Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g04700 Schrenkiella parvula HOM05D002612 ORTHO05D002859 3.1e-184 648.3 316 100.0
Thhalv10006160m.g Eutrema salsugineum HOM05D002612 ORTHO05D002859 3.2e-96 355.9 250 73.6
A09p50840 Brassica napus HOM05D002612 ORTHO05D002859 5.4e-88 328.6 245 72.7
C08p33580 Brassica napus HOM05D002612 ORTHO05D002859 1.6e-87 327.0 244 73.0
BolC8t50953H Brassica oleracea HOM05D002612 ORTHO05D002859 7.8e-87 324.7 244 72.5
BraA09t40530Z Brassica rapa HOM05D002612 ORTHO05D002859 1.3e-84 317.4 246 70.3
AL5G39680 Arabidopsis lyrata HOM05D002612 ORTHO05D002859 2.9e-81 306.2 242 69.0
AT3G58020 Arabidopsis thaliana HOM05D002612 ORTHO05D002859 1.6e-76 290.4 243 66.7
Carub.0005s2487 Capsella rubella HOM05D002612 ORTHO05D002859 5.1e-70 268.9 241 64.3
BcaC07g40175 Brassica carinata HOM05D002612 ORTHO05D002859 4.0e-67 259.2 247 61.1
CARHR168340 Cardamine hirsuta HOM05D002612 ORTHO05D002859 3.0e-62 243.0 241 59.3
AL4G40440 Arabidopsis lyrata HOM05D002612 ORTHO05D002859 6.9e-51 205.3 252 49.2
THA.LOC104802604 Tarenaya hassleriana HOM05D002612 ORTHO05D002859 1.2e-50 204.5 248 50.8
Carub.0004s2442 Capsella rubella HOM05D002612 ORTHO05D002859 3.4e-50 203.0 251 49.8
C04p03250 Brassica napus HOM05D002612 ORTHO05D002859 3.6e-47 193.0 259 47.9
BolC4t21963H Brassica oleracea HOM05D002612 ORTHO05D002859 3.6e-47 193.0 259 47.9
AT2G42080 Arabidopsis thaliana HOM05D002612 ORTHO05D002859 7.9e-47 191.8 252 47.6
BcaNung04409 Brassica carinata HOM05D002612 ORTHO05D002859 7.9e-47 191.8 257 47.1
Sp4g24300 Schrenkiella parvula HOM05D002612 ORTHO05D002859 1.4e-46 191.0 254 48.8
BraA05t19264Z Brassica rapa HOM05D002612 ORTHO05D002859 1.4e-43 181.0 258 46.1
BcaB06g29225 Brassica carinata HOM05D002612 ORTHO05D002859 1.8e-43 180.6 254 46.9
A05p02720 Brassica napus HOM05D002612 ORTHO05D002859 5.3e-43 179.1 258 45.7
BcaC02g07265 Brassica carinata HOM05D002612 ORTHO05D002859 1.3e-41 174.5 251 46.6
C04p69490 Brassica napus HOM05D002612 ORTHO05D002859 1.7e-41 174.1 251 46.2
BolC4t28448H Brassica oleracea HOM05D002612 ORTHO05D002859 1.7e-41 174.1 251 46.2
CARHR137160 Cardamine hirsuta HOM05D002612 ORTHO05D002859 1.9e-40 170.6 256 44.9
A04p31980 Brassica napus HOM05D002612 ORTHO05D002859 2.3e-38 163.7 251 44.6
BraA04t18656Z Brassica rapa HOM05D002612 ORTHO05D002859 1.5e-37 161.0 249 44.2
COL.COLO4_33978 Corchorus olitorius HOM05D005723 ORTHO05D005968 1.8e-35 154.1 259 39.8
BcaC02g12457 Brassica carinata HOM05D002612 ORTHO05D002859 7.0e-35 152.1 218 45.9
Aa31LG1G24120 Aethionema arabicum HOM05D002612 ORTHO05D002859 9.1e-35 151.8 283 39.2
Atru.chr8.1116 Acer truncatum HOM05D002612 ORTHO05D002859 4.2e-32 142.9 254 38.6
Duzib106G0243 Durio zibethinus HOM05D002612 ORTHO05D002859 8.0e-31 138.7 251 38.6
