Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 6.3e-126 454.1 231 100.0
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 3.4e-124 448.4 231 98.3
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 3.4e-124 448.4 231 98.3
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 3.4e-124 448.4 231 98.3
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 5.9e-124 447.6 231 98.3
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 1.3e-123 446.4 231 98.3
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 3.8e-123 444.9 231 97.8
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 3.8e-123 444.9 231 97.8
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 8.5e-123 443.7 231 97.4
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 8.5e-123 443.7 231 97.4
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 8.5e-123 443.7 231 97.4
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 8.5e-123 443.7 231 97.4
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 1.1e-122 443.4 231 97.4
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 2.5e-122 442.2 231 95.7
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 2.5e-122 442.2 231 96.1
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 3.2e-122 441.8 231 95.7
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 2.1e-121 439.1 231 96.5
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.1e-119 433.3 231 93.5
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 4.3e-119 431.4 231 93.1
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 7.4e-119 430.6 231 93.1
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 9.7e-119 430.3 231 92.6
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 9.7e-119 430.3 231 92.6
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 1.3e-118 429.9 231 93.1
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 3.7e-118 428.3 231 92.2
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 1.8e-117 426.0 231 91.8
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 1.8e-117 426.0 231 91.8
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 1.8e-117 426.0 231 91.8
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.2e-116 423.3 231 91.3
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.7e-115 419.5 251 86.5
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 1.7e-115 419.5 231 90.0
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 8.5e-115 417.2 231 89.6
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 9.4e-114 413.7 231 90.0
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 2.6e-108 395.6 231 83.1
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 3.4e-108 395.2 231 83.5
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 5.9e-108 394.4 231 83.1
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 7.7e-108 394.0 231 82.7
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 7.7e-108 394.0 231 83.5
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 1.7e-107 392.9 231 82.7
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 2.2e-107 392.5 231 82.7
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 2.2e-107 392.5 231 82.3
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 2.2e-107 392.5 231 81.8
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 2.9e-107 392.1 231 82.7
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 2.9e-107 392.1 231 83.1
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 3.8e-107 391.7 231 82.3
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 3.8e-107 391.7 231 82.3
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 3.8e-107 391.7 231 83.1
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 3.8e-107 391.7 231 81.8
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 5.0e-107 391.3 231 82.7
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 5.0e-107 391.3 231 81.8
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 6.5e-107 391.0 231 81.4
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 8.5e-107 390.6 231 81.8
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 8.5e-107 390.6 231 82.7
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 1.1e-106 390.2 231 82.3
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.1e-106 390.2 231 81.4
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.1e-106 390.2 231 81.8
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 1.4e-106 389.8 231 82.3
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.9e-106 389.4 231 81.8
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 1.9e-106 389.4 231 82.3
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 2.5e-106 389.0 231 81.8
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 3.2e-106 388.7 231 81.8
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 4.2e-106 388.3 231 81.4
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 4.2e-106 388.3 231 81.4
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 4.2e-106 388.3 231 82.7
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 5.5e-106 387.9 231 81.4
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 7.2e-106 387.5 231 81.0
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 7.2e-106 387.5 231 81.0
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 9.4e-106 387.1 231 81.8
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 9.4e-106 387.1 231 82.3
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 9.4e-106 387.1 230 81.7
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 1.2e-105 386.7 231 81.8
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 1.2e-105 386.7 231 81.0
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 1.2e-105 386.7 231 81.4
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 1.2e-105 386.7 231 82.7
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 1.6e-105 386.3 231 82.3
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 1.6e-105 386.3 231 82.3
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 2.7e-105 385.6 231 81.0
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 2.7e-105 385.6 231 81.4
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 2.7e-105 385.6 231 81.4
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 2.7e-105 385.6 231 81.8
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 2.7e-105 385.6 231 81.8
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 2.7e-105 385.6 231 81.0
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 3.6e-105 385.2 231 81.0
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 3.6e-105 385.2 231 82.3
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 3.6e-105 385.2 231 81.4
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 4.7e-105 384.8 231 81.4
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 6.1e-105 384.4 231 83.1
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 1.0e-104 383.6 231 81.0
