Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 2.0e-83 312.4 160 100.0
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 5.9e-83 310.8 160 99.4
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.7e-77 292.7 160 91.2
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 2.2e-77 292.4 160 90.0
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 4.9e-77 291.2 160 89.4
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 6.3e-77 290.8 160 88.8
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.1e-76 290.0 160 90.0
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 2.4e-76 288.9 160 88.8
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 3.1e-76 288.5 160 87.5
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 1.6e-75 286.2 160 87.5
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 4.5e-75 284.6 161 88.2
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 4.5e-75 284.6 161 88.2
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 4.5e-75 284.6 161 88.2
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 4.5e-75 284.6 161 88.2
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 5.9e-75 284.3 161 88.2
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.3e-74 283.1 161 87.6
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 2.9e-74 282.0 161 87.6
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 2.9e-74 282.0 161 87.6
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 2.9e-74 282.0 161 87.6
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 6.6e-74 280.8 160 86.9
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 5.6e-73 277.7 158 87.3
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 1.2e-72 276.6 158 86.7
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 2.4e-68 262.3 154 81.8
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 4.1e-68 261.5 154 81.8
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 2.7e-67 258.8 160 77.5
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.7e-67 258.8 160 77.5
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.7e-67 258.8 160 77.5
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.7e-67 258.8 160 77.5
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.7e-67 258.8 160 77.5
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.7e-67 258.8 160 77.5
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 3.5e-67 258.5 154 79.2
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 6.0e-67 257.7 160 76.9
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 3.0e-66 255.4 154 79.2
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 3.0e-66 255.4 158 75.9
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 3.9e-66 255.0 160 75.6
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 6.6e-66 254.2 160 76.9
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 6.6e-66 254.2 158 76.6
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 8.6e-66 253.8 160 75.0
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 1.1e-65 253.4 160 75.6
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.1e-65 253.4 158 76.6
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 1.1e-65 253.4 160 75.0
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.1e-65 253.4 154 78.6
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 1.5e-65 253.1 160 76.2
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 1.5e-65 253.1 160 76.2
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 1.5e-65 253.1 158 75.9
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 2.5e-65 252.3 157 78.3
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 2.5e-65 252.3 160 73.8
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.3e-65 251.9 154 77.3
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 7.3e-65 250.8 160 74.4
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 7.3e-65 250.8 160 76.9
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 9.5e-65 250.4 160 76.2
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.2e-64 250.0 154 77.3
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.6e-64 249.6 157 76.4
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 2.8e-64 248.8 160 72.5
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 3.6e-64 248.4 155 76.1
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 4.7e-64 248.1 154 76.6
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 4.7e-64 248.1 153 77.1
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 4.7e-64 248.1 153 77.1
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 4.7e-64 248.1 157 76.4
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 4.7e-64 248.1 154 78.6
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 6.2e-64 247.7 160 72.5
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 1.1e-63 246.9 154 76.0
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 1.1e-63 246.9 159 74.2
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 1.1e-63 246.9 155 76.8
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 1.8e-63 246.1 155 74.8
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 1.8e-63 246.1 158 76.6
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.8e-63 246.1 160 75.6
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 1.8e-63 246.1 155 76.1
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 2.3e-63 245.7 154 77.9
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 3.1e-63 245.4 160 75.6
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 3.1e-63 245.4 157 75.2
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 3.1e-63 245.4 143 85.3
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 4.0e-63 245.0 160 74.4
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 4.0e-63 245.0 158 74.7
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 4.0e-63 245.0 154 77.9
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 4.0e-63 245.0 160 73.1
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 5.2e-63 244.6 154 77.3
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 5.2e-63 244.6 154 77.3
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 6.8e-63 244.2 154 76.6
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 6.8e-63 244.2 158 72.8
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 6.8e-63 244.2 157 74.5
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 8.9e-63 243.8 158 74.1
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.2e-62 243.4 154 76.6
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 1.2e-62 243.4 160 73.1
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 1.5e-62 243.0 157 73.9
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 7.5e-62 240.7 157 73.2
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 2.9e-61 238.8 154 75.3
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 2.9e-61 238.8 160 70.0
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 1.1e-60 236.9 155 73.5
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.4e-60 236.5 157 73.2
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 1.9e-60 236.1 154 72.7
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 5.4e-60 234.6 138 81.2
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 5.4e-60 234.6 160 71.9
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 7.0e-60 234.2 157 72.0
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 9.2e-60 233.8 154 74.0
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 1.2e-59 233.4 154 75.3
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 2.7e-59 232.3 160 71.2
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 3.5e-59 231.9 160 71.9
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 4.6e-59 231.5 157 72.0
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 1.0e-58 230.3 159 71.7
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 1.0e-58 230.3 159 71.7
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 1.0e-58 230.3 155 69.7
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 1.7e-58 229.6 160 70.0
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 3.0e-58 228.8 160 69.4
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 5.1e-58 228.0 157 69.4
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 6.6e-58 227.6 160 70.0
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 1.1e-57 226.9 153 69.3
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 7.3e-57 224.2 154 68.8
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 7.3e-57 224.2 209 56.5
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 2.1e-56 222.6 160 68.8
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 4.7e-56 221.5 144 75.7
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 1.4e-55 219.9 154 66.9
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 5.2e-55 218.0 154 68.8
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 1.2e-54 216.9 135 77.0
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 2.2e-53 212.6 245 49.0
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 5.4e-52 208.0 125 80.8
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 2.7e-51 205.7 144 68.8
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 7.8e-51 204.1 144 68.8
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 2.3e-50 202.6 123 80.5
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 3.9e-50 201.8 161 65.2
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 8.1e-48 194.1 162 59.9
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 2.4e-47 192.6 207 49.3
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 1.1e-44 183.7 158 57.0
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 2.4e-44 182.6 110 78.2
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 4.2e-44 181.8 112 75.0
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 4.6e-43 178.3 187 51.3
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 2.5e-41 172.6 101 86.1
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 2.5e-41 172.6 301 36.5
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 3.1e-39 165.6 133 63.9
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 5.3e-39 164.9 144 61.8
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 1.6e-35 153.3 154 50.6
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 3.9e-34 148.7 98 73.5
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 8.7e-34 147.5 146 63.0
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.1e-33 147.1 149 50.3
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 2.5e-33 146.0 149 49.7
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 9.6e-33 144.1 77 87.0
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 9.6e-33 144.1 113 63.7
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 9.0e-31 137.5 147 53.1
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 1.5e-30 136.7 156 45.5
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 6.0e-27 124.8 85 70.6
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 4.3e-25 118.6 146 43.8
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 8.1e-24 114.4 138 42.8
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 5.3e-23 111.7 101 65.3
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 4.5e-22 108.6 78 73.1
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 6.4e-21 104.8 65 75.4
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 6.4e-21 104.8 96 59.4
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 6.4e-21 104.8 96 59.4
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 8.4e-21 104.4 65 75.4
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 1.2e-19 100.5 64 75.0
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 2.1e-19 99.8 127 42.5
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.8e-18 96.7 64 71.9
AT3G57900 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 1.2e-11 73.9 96 46.9
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 1.3e-10 70.5 146 35.6
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 9.0e-07 57.8 69 47.8
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 1.2e-06 57.4 69 47.8
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 2.0e-06 56.6 49 61.2


User provided reference genes

Program Settings