Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 7.9e-110 401.0 291 100.0
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 9.1e-90 334.3 295 86.8
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 9.1e-90 334.3 295 86.8
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 9.1e-90 334.3 295 86.8
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 5.5e-87 325.1 294 87.1
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 2.0e-84 316.6 295 87.5
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 2.2e-83 313.2 299 84.6
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.9e-79 300.1 299 82.3
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.9e-79 300.1 300 84.7
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.2e-76 290.8 293 80.9
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 9.8e-76 287.7 300 82.7
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 4.5e-73 278.9 301 79.4
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 1.0e-56 224.6 294 70.4
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 3.7e-43 179.5 307 63.5
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.7e-40 170.6 294 65.3
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 1.8e-37 160.6 305 61.0
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 4.0e-37 159.5 301 61.8
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 3.8e-35 152.9 298 60.1
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 6.4e-35 152.1 302 59.3
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 9.3e-34 148.3 298 58.7
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 2.1e-33 147.1 303 62.0
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 2.7e-33 146.7 298 58.4
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 6.0e-33 145.6 298 50.7
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 6.0e-33 145.6 298 50.7
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.7e-32 144.1 294 50.3
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.1e-29 134.8 296 60.1
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 1.4e-29 134.4 261 60.9
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 2.0e-28 130.6 292 47.9
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 2.0e-28 130.6 281 55.9
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 4.4e-28 129.4 283 59.7
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 1.3e-27 127.9 290 54.5
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 1.7e-27 127.5 288 55.9
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 2.2e-27 127.1 296 59.1
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 2.9e-27 126.7 289 55.4
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 3.8e-27 126.3 299 55.2
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 3.8e-27 126.3 290 54.5
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 6.4e-27 125.6 275 55.3
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 1.1e-26 124.8 265 55.8
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.9e-26 124.0 290 57.6
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 2.4e-26 123.6 286 58.7
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 3.2e-26 123.2 266 58.3
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 4.2e-26 122.9 272 46.0
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 9.3e-26 121.7 280 60.7
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 1.6e-25 120.9 273 51.6
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 2.1e-25 120.6 281 57.3
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 2.7e-25 120.2 280 57.9
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 3.5e-25 119.8 289 57.4
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 4.6e-25 119.4 279 55.9
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 4.6e-25 119.4 290 53.4
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 6.0e-25 119.0 267 61.0
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.0e-24 118.2 300 53.0
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 1.0e-24 118.2 179 46.9
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.3e-24 117.9 281 55.2
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.7e-24 117.5 270 57.4
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 2.3e-24 117.1 271 56.1
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 3.9e-24 116.3 286 57.0
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 3.9e-24 116.3 286 58.4
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 3.9e-24 116.3 274 55.1
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 5.1e-24 115.9 286 52.8
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 6.6e-24 115.5 293 56.3
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 6.6e-24 115.5 274 58.0
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 8.7e-24 115.2 269 56.9
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 8.7e-24 115.2 269 56.9
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 1.9e-23 114.0 265 57.7
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 1.9e-23 114.0 265 57.7
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 2.5e-23 113.6 281 55.9
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 2.5e-23 113.6 302 53.0
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.5e-23 113.6 274 56.6
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 2.5e-23 113.6 203 41.4
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 3.3e-23 113.2 280 56.4
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 5.6e-23 112.5 194 43.3
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 5.6e-23 112.5 259 54.4
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 9.6e-23 111.7 296 51.0
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 2.1e-22 110.5 295 53.2
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.1e-22 110.5 295 53.2
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 2.1e-22 110.5 265 56.6
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.8e-22 110.2 301 52.2
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.8e-22 110.2 301 52.2
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 2.8e-22 110.2 269 59.9
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 3.6e-22 109.8 284 54.6
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 4.8e-22 109.4 279 51.6
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 8.1e-22 108.6 268 57.5
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 8.1e-22 108.6 301 51.8
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 1.1e-21 108.2 296 56.8
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 1.1e-21 108.2 286 55.6
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.1e-21 108.2 269 55.0
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 1.8e-21 107.5 264 55.7
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 2.4e-21 107.1 231 57.6
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 2.4e-21 107.1 282 56.7
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 3.1e-21 106.7 289 51.6
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 4.0e-21 106.3 229 62.9
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 4.0e-21 106.3 281 54.4
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 5.3e-21 105.9 276 54.7
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 6.9e-21 105.5 297 50.2
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 9.0e-21 105.1 269 54.6
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 9.0e-21 105.1 260 57.7
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 1.2e-20 104.8 284 55.6
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.5e-20 104.4 274 54.7
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 2.0e-20 104.0 290 52.1
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 2.6e-20 103.6 187 41.7
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 2.6e-20 103.6 189 42.3
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 3.4e-20 103.2 292 53.1
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 7.6e-20 102.1 270 43.0
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 7.6e-20 102.1 287 53.0
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 9.9e-20 101.7 203 39.4
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 9.9e-20 101.7 273 53.1
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 1.3e-19 101.3 272 56.6
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 2.9e-19 100.1 312 47.1
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 4.9e-19 99.4 278 57.2
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 4.9e-19 99.4 261 55.2
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 6.4e-19 99.0 288 48.6
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 8.4e-19 98.6 260 56.5
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 1.1e-18 98.2 307 49.8
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 2.4e-18 97.1 275 50.9
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.4e-18 97.1 264 51.9
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 2.4e-18 97.1 294 53.1
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 3.2e-18 96.7 207 40.1
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 7.1e-18 95.5 296 50.7
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.6e-17 94.4 271 52.0
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 6.0e-17 92.4 196 39.8
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 6.0e-17 92.4 177 40.7
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 7.9e-17 92.0 279 48.7
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 3.0e-16 90.1 218 34.9
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 3.9e-16 89.7 203 40.4
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 8.7e-16 88.6 287 50.9
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 8.7e-16 88.6 275 41.1
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.5e-15 87.8 288 49.3
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 2.5e-15 87.0 305 49.8
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 3.3e-15 86.7 177 37.9
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 4.3e-15 86.3 277 52.7
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 5.6e-15 85.9 269 48.0
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 5.6e-15 85.9 154 43.5
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 7.4e-15 85.5 271 53.1
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 7.4e-15 85.5 222 31.5
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 2.8e-14 83.6 286 50.3
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 2.8e-14 83.6 276 52.5
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 1.1e-13 81.6 251 55.0
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 1.4e-13 81.3 147 42.2
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 1.8e-13 80.9 259 56.4
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.4e-13 80.5 138 44.2
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 2.4e-13 80.5 190 36.8
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 3.1e-13 80.1 277 50.9
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 9.0e-13 78.6 263 39.2
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 1.2e-12 78.2 213 34.3
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 4.5e-12 76.3 206 37.4
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 4.5e-12 76.3 274 50.0
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 2.9e-11 73.6 254 53.1
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 3.8e-11 73.2 259 42.5
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 4.9e-11 72.8 257 48.2
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 1.9e-10 70.9 133 38.3
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 3.2e-10 70.1 162 69.8
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 4.2e-10 69.7 289 47.4
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 9.3e-10 68.6 303 47.2
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 1.9e-07 60.8 227 36.6
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 2.5e-07 60.5 223 29.6
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 3.3e-07 60.1 201 31.8
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 5.7e-07 59.3 284 33.1
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 7.4e-07 58.9 304 44.4
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 3.7e-06 56.6 39 66.7
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 3.7e-06 56.6 63 55.6


User provided reference genes

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