Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g05720 Schrenkiella parvula HOM05D005945 ORTHO05D006749 0.0e+00 1553.1 817 100.0
A09p49740 Brassica napus HOM05D005945 ORTHO05D006749 1.1e-311 1072.8 819 73.6
BraA09t40427Z Brassica rapa HOM05D005945 ORTHO05D006749 1.1e-311 1072.8 819 73.6
BcaC07g39998 Brassica carinata HOM05D005945 ORTHO05D006749 7.5e-307 1057.0 822 73.4
C08p32110 Brassica napus HOM05D005945 ORTHO05D006749 7.5e-307 1057.0 822 73.4
BolC8t50829H Brassica oleracea HOM05D005945 ORTHO05D006749 7.2e-302 1040.4 822 72.4
BcaC07g40112 Brassica carinata HOM05D005945 ORTHO05D006749 1.6e-301 1039.3 824 72.5
Thhalv10005811m.g Eutrema salsugineum HOM05D005945 ORTHO05D006749 1.1e-294 1016.5 819 68.4
Carub.0005s2360 Capsella rubella HOM05D005945 ORTHO05D006749 4.2e-249 865.1 819 60.3
AL5G38260 Arabidopsis lyrata HOM05D005945 ORTHO05D006749 1.8e-236 823.2 823 59.1
AT3G56870 Arabidopsis thaliana HOM05D005945 ORTHO05D006749 2.8e-221 772.7 827 56.8
CARHR167020 Cardamine hirsuta HOM05D005945 ORTHO05D006749 5.6e-161 572.4 568 59.9
Aa31LG10G11720 Aethionema arabicum HOM05D005945 ORTHO05D006749 1.2e-142 511.5 833 43.2
THA.LOC104803244 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 1.1e-111 408.7 894 35.9
Cpa.g.sc64.76 Carica papaya HOM05D005945 ORTHO05D006749 1.0e-58 232.6 967 26.5
Thecc.08G024700 Theobroma cacao HOM05D005945 ORTHO05D006749 6.4e-56 223.4 905 26.5
Duzib093G2051 Durio zibethinus HOM05D005945 ORTHO05D006749 1.5e-52 212.2 916 27.2
COL.COLO4_26338 Corchorus olitorius HOM05D005945 ORTHO05D006749 4.3e-52 210.7 946 26.7
Gohir.D06G008100 Gossypium hirsutum HOM05D005945 ORTHO05D006749 3.4e-49 201.1 890 28.4
Gorai.010G010800 Gossypium raimondii HOM05D005945 ORTHO05D006749 1.4e-47 195.7 881 28.3
Actinidia15315 Actinidia chinensis HOM05D005945 ORTHO05D006749 1.5e-44 185.7 869 26.7
Gohir.A06G010700 Gossypium hirsutum HOM05D005945 ORTHO05D006749 3.3e-44 184.5 877 29.2
QL02p007988 Quercus lobata HOM05D005945 ORTHO05D006749 2.9e-40 171.4 962 24.6
Dinv39407 Davidia involucrata HOM05D005945 ORTHO05D006749 6.4e-40 170.2 855 25.3
Prupe.1G381200 Prunus persica HOM05D005945 ORTHO05D006749 1.1e-39 169.5 867 26.5
Potri.014G181200 Populus trichocarpa HOM05D005945 ORTHO05D006749 1.2e-38 166.0 1007 26.7
Cfa018140 Carpinus fangiana HOM05D005945 ORTHO05D006749 7.8e-38 163.3 862 24.9
CANSAT25G3494 Cannabis sativa HOM05D005945 ORTHO05D006749 1.5e-36 159.1 284 36.6
TWI12G1232 Tripterygium wilfordii HOM05D005945 ORTHO05D006749 4.3e-36 157.5 258 36.8
GSVIVG01009690001 Vitis vinifera HOM05D005945 ORTHO05D006749 2.3e-34 151.8 265 40.4
CSS0001698 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 5.2e-34 150.6 885 26.0
Haze_17984 Corylus avellana HOM05D005945 ORTHO05D006749 5.2e-34 150.6 831 25.2
CSS0038834 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 1.2e-33 149.4 864 25.6
TAR376G0838 Trochodendron aralioides HOM05D005945 ORTHO05D006749 3.4e-33 147.9 845 24.9
MD08G1033800 Malus domestica HOM05D005945 ORTHO05D006749 4.4e-33 147.5 335 34.3
Manes.18G028200 Manihot esculenta HOM05D005945 ORTHO05D006749 4.4e-33 147.5 874 24.6
Lsat_1_v5_gn_1_17620 Lactuca sativa HOM05D005945 ORTHO05D006749 9.9e-33 146.4 268 38.1
Cc10_g03040 Coffea canephora HOM05D005945 ORTHO05D006749 6.4e-32 143.7 254 39.4
Manes.05G161400 Manihot esculenta HOM05D005945 ORTHO05D006749 8.4e-32 143.3 875 24.2
