Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g05100 Schrenkiella parvula HOM05D002914 ORTHO05D003196 6.4e-64 247.3 127 100.0
BcaB02g07599 Brassica carinata HOM05D002914 ORTHO05D003196 3.4e-49 198.4 126 81.0
AL5G39080 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 1.9e-44 182.6 97 90.7
A04p03090 Brassica napus HOM05D002914 ORTHO05D003196 1.9e-44 182.6 112 83.0
BraA04t16032Z Brassica rapa HOM05D002914 ORTHO05D003196 1.9e-44 182.6 112 83.0
C08p33030 Brassica napus HOM05D002914 ORTHO05D003196 3.3e-44 181.8 98 87.8
BcaC08g44849 Brassica carinata HOM05D002914 ORTHO05D003196 7.3e-44 180.6 126 74.6
Thhalv10006376m.g Eutrema salsugineum HOM05D002914 ORTHO05D003196 7.3e-44 180.6 127 75.6
Carub.0005s2434 Capsella rubella HOM05D002914 ORTHO05D003196 3.6e-43 178.3 98 89.8
BolC8t50903H Brassica oleracea HOM05D002914 ORTHO05D003196 6.2e-43 177.6 130 71.5
AT3G57500 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 8.1e-43 177.2 125 76.8
A09p50360 Brassica napus HOM05D002914 ORTHO05D003196 8.1e-43 177.2 130 71.5
BraA09t40488Z Brassica rapa HOM05D002914 ORTHO05D003196 8.1e-43 177.2 130 71.5
BcaB02g08314 Brassica carinata HOM05D002914 ORTHO05D003196 5.3e-42 174.5 127 71.7
CARHR167710 Cardamine hirsuta HOM05D002914 ORTHO05D003196 2.2e-40 169.1 95 88.4
BcaC07g40375 Brassica carinata HOM05D002914 ORTHO05D003196 3.8e-40 168.3 130 70.8
A07p23450 Brassica napus HOM05D002914 ORTHO05D003196 2.4e-39 165.6 128 69.5
BcaC02g09941 Brassica carinata HOM05D002914 ORTHO05D003196 3.2e-39 165.2 114 77.2
C04p34950 Brassica napus HOM05D002914 ORTHO05D003196 2.7e-38 162.2 114 76.3
BolC4t25049H Brassica oleracea HOM05D002914 ORTHO05D003196 2.7e-38 162.2 114 76.3
Dinv18053 Davidia involucrata HOM05D002914 ORTHO05D003196 8.4e-24 114.0 116 57.8
TAR623G0040 Trochodendron aralioides HOM05D002914 ORTHO05D003196 2.5e-23 112.5 122 54.1
Manes.09G023600 Manihot esculenta HOM05D002914 ORTHO05D003196 1.6e-22 109.8 98 60.2
Thecc.05G158000 Theobroma cacao HOM05D002914 ORTHO05D003196 2.1e-22 109.4 98 62.2
Duzib093G1261 Durio zibethinus HOM05D002914 ORTHO05D003196 3.5e-22 108.6 98 59.2
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 4.6e-22 108.2 119 55.5
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 4.6e-22 108.2 106 56.6
RcHm_v2.0_Chr3g0481701 Rosa chinensis HOM05D002914 ORTHO05D003196 6.0e-22 107.8 86 66.3
Gohir.D09G120100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 3.0e-21 105.5 98 57.1
Aqoxy2G00187 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 3.9e-21 105.1 84 64.3
Gohir.A09G123100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 3.9e-21 105.1 98 57.1
Gorai.006G137500 Gossypium raimondii HOM05D002914 ORTHO05D003196 3.9e-21 105.1 98 57.1
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 5.1e-21 104.8 81 64.2
Ah.04g151670 Amaranthus hybridus HOM05D002914 ORTHO05D003196 6.7e-21 104.4 77 63.6
TWI74G1608 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 8.7e-21 104.0 68 69.1
Nn2g15303 Nelumbo nucifera HOM05D002914 ORTHO05D003196 1.5e-20 103.2 115 51.3
EL10Ac3g07073 Beta vulgaris HOM05D002914 ORTHO05D003196 1.9e-20 102.8 77 63.6
Hma1.2p1_1847F.1_g305210 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 2.5e-20 102.4 86 61.6
Medtr7g091830 Medicago truncatula HOM05D002914 ORTHO05D003196 2.5e-20 102.4 96 55.2
Cpa.g.sc92.38 Carica papaya HOM05D002914 ORTHO05D003196 3.3e-20 102.1 97 57.7
Nn7g36239 Nelumbo nucifera HOM05D002914 ORTHO05D003196 3.3e-20 102.1 103 58.3
