 1.3e-07 63.9 158 31.0
Manes.10G003400 Manihot esculenta HOM05D005345 ORTHO05D004682 1.3e-07 63.9 174 30.5
Medtr3g093780 Medicago truncatula HOM05D005345 ORTHO05D004682 1.3e-07 63.9 194 30.4
Haze_17372 Corylus avellana HOM05D005345 ORTHO05D004682 1.7e-07 63.5 135 36.3
ECA238G0953 Erigeron canadensis HOM05D005345 ORTHO05D004682 1.7e-07 63.5 283 28.3
Sc01g0002940 Simmondsia chinensis HOM05D002045 ORTHO05D002014 1.7e-07 63.5 94 37.2
Hund13436 Selenicereus undatus HOM05D005345 ORTHO05D004682 2.2e-07 63.2 120 30.8
MD01G1169800 Malus domestica HOM05D005345 ORTHO05D004682 2.8e-07 62.8 216 29.2
Nn2g10264 Nelumbo nucifera HOM05D005345 ORTHO05D004682 2.8e-07 62.8 178 30.9
GSVIVG01032655001 Vitis vinifera HOM05D005345 ORTHO05D004682 2.8e-07 62.8 93 38.7
Atru.chr12.192 Acer truncatum HOM05D005345 ORTHO05D004682 3.7e-07 62.4 197 33.0
Thhalv10013098m.g Eutrema salsugineum HOM05D010812 ORTHO05D004682 3.7e-07 62.4 289 26.6
PGR044G0353 Punica granatum HOM05D005345 ORTHO05D004682 3.7e-07 62.4 95 38.9
Sed0015893 Sechium edule HOM05D005345 ORTHO05D004682 3.7e-07 62.4 240 29.2
Rhsim09G0186300 Rhododendron simsii HOM05D005345 ORTHO05D004682 4.8e-07 62.0 124 37.9
vmacro06904 Vaccinium macrocarpon HOM05D005345 ORTHO05D004682 4.8e-07 62.0 190 33.2
Oeu064002.1 Olea europaea HOM05D005345 ORTHO05D004682 6.3e-07 61.6 163 33.7
Cfa003827 Carpinus fangiana HOM05D002045 ORTHO05D002014 8.2e-07 61.2 102 38.2
Ciclev10030619m.g Citrus clementina HOM05D005345 ORTHO05D004682 8.2e-07 61.2 89 39.3
Lalb_Chr10g0102841 Lupinus albus HOM05D005345 ORTHO05D004682 8.2e-07 61.2 334 26.3
Nn5g26827 Nelumbo nucifera HOM05D005345 ORTHO05D004682 8.2e-07 61.2 129 31.8
Sed0004419 Sechium edule HOM05D005345 ORTHO05D004682 8.2e-07 61.2 126 33.3
Aa31LG11G6050 Aethionema arabicum HOM05D010812 ORTHO05D004682 1.1e-06 60.8 212 29.2
Glyma.06G141400 Glycine max HOM05D005345 ORTHO05D004682 1.1e-06 60.8 150 34.0
Gohir.A10G177500 Gossypium hirsutum HOM05D005345 ORTHO05D004682 1.1e-06 60.8 300 26.3
Oeu039387.1 Olea europaea HOM05D005345 ORTHO05D004682 1.4e-06 60.5 203 26.1
QL08p065100 Quercus lobata HOM05D005345 ORTHO05D004682 1.4e-06 60.5 367 24.5
EL10Ac5g12890 Beta vulgaris HOM05D002045 ORTHO05D002014 1.8e-06 60.1 208 26.4
vmacro09953 Vaccinium macrocarpon HOM05D005345 ORTHO05D004682 1.8e-06 60.1 124 37.9
Nitab4.5_0005979g0010 Nicotiana tabacum HOM05D005345 ORTHO05D004682 2.4e-06 59.7 172 30.8
Oeu018746.1 Olea europaea HOM05D005345 ORTHO05D004682 2.4e-06 59.7 136 29.4
Oeu018747.2 Olea europaea HOM05D005345 ORTHO05D004682 2.4e-06 59.7 136 29.4
TAR633G2169 Trochodendron aralioides HOM05D005345 ORTHO05D004682 2.4e-06 59.7 149 34.2
THA.LOC104802062 Tarenaya hassleriana HOM05D002045 ORTHO05D002014 3.1e-06 59.3 479 22.3
HanXRQChr07g0204951 Helianthus annuus HOM05D005345 ORTHO05D004682 4.1e-06 58.9 58 46.6
Lalb_Chr11g0067691 Lupinus albus HOM05D005345 ORTHO05D004682 5.3e-06 58.5 180 32.2
Gohir.D13G008100 Gossypium hirsutum HOM05D005345 ORTHO05D004682 7.0e-06 58.2 102 38.2
Gorai.013G008500 Gossypium raimondii HOM05D005345 ORTHO05D004682 7.0e-06 58.2 102 38.2
vmacro22514 Vaccinium macrocarpon HOM05D002045 ORTHO05D002014 7.0e-06 58.2 50 56.0
MSTRG.8382 Avicennia marina HOM05D005345 ORTHO05D004682 9.1e-06 57.8 116 31.9
Lj1A968T60 Lonicera japonica HOM05D005345 ORTHO05D004682 9.1e-06 57.8 176 31.2
Rhsim01G0170600 Rhododendron simsii HOM05D002045 ORTHO05D002014 9.1e-06 57.8 69 44.9
Sp6g37640 Schrenkiella parvula HOM05D010812 ORTHO05D004682 9.1e-06 57.8 143 30.1


User provided reference genes

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