Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 8.2e-94 347.1 176 100.0
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.8e-85 319.3 179 91.6
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 2.4e-85 318.9 178 91.6
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 9.1e-85 317.0 174 93.1
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 2.6e-84 315.5 174 93.1
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 1.0e-80 303.5 163 92.6
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 8.8e-80 300.4 179 87.2
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 1.5e-79 299.7 179 87.2
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 2.2e-78 295.8 176 85.8
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 4.8e-78 294.7 183 85.2
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 1.4e-77 293.1 163 89.0
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 8.5e-75 283.9 185 80.5
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 5.5e-74 281.2 163 86.5
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.8e-72 276.2 160 86.9
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.6e-71 272.3 165 84.2
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 8.3e-70 267.3 183 78.1
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.7e-67 259.6 189 73.5
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 3.8e-67 258.5 179 76.5
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 1.5e-66 256.5 162 80.9
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.2e-64 248.1 191 71.7
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.3e-54 216.9 176 69.3
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.6e-47 192.6 199 57.8
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 4.3e-42 175.3 177 59.3
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 9.5e-42 174.1 181 58.6
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.4e-39 165.2 179 57.0
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 4.6e-36 155.2 179 49.2
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 1.3e-35 153.7 177 53.7
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 3.0e-35 152.5 178 53.9
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 5.1e-35 151.8 176 54.0
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 5.1e-35 151.8 178 53.9
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 1.1e-34 150.6 177 53.1
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.1e-34 150.6 178 53.4
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.1e-34 150.6 195 48.7
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.1e-34 150.6 195 48.7
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 2.5e-34 149.4 186 48.4
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 7.3e-34 147.9 192 46.9
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.3e-34 147.9 195 48.2
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 9.5e-34 147.5 204 48.0
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 9.5e-34 147.5 180 50.0
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.8e-33 146.0 193 47.7
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 3.6e-33 145.6 182 48.4
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 4.7e-33 145.2 190 48.4
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 6.2e-33 144.8 185 49.2
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.1e-32 144.1 176 53.4
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 1.1e-32 144.1 195 47.7
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.4e-32 143.7 188 46.3
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.4e-32 143.7 189 49.7
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 5.2e-32 141.7 186 47.3
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 5.2e-32 141.7 184 47.8
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 6.8e-32 141.4 192 49.0
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 6.8e-32 141.4 187 47.1
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 6.8e-32 141.4 182 48.9
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 8.9e-32 141.0 175 48.6
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 8.9e-32 141.0 184 46.7
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 1.2e-31 140.6 190 48.4
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 1.5e-31 140.2 186 48.4
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.5e-31 140.2 187 46.5
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 2.0e-31 139.8 188 45.7
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 3.4e-31 139.0 195 47.7
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 4.4e-31 138.7 186 47.3
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 5.8e-31 138.3 179 49.7
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 7.6e-31 137.9 177 48.0
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 9.9e-31 137.5 180 48.3
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 9.9e-31 137.5 191 46.6
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.3e-30 137.1 182 47.8
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 2.2e-30 136.3 178 46.6
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.9e-30 136.0 199 44.7
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 2.9e-30 136.0 204 45.1
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 3.8e-30 135.6 189 46.6
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 3.8e-30 135.6 182 47.3
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.9e-30 135.2 182 47.8
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 6.4e-30 134.8 178 47.2
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 6.4e-30 134.8 181 47.0
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 6.4e-30 134.8 186 46.2
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.1e-29 134.0 198 43.4
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.1e-29 134.0 188 43.6
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.1e-29 134.0 187 47.1
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 1.9e-29 133.3 179 49.7
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 2.4e-29 132.9 190 41.6
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 3.2e-29 132.5 177 45.8
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 3.2e-29 132.5 185 44.9
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 3.2e-29 132.5 176 47.2
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.1e-29 132.1 198 46.0
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 7.1e-29 131.3 178 46.1
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 1.2e-28 130.6 201 43.8
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.6e-28 130.2 187 45.5
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 1.6e-28 130.2 195 45.1
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.6e-28 130.2 198 43.4
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.6e-28 130.2 195 45.1
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.6e-28 130.2 195 45.1
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 1.6e-28 130.2 188 45.7
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.1e-28 129.8 164 48.8
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.1e-28 129.8 198 44.4