CiPaw.09G037100 Carya illinoinensis HOM05D002914 ORTHO05D003196 4.3e-20 101.7 92 59.8
Peaxi162Scf00493g00035 Petunia axillaris HOM05D002914 ORTHO05D003196 5.7e-20 101.3 66 74.2
Phvul.001G135000 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 5.7e-20 101.3 92 59.8
THA.LOC104802149 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 5.7e-20 101.3 82 72.0
COL.COLO4_28237 Corchorus olitorius HOM05D002914 ORTHO05D003196 7.4e-20 100.9 99 54.5
Sopen04g007610 Solanum pennellii HOM05D002914 ORTHO05D003196 1.3e-19 100.1 65 69.2
Oeu000823.1 Olea europaea HOM05D002914 ORTHO05D003196 1.6e-19 99.8 101 53.5
Solyc04g015540.1 Solanum lycopersicum HOM05D002914 ORTHO05D003196 1.6e-19 99.8 70 65.7
TPR.G27766 Trifolium pratense HOM05D002914 ORTHO05D003196 1.6e-19 99.8 88 54.5
Atru.chr1.1072 Acer truncatum HOM05D002914 ORTHO05D003196 2.2e-19 99.4 96 58.3
Lj1g0015891 Lotus japonicus HOM05D002914 ORTHO05D003196 2.2e-19 99.4 108 51.9
Os03g0696150 Oryza sativa ssp. japonica HOM05D002914 ORTHO05D003196 2.8e-19 99.0 84 57.1
VMungo1383G1568 Vigna mungo HOM05D002914 ORTHO05D003196 2.8e-19 99.0 73 65.8
CANSAT80G1635 Cannabis sativa HOM05D002914 ORTHO05D003196 3.7e-19 98.6 98 55.1
Glyma.19G140500 Glycine max HOM05D002914 ORTHO05D003196 3.7e-19 98.6 70 67.1
Potri.006G052500 Populus trichocarpa HOM05D002914 ORTHO05D003196 3.7e-19 98.6 111 52.3
Psat3g072240 Pisum sativum HOM05D002914 ORTHO05D003196 4.8e-19 98.2 87 54.0
MD14G1070500 Malus domestica HOM05D002914 ORTHO05D003196 6.3e-19 97.8 119 54.6
Nitab4.5_0005892g0010 Nicotiana tabacum HOM05D002914 ORTHO05D003196 8.2e-19 97.4 63 73.0
PGSC0003DMG400027270 Solanum tuberosum HOM05D002914 ORTHO05D003196 8.2e-19 97.4 66 66.7
Cfa016832 Carpinus fangiana HOM05D002914 ORTHO05D003196 1.1e-18 97.1 84 60.7
Ciclev10006230m.g Citrus clementina HOM05D002914 ORTHO05D003196 1.4e-18 96.7 98 54.1
Duzib128G0409 Durio zibethinus HOM05D002914 ORTHO05D003196 5.3e-18 94.7 117 49.6
Sc13g0001830 Simmondsia chinensis HOM05D002914 ORTHO05D003196 1.2e-17 93.6 98 57.1
ATR0332G006 Amborella trichopoda HOM05D002914 ORTHO05D003196 1.5e-17 93.2 55 72.7
Ca_08467_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.5e-17 93.2 74 64.9
Manes.08G049900 Manihot esculenta HOM05D002914 ORTHO05D003196 1.5e-17 93.2 71 62.0
Lalb_Chr20g0110761 Lupinus albus HOM05D002914 ORTHO05D003196 4.5e-17 91.7 90 54.4
FvH4_6g23590 Fragaria vesca HOM05D002914 ORTHO05D003196 1.0e-16 90.5 106 50.0
Migut.K00083 Erythranthe guttata HOM05D002914 ORTHO05D003196 1.7e-16 89.7 74 63.5
Lsat_1_v5_gn_9_28661 Lactuca sativa HOM05D002914 ORTHO05D003196 2.2e-16 89.4 88 56.8
FAN09G0984 Fragaria x ananassa HOM05D002914 ORTHO05D003196 2.9e-16 89.0 106 50.0
Lsat_1_v5_gn_5_161660 Lactuca sativa HOM05D002914 ORTHO05D003196 2.9e-16 89.0 69 58.0
MBI02_g05666_MAGBIO Magnolia biondii HOM05D002914 ORTHO05D003196 1.1e-15 87.0 89 57.3
QL07p000101 Quercus lobata HOM05D002914 ORTHO05D003196 1.1e-15 87.0 90 54.4
HanXRQChr10g0300121 Helianthus annuus HOM05D002914 ORTHO05D003196 2.5e-15 85.9 95 52.6
Gohir.A01G132111 Gossypium hirsutum HOM05D002914 ORTHO05D003196 9.4e-15 84.0 85 49.4
Actinidia17240 Actinidia chinensis HOM05D002914 ORTHO05D003196 1.2e-14 83.6 117 44.4
Gorai.002G147700 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.2e-14 83.6 85 49.4
Gohir.D01G121050 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.6e-14 81.6 85 48.2