Lj4A42T73 Lonicera japonica HOM05D005945 ORTHO05D006749 1.1e-31 142.9 133 51.1
Psat7g242000 Pisum sativum HOM05D005945 ORTHO05D006749 1.9e-31 142.1 278 36.0
TPR.G32532 Trifolium pratense HOM05D005945 ORTHO05D006749 1.9e-31 142.1 350 33.4
Oeu056183.1 Olea europaea HOM05D005945 ORTHO05D006749 7.1e-31 140.2 302 33.8
FAN15G0837 Fragaria x ananassa HOM05D005945 ORTHO05D006749 9.2e-31 139.8 329 35.0
arahy.Tifrunner.gnm1.ann1.Q0ZVI3 Arachis hypogaea HOM05D005945 ORTHO05D006749 1.2e-30 139.4 314 34.4
Gorai.005G107400 Gossypium raimondii HOM05D005945 ORTHO05D006749 1.6e-30 139.0 504 28.2
Oeu036192.1 Olea europaea HOM05D005945 ORTHO05D006749 1.6e-30 139.0 898 24.9
VMungo0331G0095 Vigna mungo HOM05D005945 ORTHO05D006749 2.1e-30 138.7 276 36.2
MELO3C010931.2 Cucumis melo HOM05D005945 ORTHO05D006749 2.7e-30 138.3 860 27.0
Gohir.D02G094500 Gossypium hirsutum HOM05D005945 ORTHO05D006749 4.6e-30 137.5 502 27.3
HanXRQChr04g0105591 Helianthus annuus HOM05D005945 ORTHO05D006749 4.6e-30 137.5 268 35.4
ClCG08G015230 Citrullus lanatus HOM05D005945 ORTHO05D006749 7.8e-30 136.7 867 27.3
FvH4_2g39990 Fragaria vesca HOM05D005945 ORTHO05D006749 7.8e-30 136.7 553 28.9
Sabra14G0141200 Salix brachista HOM05D005945 ORTHO05D006749 7.8e-30 136.7 986 24.4
Dinv36067 Davidia involucrata HOM05D005945 ORTHO05D006749 1.3e-29 136.0 221 38.9
FAN20G0334 Fragaria x ananassa HOM05D005945 ORTHO05D006749 3.0e-29 134.8 349 32.7
Nitab4.5_0000110g0520 Nicotiana tabacum HOM05D005945 ORTHO05D006749 3.0e-29 134.8 644 27.8
DCAR_008766 Daucus carota HOM05D005945 ORTHO05D006749 3.9e-29 134.4 857 24.6
FAN27G1966 Fragaria x ananassa HOM05D005945 ORTHO05D006749 5.1e-29 134.0 346 31.8
Phvul.010G012000 Phaseolus vulgaris HOM05D005945 ORTHO05D006749 5.1e-29 134.0 242 36.8
SGA_v2.0_scaffold326G48709 Striga asiatica HOM05D005945 ORTHO05D006749 1.1e-28 132.9 249 33.3
Atru.chr13.502 Acer truncatum HOM05D005945 ORTHO05D006749 1.5e-28 132.5 220 39.5
MSTRG.25161 Avicennia marina HOM05D005945 ORTHO05D006749 1.5e-28 132.5 266 34.2
RcHm_v2.0_Chr6g0300761 Rosa chinensis HOM05D005945 ORTHO05D006749 1.5e-28 132.5 254 36.2
PSO541G4169 Papaver somniferum HOM05D005945 ORTHO05D006749 3.3e-28 131.3 380 28.7
Medtr4g019490 Medicago truncatula HOM05D005945 ORTHO05D006749 5.6e-28 130.6 359 31.2
CsaV3_2G028570 Cucumis sativus L. HOM05D005945 ORTHO05D006749 7.3e-28 130.2 866 26.7
ECA247G0868 Erigeron canadensis HOM05D005945 ORTHO05D006749 9.6e-28 129.8 262 34.7
Eucgr.F01555 Eucalyptus grandis HOM05D005945 ORTHO05D006749 1.6e-27 129.0 844 24.1
Solyc04g080200.4 Solanum lycopersicum HOM05D005945 ORTHO05D006749 1.6e-27 129.0 383 30.8
Hund26580 Selenicereus undatus HOM05D005945 ORTHO05D006749 2.1e-27 128.6 244 34.8
Ca_03064_v3 Cicer arietinum L. HOM05D005945 ORTHO05D006749 2.8e-27 128.3 272 34.2
CiPaw.15G076000 Carya illinoinensis HOM05D005945 ORTHO05D006749 3.6e-27 127.9 1061 23.1
Nn5g29549 Nelumbo nucifera HOM05D005945 ORTHO05D006749 3.6e-27 127.9 902 24.4
PSO675G9049 Papaver somniferum HOM05D005945 ORTHO05D006749 3.6e-27 127.9 365 28.2
Sopen04g033790 Solanum pennellii HOM05D005945 ORTHO05D006749 3.6e-27 127.9 383 30.5
THA.LOC104803300 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 3.6e-27 127.9 190 47.4
Lj3g0003314 Lotus japonicus HOM05D005945 ORTHO05D006749 8.1e-27 126.7 317 32.5
Sed0009733 Sechium edule HOM05D005945 ORTHO05D006749 8.1e-27 126.7 895 23.9