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 1.0e-104 383.6 231 81.0
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 1.4e-104 383.3 231 79.7
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.8e-104 382.9 231 81.0
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 2.3e-104 382.5 231 81.0
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 3.0e-104 382.1 231 82.3
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 5.2e-104 381.3 232 81.5
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 6.7e-104 380.9 231 81.8
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 6.7e-104 380.9 231 80.1
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 6.7e-104 380.9 231 80.1
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 1.5e-103 379.8 231 80.5
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.0e-103 379.4 248 75.8
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 2.6e-103 379.0 231 80.1
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 2.6e-103 379.0 231 80.1
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 5.7e-103 377.9 231 78.8
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 5.7e-103 377.9 231 78.8
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 5.7e-103 377.9 231 79.2
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 7.4e-103 377.5 231 80.1
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.3e-102 376.7 231 80.5
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 6.3e-102 374.4 231 78.8
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 8.2e-102 374.0 231 78.8
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 1.8e-101 372.9 227 81.9
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.8e-101 372.9 231 78.4
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 2.4e-101 372.5 275 69.8
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 7.0e-101 370.9 231 79.7
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.6e-100 369.0 232 79.7
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 5.9e-100 367.9 213 84.0
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 1.0e-99 367.1 211 85.8
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 1.7e-99 366.3 231 77.5
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.9e-98 362.8 231 78.4
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 1.9e-98 362.8 211 84.4
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 2.5e-98 362.5 223 79.4
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 7.2e-98 360.9 211 83.9
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.2e-97 360.1 213 83.1
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 8.0e-97 357.5 213 80.8
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 8.8e-96 354.0 231 74.0
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 1.5e-95 353.2 213 81.2
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 2.0e-95 352.8 231 74.0
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 2.6e-95 352.4 231 72.7
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 5.7e-95 351.3 221 77.4
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 1.7e-94 349.7 231 73.6
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 2.2e-94 349.4 229 76.4
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 2.8e-94 349.0 231 72.7
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 4.8e-94 348.2 243 73.3
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 8.2e-94 347.4 211 81.0
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 7.0e-93 344.4 231 75.8
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 8.5e-91 337.4 231 70.6
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 3.0e-88 328.9 231 69.3
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 5.2e-88 328.2 249 68.3
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 4.8e-86 321.6 231 69.7
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 6.3e-86 321.2 241 66.4
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 1.8e-85 319.7 217 76.0
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 2.3e-83 312.8 231 68.8
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 6.5e-83 311.2 231 70.6
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 7.2e-82 307.8 215 74.0
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 1.2e-81 307.0 260 63.8
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.0e-80 302.4 212 71.7
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 2.0e-79 299.7 238 63.4
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 1.7e-78 296.6 196 73.0
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 3.3e-74 282.3 213 68.5
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 4.7e-73 278.5 212 66.5
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 8.9e-72 274.2 242 62.0
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 1.9e-69 266.5 157 83.4
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 1.2e-68 263.8 151 84.8
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 1.7e-67 260.0 136 96.3
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 6.6e-67 258.1 241 56.0
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 6.6e-67 258.1 230 57.4
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 9.8e-63 244.2 246 53.3
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 1.3e-59 233.8 137 83.2
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 6.6e-59 231.5 171 70.2
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 1.1e-58 230.7 290 45.2
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 2.6e-55 219.5 267 49.1
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 1.9e-50 203.4 150 66.0
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 2.6e-47 193.0 140 67.9
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 9.2e-45 184.5 157 66.2
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 1.0e-43 181.0 265 39.2
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.9e-42 176.8 158 58.2
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 1.9e-42 176.8 107 80.4
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 2.5e-42 176.4 194 50.0
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 3.8e-38 162.5 99 78.8
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 1.8e-27 127.1 75 81.3
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.1e-26 124.4 104 60.6
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 5.8e-23 112.1 66 80.3
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 2.7e-20 103.2 75 65.3
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 2.8e-17 93.2 61 70.5
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 8.2e-17 91.7 54 77.8
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 1.1e-10 71.2 123 39.0
Ah.04g151350 Amaranthus hybridus HOM05D002173 ORTHO05D002189 3.8e-06 56.2 36 72.2


User provided reference genes

Program Settings