ClCG04G003270 Citrullus lanatus HOM05D002914 ORTHO05D003196 1.4e-13 80.1 79 58.2
DCAR_020485 Daucus carota HOM05D002914 ORTHO05D003196 5.1e-13 78.2 108 44.4
Sabra06G0036900 Salix brachista HOM05D002914 ORTHO05D003196 1.9e-12 76.3 72 56.9
HPP92_023573 Vanilla planifolia HOM05D002914 ORTHO05D003196 3.3e-12 75.5 83 45.8
MBI04_g44434_MAGBIO Magnolia biondii HOM05D002914 ORTHO05D003196 4.3e-12 75.1 38 78.9
ECA247G2219 Erigeron canadensis HOM05D000031 ORTHO05D000003 1.7e-11 73.2 100 43.0
SEGI_00607 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 1.7e-11 73.2 47 66.0
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 2.8e-11 72.4 106 42.5
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 3.7e-11 72.0 92 41.3
arahy.Tifrunner.gnm1.ann1.TRJ4SS Arachis hypogaea HOM05D002914 ORTHO05D003196 4.8e-11 71.6 40 77.5
AUR62024432 Chenopodium quinoa HOM05D002914 ORTHO05D003196 6.3e-11 71.2 67 53.7
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 1.8e-10 69.7 114 40.4
CsaV3_4G011800 Cucumis sativus L. HOM05D002914 ORTHO05D003196 3.1e-10 68.9 109 41.3
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 4.1e-10 68.6 75 45.3
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 5.3e-10 68.2 92 43.5
MELO3C023115.2 Cucumis melo HOM05D002914 ORTHO05D003196 5.3e-10 68.2 79 51.9
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 9.1e-10 67.4 63 44.4
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 1.5e-09 66.6 67 49.3
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 1.5e-09 66.6 110 37.3
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 2.0e-09 66.2 74 45.9
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 2.0e-09 66.2 74 45.9
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 2.0e-09 66.2 77 41.6
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 2.0e-09 66.2 107 37.4
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 2.0e-09 66.2 88 42.0
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 2.6e-09 65.9 67 49.3
Zm00001eb216960 Zea mays HOM05D002914 ORTHO05D003196 4.5e-09 65.1 78 44.9
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 5.9e-09 64.7 98 38.8
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 7.7e-09 64.3 52 51.9
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 1.0e-08 63.9 89 42.7
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 1.0e-08 63.9 110 39.1
Atru.ctg24.30 Acer truncatum HOM05D002914 ORTHO05D003196 1.3e-08 63.5 72 47.2
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 1.7e-08 63.2 70 48.6
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 1.7e-08 63.2 78 37.2
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 2.9e-08 62.4 108 32.4
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 3.8e-08 62.0 86 39.5
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 3.8e-08 62.0 100 36.0
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 5.0e-08 61.6 64 43.8
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 5.0e-08 61.6 96 40.6
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 6.5e-08 61.2 85 38.8
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 6.5e-08 61.2 76 44.7
Migut.J01766 Erythranthe guttata HOM05D002914 ORTHO05D003196 8.5e-08 60.8 107 36.4
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 8.5e-08 60.8 87 37.9
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 8.5e-08 60.8 87 37.9
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 1.1e-07 60.5 83 37.3
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.4e-07 60.1 71 47.9