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 2.1e-28 129.8 173 50.3
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.1e-28 129.8 196 45.9
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 2.1e-28 129.8 185 43.8
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.7e-28 129.4 170 46.5
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 2.7e-28 129.4 198 41.9
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 2.7e-28 129.4 179 48.0
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 3.5e-28 129.0 186 46.8
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 4.6e-28 128.6 178 44.9
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 4.6e-28 128.6 179 46.9
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 4.6e-28 128.6 204 44.1
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 7.8e-28 127.9 175 45.7
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 7.8e-28 127.9 196 45.4
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.3e-27 127.1 182 48.4
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 2.3e-27 126.3 203 44.8
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 3.0e-27 125.9 204 42.6
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 3.9e-27 125.6 186 45.2
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 5.1e-27 125.2 184 46.7
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 6.6e-27 124.8 205 43.4
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 6.6e-27 124.8 205 43.4
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 6.6e-27 124.8 213 42.7
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 8.7e-27 124.4 183 44.3
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.1e-26 124.0 154 48.1
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.1e-26 124.0 181 44.2
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.9e-26 123.2 210 42.4
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.9e-26 123.2 218 41.7
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.9e-26 123.2 170 44.7
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.9e-26 123.2 170 44.7
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 3.3e-26 122.5 175 45.1
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 3.3e-26 122.5 194 43.3
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.3e-26 122.5 181 42.0
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 3.3e-26 122.5 121 56.2
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 3.3e-26 122.5 182 45.6
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.3e-26 122.1 210 42.9
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 4.3e-26 122.1 191 45.0
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 5.6e-26 121.7 173 46.8
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 7.3e-26 121.3 180 44.4
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.1e-25 119.8 123 56.9
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 2.1e-25 119.8 192 43.2
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 2.8e-25 119.4 196 42.3
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 3.6e-25 119.0 186 43.5
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 4.7e-25 118.6 182 44.0
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 4.7e-25 118.6 183 44.3
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 6.2e-25 118.2 189 38.6
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 1.1e-24 117.5 194 42.3
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 1.8e-24 116.7 203 42.4
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 3.1e-24 115.9 192 41.7
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 4.0e-24 115.5 183 39.3
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 5.2e-24 115.2 181 42.0
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 9.0e-24 114.4 184 42.9
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.2e-23 114.0 188 42.6
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 1.5e-23 113.6 191 42.4
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 1.5e-23 113.6 191 42.4
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.5e-23 113.6 180 42.2
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.5e-23 113.6 193 40.9
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 2.0e-23 113.2 192 42.2
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 2.0e-23 113.2 176 41.5
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 2.0e-23 113.2 189 42.9
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 5.8e-23 111.7 185 40.0
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 5.8e-23 111.7 181 42.0
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 7.6e-23 111.3 148 45.3
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.3e-22 110.5 191 41.4
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 2.2e-22 109.8 186 44.1
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 4.9e-22 108.6 201 38.8
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 8.4e-22 107.8 195 42.1
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 8.4e-22 107.8 125 51.2
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.1e-21 107.5 149 43.0
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 1.9e-21 106.7 197 40.6
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 3.2e-21 105.9 155 42.6
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 5.4e-21 105.1 161 44.7
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 9.3e-21 104.4 153 44.4
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 3.5e-20 102.4 179 43.6
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 3.9e-19 99.0 173 41.6
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.9e-19 99.0 186 38.2
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 2.5e-18 96.3 114 50.0
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.3e-17 94.0 146 38.4
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 4.8e-17 92.0 113 49.6
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.8e-16 90.1 190 36.8
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 2.0e-15 86.7 141 40.4
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 5.8e-15 85.1 158 38.0
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 9.9e-15 84.3 141 39.7
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 3.2e-13 79.3 164 36.6
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 9.3e-13 77.8 106 46.2
Carub.0004s2450 Capsella rubella HOM05D003703 ORTHO05D004278 1.0e-11 74.3 189 38.6
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.3e-11 73.9 189 34.4
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.1e-10 70.9 273 29.3
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.3e-10 69.3 83 47.0
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 5.6e-10 68.6 164 33.5
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 7.4e-10 68.2 67 53.7
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 9.0e-08 61.2 77 46.8
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 5.8e-07 58.5 158 28.5
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.3e-06 57.4 116 33.6


User provided reference genes

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