Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 3.9e-296 1020.8 531 100.0
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 1.7e-259 899.0 536 84.5
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 7.9e-257 890.2 531 85.5
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 1.7e-256 889.0 535 84.7
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 9.6e-255 883.2 531 84.7
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 1.1e-253 879.8 531 84.6
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 1.5e-252 875.9 531 84.2
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 2.0e-252 875.5 531 84.4
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 4.9e-251 870.9 531 84.2
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 5.1e-248 860.9 537 84.2
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 3.3e-247 858.2 531 83.2
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 1.6e-246 855.9 520 84.8
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 1.8e-224 782.7 543 75.7
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 1.6e-212 743.0 533 72.6
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 3.0e-192 675.6 411 83.5
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 9.2e-189 664.1 543 62.8
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 7.7e-188 661.0 537 63.3
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.7e-187 659.8 543 61.9
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 2.5e-186 656.0 545 62.2
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 4.3e-186 655.2 545 62.2
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 4.3e-186 655.2 545 62.2
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 4.3e-186 655.2 543 61.9
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 1.7e-182 643.3 545 60.9
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 1.1e-181 640.6 545 60.7
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 3.2e-181 639.0 542 61.6
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 3.2e-181 639.0 537 60.9
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 4.1e-181 638.6 542 62.9
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 5.9e-180 634.8 544 59.7
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 1.3e-179 633.6 542 62.5
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 3.0e-179 632.5 550 60.2
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 3.9e-179 632.1 538 61.2
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 1.1e-178 630.6 550 60.2
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 9.5e-178 627.5 539 60.9
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 1.6e-177 626.7 540 60.2
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 1.6e-177 626.7 543 59.3
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.1e-177 626.3 539 61.6
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 2.8e-177 625.9 539 60.5
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 4.7e-177 625.2 542 60.9
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 6.2e-177 624.8 548 59.1
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 8.0e-177 624.4 548 60.0
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 2.3e-176 622.9 543 60.0
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 6.8e-176 621.3 539 60.3
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 6.4e-174 614.8 543 59.3
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 5.4e-173 611.7 533 59.7
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 7.0e-173 611.3 520 60.0
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 9.2e-173 610.9 544 58.3
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 1.2e-172 610.5 540 58.0
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 2.0e-172 609.8 545 58.9
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 3.5e-172 609.0 541 58.2
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 6.0e-172 608.2 542 58.5
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 1.7e-171 606.7 540 58.0
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 2.3e-171 606.3 541 59.3
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 8.6e-171 604.4 540 57.0
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 1.1e-170 604.0 357 86.8
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 1.9e-170 603.2 545 58.7
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 4.3e-170 602.1 544 57.0
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 7.3e-170 601.3 549 58.1
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 9.5e-170 600.9 522 59.4
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 2.8e-169 599.4 546 57.7
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 4.7e-169 598.6 505 60.0
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 4.7e-169 598.6 540 57.4
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 8.1e-169 597.8 538 57.6
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 1.1e-168 597.4 521 59.5
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 1.4e-168 597.0 541 56.9
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 1.8e-168 596.7 549 56.8
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 3.1e-168 595.9 543 56.7
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 1.5e-167 593.6 540 58.7
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 1.5e-167 593.6 527 58.8
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 2.0e-167 593.2 544 57.2
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 2.6e-167 592.8 544 55.7
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 5.8e-167 591.7 528 59.5
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 9.8e-167 590.9 544 57.2
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 2.9e-166 589.3 534 59.2
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 8.3e-166 587.8 544 58.1
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 3.2e-165 585.9 532 56.6
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 7.1e-165 584.7 542 57.0
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.1e-162 577.4 539 56.8
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 4.3e-162 575.5 528 57.8
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 9.5e-162 574.3 453 70.0
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 8.1e-161 571.2 542 56.1
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 2.3e-160 569.7 542 55.7
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 1.5e-159 567.0 531 57.8
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 2.0e-159 566.6 534 55.2
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 3.4e-159 565.8 542 55.4
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.2e-157 557.8 522 56.7
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.2e-157 557.8 522 56.7
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.5e-156 555.8 522 56.7
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.7e-155 553.5 522 56.3
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.9e-155 552.4 522 56.5
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 7.3e-154 548.1 547 51.9
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 1.6e-153 547.0 530 53.8
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 6.2e-153 545.0 544 52.8
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.6e-151 539.7 523 55.4
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.7e-150 537.0 515 55.0
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 4.9e-150 535.4 542 52.6
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 3.2e-149 532.7 533 54.6
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 5.1e-147 525.4 531 52.5
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 6.6e-147 525.0 544 51.8
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 1.5e-146 523.9 507 54.2
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 7.6e-143 511.5 493 52.7
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 3.9e-139 499.2 414 60.6
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 5.8e-135 485.3 550 47.5
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 5.5e-133 478.8 550 47.5
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 1.8e-128 463.8 423 56.5
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 4.9e-126 455.7 417 56.4
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 3.3e-122 443.0 499 53.7
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 9.6e-122 441.4 499 53.7
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 4.5e-119 432.6 500 47.0
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 1.2e-116 424.5 540 45.7
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 3.0e-107 393.3 494 45.5
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 1.1e-106 391.3 569 38.3
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.2e-101 373.2 418 51.2
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 3.6e-100 369.8 322 59.9
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 6.1e-100 369.0 538 42.9
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 9.1e-96 355.1 500 39.8
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 1.8e-91 340.9 490 40.6
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 8.8e-91 338.6 355 51.3
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 4.5e-87 326.2 321 56.7
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 1.7e-86 324.3 514 37.2
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 4.2e-85 319.7 475 38.9
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 2.7e-84 317.0 423 45.2
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 6.8e-75 285.8 263 55.9
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 3.7e-73 280.0 347 45.8
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 2.3e-59 234.2 260 48.5
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 1.3e-54 218.4 203 57.1
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 6.6e-54 216.1 210 54.8
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 6.2e-52 209.5 167 59.9
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 3.1e-51 207.2 354 41.8
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 1.1e-43 182.2 113 82.3
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 4.4e-42 176.8 115 79.1
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 2.0e-34 151.4 88 89.8
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 3.2e-32 144.1 92 78.3
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 1.3e-30 138.7 543 27.4
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 1.3e-30 138.7 126 57.1
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 1.5e-29 135.2 203 42.4
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 1.9e-29 134.8 575 24.5
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 2.5e-29 134.4 116 61.2
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 5.3e-27 126.7 96 68.8
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.0e-26 124.8 108 58.3
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 1.4e-24 118.6 440 28.9
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.2e-23 115.5 108 56.5
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 1.8e-22 111.7 505 24.8
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 2.5e-21 107.8 100 55.0
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 4.3e-21 107.1 125 55.2
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 4.8e-20 103.6 91 59.3
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 1.6e-15 88.6 88 64.8
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 2.7e-15 87.8 160 36.9
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 1.7e-09 68.6 564 22.2
BcaC07g40045 Brassica carinata HOM05D001925 ORTHO05D005701 8.4e-09 66.2 58 65.5


User provided reference genes

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