GSVIVG01033493001 Vitis vinifera HOM05D002612 ORTHO05D002859 2.3e-30 137.1 257 39.7
Sed0010869 Sechium edule HOM05D002612 ORTHO05D002859 5.2e-30 136.0 247 39.7
TAR623G0372 Trochodendron aralioides HOM05D002612 ORTHO05D002859 6.7e-30 135.6 263 40.3
Manes.09G035700 Manihot esculenta HOM05D002612 ORTHO05D002859 2.6e-29 133.7 249 38.2
Gohir.A09G128100 Gossypium hirsutum HOM05D002612 ORTHO05D002859 5.7e-29 132.5 246 39.8
CiPaw.10G026200 Carya illinoinensis HOM05D002612 ORTHO05D002859 7.4e-29 132.1 251 38.6
Thecc.05G171700 Theobroma cacao HOM05D002612 ORTHO05D002859 1.7e-28 131.0 245 39.2
PGR142G1191 Punica granatum HOM05D002612 ORTHO05D002859 2.8e-28 130.2 247 36.8
CsaV3_3G038780 Cucumis sativus L. HOM05D002612 ORTHO05D002859 1.4e-27 127.9 253 37.2
Sed0006567 Sechium edule HOM05D002612 ORTHO05D002859 1.8e-27 127.5 247 37.2
Gorai.006G142900 Gossypium raimondii HOM05D002612 ORTHO05D002859 4.1e-27 126.3 246 38.2
Gohir.D09G124100 Gossypium hirsutum HOM05D002612 ORTHO05D002859 1.2e-26 124.8 246 37.8
MD14G1056500 Malus domestica HOM05D002612 ORTHO05D002859 7.7e-26 122.1 250 34.4
Ciclev10012465m.g Citrus clementina HOM05D002612 ORTHO05D002859 2.2e-25 120.6 257 36.6
Eucgr.K01842 Eucalyptus grandis HOM05D002612 ORTHO05D002859 3.8e-25 119.8 248 35.9
MSTRG.19906 Avicennia marina HOM05D002612 ORTHO05D002859 8.5e-25 118.6 249 35.7
Cc06_g15900 Coffea canephora HOM05D002612 ORTHO05D002859 8.5e-25 118.6 266 37.2
arahy.Tifrunner.gnm1.ann1.47DXFL Arachis hypogaea HOM05D002612 ORTHO05D002859 1.1e-24 118.2 253 36.0
arahy.Tifrunner.gnm1.ann1.J786L6 Arachis hypogaea HOM05D002612 ORTHO05D002859 1.1e-24 118.2 253 36.0
TWI74G1029 Tripterygium wilfordii HOM05D002612 ORTHO05D002859 1.1e-24 118.2 257 36.2
Phvul.007G260100 Phaseolus vulgaris HOM05D002612 ORTHO05D002859 1.5e-24 117.9 223 39.9
Duzib128G1439 Durio zibethinus HOM05D002612 ORTHO05D002859 1.9e-24 117.5 245 37.6
Cfa020162 Carpinus fangiana HOM05D002612 ORTHO05D002859 3.2e-24 116.7 249 35.7
TPR.G32347 Trifolium pratense HOM05D002612 ORTHO05D002859 4.2e-24 116.3 228 38.2
Aqoxy2G00058 Aquilegia oxysepala HOM05D002612 ORTHO05D002859 7.2e-24 115.5 246 37.0
Nitab4.5_0002488g0060 Nicotiana tabacum HOM05D002612 ORTHO05D002859 1.2e-23 114.8 258 36.8
RcHm_v2.0_Chr3g0479541 Rosa chinensis HOM05D002612 ORTHO05D002859 1.6e-23 114.4 251 34.3
Thhalv10017091m.g Eutrema salsugineum HOM05D002612 ORTHO05D002859 2.1e-23 114.0 230 37.8
EL10Ac3g06912 Beta vulgaris HOM05D002612 ORTHO05D002859 6.1e-23 112.5 256 35.5
Nitab4.5_0000324g0010 Nicotiana tabacum HOM05D002612 ORTHO05D002859 8.0e-23 112.1 261 36.4
Sabra16G0049300 Salix brachista HOM05D002612 ORTHO05D002859 8.0e-23 112.1 211 36.5
AUR62012027 Chenopodium quinoa HOM05D002612 ORTHO05D002859 1.0e-22 111.7 256 35.9