Migut.C00710 Erythranthe guttata HOM05D005945 ORTHO05D006749 1.1e-26 126.3 684 24.9
HanXRQChr04g0105581 Helianthus annuus HOM05D005945 ORTHO05D006749 1.1e-26 126.3 277 34.7
Nitab4.5_0003783g0040 Nicotiana tabacum HOM05D005945 ORTHO05D006749 2.4e-26 125.2 652 26.7
TAR628G0886 Trochodendron aralioides HOM05D005945 ORTHO05D006749 2.4e-26 125.2 279 34.4
PGSC0003DMG400005162 Solanum tuberosum HOM05D005945 ORTHO05D006749 5.2e-26 124.0 657 26.8
Glyma.01G104600 Glycine max HOM05D005945 ORTHO05D006749 6.9e-26 123.6 314 32.8
Lalb_Chr03g0042671 Lupinus albus HOM05D005945 ORTHO05D006749 8.9e-26 123.2 283 32.5
Sc15g0006890 Simmondsia chinensis HOM05D005945 ORTHO05D006749 8.9e-26 123.2 837 24.6
MBI16_g17464_MAGBIO Magnolia biondii HOM05D005945 ORTHO05D006749 1.2e-25 122.9 259 35.1
arahy.Tifrunner.gnm1.ann1.01TKSZ Arachis hypogaea HOM05D005945 ORTHO05D006749 1.5e-25 122.5 347 32.0
MD15G1030400 Malus domestica HOM05D005945 ORTHO05D006749 2.9e-24 118.2 804 24.5
Glyma.03G071500 Glycine max HOM05D005945 ORTHO05D006749 8.4e-24 116.7 842 25.4
TAR628G0416 Trochodendron aralioides HOM05D005945 ORTHO05D006749 1.9e-23 115.5 179 38.0
PGR031G1506 Punica granatum HOM05D005945 ORTHO05D006749 5.4e-23 114.0 307 31.3
Aqoxy4G01586 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 7.1e-23 113.6 237 36.7
Lj2g0002553 Lotus japonicus HOM05D005945 ORTHO05D006749 6.0e-22 110.5 305 31.8
Aqoxy6G01057 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 1.7e-21 109.0 237 32.9
Peaxi162Scf00690g00118 Petunia axillaris HOM05D005945 ORTHO05D006749 1.7e-21 109.0 656 26.5
ATR0618G067 Amborella trichopoda HOM05D005945 ORTHO05D006749 3.0e-21 108.2 122 45.9
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 1.5e-20 105.9 313 29.4
Zm00001eb021170 Zea mays HOM05D005945 ORTHO05D006749 2.5e-20 105.1 325 28.6
Zm00001eb404680 Zea mays HOM05D005945 ORTHO05D006749 4.3e-20 104.4 275 29.5
Ah.11g043130 Amaranthus hybridus HOM05D005945 ORTHO05D006749 2.1e-19 102.1 342 29.2
Rhsim06G0034700 Rhododendron simsii HOM05D005945 ORTHO05D006749 8.1e-19 100.1 883 23.4
Actinidia22556 Actinidia chinensis HOM05D005945 ORTHO05D006749 2.4e-18 98.6 119 44.5
AUR62038825 Chenopodium quinoa HOM05D005945 ORTHO05D006749 9.0e-18 96.7 830 23.9
Sed0010063 Sechium edule HOM05D005945 ORTHO05D006749 9.0e-18 96.7 857 23.7
Lalb_Chr19g0125071 Lupinus albus HOM05D005945 ORTHO05D006749 1.2e-17 96.3 205 33.2
HPP92_021270 Vanilla planifolia HOM05D005945 ORTHO05D006749 1.5e-17 95.9 263 31.9
vmacro21631 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 2.0e-17 95.5 147 38.1
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 7.6e-17 93.6 131 38.9
AUR62043686 Chenopodium quinoa HOM05D005945 ORTHO05D006749 6.4e-16 90.5 893 24.7
EL10Ac1g01817 Beta vulgaris HOM05D005945 ORTHO05D006749 1.9e-15 89.0 893 23.3
Aqoxy4G01559 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 3.0e-13 81.6 289 30.4
CDE04G3738 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 1.4e-10 72.8 64 56.2
Mapoly0005s0138 Marchantia polymorpha HOM05D036654 ORTHO05D006749 7.6e-09 67.0 121 34.7
AagrBONN_evm.TU.Sc2ySwM_344.3266 Anthoceros agrestis HOM05D005945 ORTHO05D006749 5.5e-07 60.8 121 31.4
vmacro21630 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 7.9e-06 57.0 665 21.8


User provided reference genes

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