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 1.9e-07 59.7 102 36.3
Gohir.D13G036200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.9e-07 59.7 71 40.8
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 2.5e-07 59.3 92 39.1
CANSAT25G0897 Cannabis sativa HOM05D002914 ORTHO05D003196 2.5e-07 59.3 96 37.5
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 2.5e-07 59.3 100 38.0
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 3.2e-07 58.9 86 38.4
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 3.2e-07 58.9 88 37.5
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.2e-07 58.5 87 35.6
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.2e-07 58.5 52 51.9
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 4.2e-07 58.5 52 51.9
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 4.2e-07 58.5 109 37.6
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 5.5e-07 58.2 118 38.1
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 5.5e-07 58.2 64 42.2
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 5.5e-07 58.2 107 34.6
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 5.5e-07 58.2 52 48.1
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 7.2e-07 57.8 103 35.9
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 7.2e-07 57.8 114 32.5
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 7.2e-07 57.8 63 42.9
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 7.2e-07 57.8 75 40.0
arahy.Tifrunner.gnm1.ann1.2E3RSG Arachis hypogaea HOM05D002914 ORTHO05D003196 9.4e-07 57.4 77 39.0
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 9.4e-07 57.4 104 36.5
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 9.4e-07 57.4 88 38.6
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.2e-06 57.0 82 37.8
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 1.2e-06 57.0 63 44.4
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 1.6e-06 56.6 94 37.2
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 1.6e-06 56.6 75 41.3
Cpa.g.sc62.45 Carica papaya HOM05D002914 ORTHO05D003196 2.1e-06 56.2 74 39.2
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 2.1e-06 56.2 111 36.9
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.1e-06 56.2 122 32.0
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 2.1e-06 56.2 107 33.6
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 3.6e-06 55.5 109 39.4
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 3.6e-06 55.5 76 38.2
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 3.6e-06 55.5 73 43.8
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 3.6e-06 55.5 113 32.7
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 4.7e-06 55.1 98 34.7
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 4.7e-06 55.1 36 61.1
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 4.7e-06 55.1 91 36.3
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 6.1e-06 54.7 95 32.6
EL10Ac9g21822 Beta vulgaris HOM05D002914 ORTHO05D003196 6.1e-06 54.7 61 42.6
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 6.1e-06 54.7 83 38.6
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 7.9e-06 54.3 85 36.5
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 7.9e-06 54.3 93 34.4
HPP92_007074 Vanilla planifolia HOM05D002914 ORTHO05D003196 7.9e-06 54.3 70 38.6


User provided reference genes

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