AUR62015364 Chenopodium quinoa HOM05D002612 ORTHO05D002859 1.0e-22 111.7 259 36.7
Glyma.02G172700 Glycine max HOM05D002612 ORTHO05D002859 1.4e-22 111.3 231 37.7
Hma1.2p1_0676F.1_g201950 Hydrangea macrophylla HOM05D002612 ORTHO05D002859 3.0e-22 110.2 259 34.4
CAN.G570.9 Capsicum annuum HOM05D002612 ORTHO05D002859 6.8e-22 109.0 256 34.4
Oeu033736.1 Olea europaea HOM05D002612 ORTHO05D002859 6.8e-22 109.0 250 35.6
VMungo1383G3725 Vigna mungo HOM05D002612 ORTHO05D002859 6.8e-22 109.0 233 38.2
Nn2g15693 Nelumbo nucifera HOM05D002612 ORTHO05D002859 1.2e-21 108.2 213 37.1
Ca_12071_v3 Cicer arietinum L. HOM05D002612 ORTHO05D002859 1.5e-21 107.8 229 38.4
MBI06_g15023_MAGBIO Magnolia biondii HOM05D002612 ORTHO05D002859 1.5e-21 107.8 242 34.7
Prupe.7G077400 Prunus persica HOM05D002612 ORTHO05D002859 1.5e-21 107.8 252 35.7
Hund19204 Selenicereus undatus HOM05D002612 ORTHO05D002859 1.5e-21 107.8 250 34.8
Lalb_Chr18g0047881 Lupinus albus HOM05D002612 ORTHO05D002859 2.6e-21 107.1 240 36.2
Sopen03g016040 Solanum pennellii HOM05D002612 ORTHO05D002859 2.6e-21 107.1 257 34.2
Solyc03g063350.3 Solanum lycopersicum HOM05D002612 ORTHO05D002859 4.4e-21 106.3 252 34.1
Peaxi162Scf00258g00631 Petunia axillaris HOM05D002612 ORTHO05D002859 7.5e-21 105.5 296 32.4
FvH4_6g22210 Fragaria vesca HOM05D002612 ORTHO05D002859 9.8e-21 105.1 252 32.5
FAN14G3252 Fragaria x ananassa HOM05D002612 ORTHO05D002859 6.3e-20 102.4 252 32.1
PSO675G2711 Papaver somniferum HOM05D002612 ORTHO05D002859 8.3e-20 102.1 238 35.3
Psat6g091240 Pisum sativum HOM05D002612 ORTHO05D002859 8.3e-20 102.1 227 36.6
Dinv24067 Davidia involucrata HOM05D002612 ORTHO05D002859 1.1e-19 101.7 269 32.0
Migut.J01834 Erythranthe guttata HOM05D002612 ORTHO05D002859 1.1e-19 101.7 252 36.1
SGA_v2.0_scaffold105G30491 Striga asiatica HOM05D002612 ORTHO05D002859 3.1e-19 100.1 241 33.2
Phvul.001G142600 Phaseolus vulgaris HOM05D002612 ORTHO05D002859 4.1e-19 99.8 237 35.0
ClCG10G017560 Citrullus lanatus HOM05D002612 ORTHO05D002859 5.4e-19 99.4 210 38.6
Glyma.19G148000 Glycine max HOM05D002612 ORTHO05D002859 5.4e-19 99.4 236 35.6
unitig_699.g19445 Utricularia gibba HOM05D002612 ORTHO05D002859 7.0e-19 99.0 230 33.9
QL07p023812 Quercus lobata HOM05D002612 ORTHO05D002859 1.2e-18 98.2 168 42.3
SalBow6G0399 Salvia bowleyana HOM05D002612 ORTHO05D002859 1.2e-18 98.2 252 31.0
SalBow6G1620 Salvia bowleyana HOM05D002612 ORTHO05D002859 1.2e-18 98.2 252 31.0
Lj5g0018767 Lotus japonicus HOM05D002612 ORTHO05D002859 1.6e-18 97.8 225 35.6
HanXRQChr01g0009751 Helianthus annuus HOM05D002612 ORTHO05D002859 2.7e-18 97.1 253 32.4
Rhsim03G0005800 Rhododendron simsii HOM05D002612 ORTHO05D002859 1.0e-17 95.1 297 31.6
Carub.0004s2441 Capsella rubella HOM05D002612 ORTHO05D002859 2.9e-17 93.6 261 33.7
Lsat_1_v5_gn_5_163560 Lactuca sativa HOM05D002612 ORTHO05D002859 5.0e-17 92.8 188 37.8
ATR0807G015 Amborella trichopoda HOM05D002612 ORTHO05D002859 1.9e-16 90.9 246 33.3
CANSAT64G1369 Cannabis sativa HOM05D002612 ORTHO05D002859 1.9e-16 90.9 247 32.4
Cpa.g.sc85.63 Carica papaya HOM05D002612 ORTHO05D002859 3.2e-16 90.1 190 33.7
SGA_v2.0_scaffold37G14819 Striga asiatica HOM05D002612 ORTHO05D002859 9.4e-16 88.6 247 33.2
Os07g0470800 Oryza sativa ssp. japonica HOM05D002612 ORTHO05D002859 4.0e-14 83.2 197 33.5
HPP92_022664 Vanilla planifolia HOM05D002612 ORTHO05D002859 5.2e-14 82.8 208 30.3
ECA248G2814 Erigeron canadensis HOM05D000267 ORTHO05D000298 3.4e-13 80.1 218 31.2
MELO3C009622.2 Cucumis melo HOM05D002612 ORTHO05D002859 5.7e-13 79.3 142 40.8
CSS0019314 Camellia sinensis var. sinensis HOM05D002612 ORTHO05D002859 9.8e-13 78.6 134 42.5
PGSC0003DMG400019954 Solanum tuberosum HOM05D002612 ORTHO05D002859 9.8e-13 78.6 165 36.4
FAN14G2805 Fragaria x ananassa HOM05D002612 ORTHO05D002859 2.2e-12 77.4 258 30.2
Medtr0015s0110 Medicago truncatula HOM05D002612 ORTHO05D002859 2.2e-12 77.4 228 32.9
Ah.04g152500 Amaranthus hybridus HOM05D005723 ORTHO05D005968 2.4e-11 73.9 178 30.9
Zm00001eb320120 Zea mays HOM05D002612 ORTHO05D002859 5.4e-11 72.8 191 32.5
FAN09G3207 Fragaria x ananassa HOM05D002612 ORTHO05D002859 1.0e-09 68.6 132 34.8
Sc13g0002290 Simmondsia chinensis HOM05D002612 ORTHO05D002859 1.3e-09 68.2 237 31.2
VMungo0720G2417 Vigna mungo HOM05D005723 ORTHO05D005968 1.7e-09 67.8 161 36.6
Actinidia32395 Actinidia chinensis HOM05D002612 ORTHO05D002859 5.0e-09 66.2 40 72.5
Glyma.03G144900 Glycine max HOM05D002612 ORTHO05D002859 3.3e-08 63.5 38 76.3
Oeu034267.1 Olea europaea HOM05D002612 ORTHO05D002859 4.2e-08 63.2 39 71.8
BcaB06g29224 Brassica carinata HOM05D002612 ORTHO05D002859 5.6e-08 62.8 103 41.7
Medtr3g095470 Medicago truncatula HOM05D002612 ORTHO05D002859 7.2e-08 62.4 234 28.2
Sabra06G0147900 Salix brachista HOM05D002612 ORTHO05D002859 1.0e-06 58.5 170 30.6
BcaC02g07266 Brassica carinata HOM05D002612 ORTHO05D002859 1.8e-06 57.8 115 38.3
MD12G1056800 Malus domestica HOM05D002612 ORTHO05D002859 1.8e-06 57.8 98 41.8
ATR0820G143 Amborella trichopoda HOM05D002612 ORTHO05D002859 3.0e-06 57.0 65 47.7
Cc06_g15910 Coffea canephora HOM05D002612 ORTHO05D002859 3.0e-06 57.0 87 41.4
DCAR_013544 Daucus carota HOM05D002612 ORTHO05D002859 5.2e-06 56.2 205 27.3
Dinv09944 Davidia involucrata HOM05D002612 ORTHO05D002859 6.8e-06 55.8 86 41.9
Cfa002873 Carpinus fangiana HOM05D002612 ORTHO05D002859 8.9e-06 55.5 100 35.0
Sabra16G0194700 Salix brachista HOM05D002612 ORTHO05D002859 8.9e-06 55.5 39 59.0


User provided reference genes

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