Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 0.0e+00 1483.8 793 100.0
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 0.0e+00 1211.1 763 86.2
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 0.0e+00 1120.1 780 78.6
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 0.0e+00 1119.8 786 79.0
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.1e-311 1072.8 791 76.0
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 4.9e-303 1044.3 780 72.8
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 1.6e-301 1039.3 812 74.1
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 5.9e-301 1037.3 812 74.0
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 3.8e-300 1034.6 813 73.9
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 1.0e-292 1010.0 814 72.5
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 6.4e-287 990.7 837 70.3
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 1.4e-273 946.4 787 71.4
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 2.0e-216 756.5 782 57.7
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 1.8e-209 733.4 689 64.6
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 5.4e-177 625.5 759 52.6
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 7.8e-168 595.1 756 52.6
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 3.1e-148 530.0 737 48.8
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.3e-133 481.5 779 43.3
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 7.4e-126 455.7 771 43.5
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 9.6e-126 455.3 771 43.5
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.6e-125 454.5 785 43.1
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 1.4e-124 451.4 795 42.0
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 2.5e-121 440.7 679 42.9
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 8.2e-117 425.6 765 40.4
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 8.2e-117 425.6 674 42.7
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 7.7e-115 419.1 773 39.7
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 1.3e-114 418.3 704 41.1
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 2.2e-114 417.5 681 42.6
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 2.9e-114 417.2 677 43.3
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 1.0e-111 408.7 765 38.4
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 1.1e-110 405.2 596 45.1
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 5.7e-110 402.9 667 41.4
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 5.7e-110 402.9 755 39.2
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.8e-109 400.6 799 38.5
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.8e-108 397.9 735 39.0
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 6.9e-108 396.0 656 39.8
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 6.9e-108 396.0 688 40.3
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 3.4e-107 393.7 833 36.3
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 4.5e-107 393.3 733 38.7
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 5.9e-107 392.9 806 38.6
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.2e-104 385.2 807 35.9
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 2.1e-104 384.4 738 36.9
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 3.6e-104 383.6 716 39.8
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 1.4e-103 381.7 827 36.2
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 1.5e-102 378.3 782 37.6
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 4.4e-102 376.7 795 38.9
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 7.4e-102 375.9 620 40.2
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 2.8e-101 374.0 666 39.0
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 4.8e-101 373.2 781 37.0
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 1.1e-100 372.1 682 39.1
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.1e-100 372.1 769 36.0
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 2.0e-99 367.9 689 39.0
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 1.7e-98 364.8 822 35.4
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 6.5e-98 362.8 725 38.6
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 6.5e-98 362.8 651 40.2
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 8.5e-98 362.5 663 40.4
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 1.9e-97 361.3 724 38.1
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 2.5e-97 360.9 757 35.9
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 2.1e-96 357.8 649 37.8
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 3.6e-96 357.1 646 37.5
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 8.0e-96 355.9 744 37.8
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 2.3e-95 354.4 793 34.4
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 6.7e-95 352.8 742 37.9
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.5e-94 351.7 667 38.1
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 3.3e-94 350.5 731 37.2
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 4.4e-94 350.1 784 36.2
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 5.7e-94 349.7 882 34.4
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 9.7e-94 349.0 684 37.6
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 6.3e-93 346.3 738 37.5
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 8.2e-93 345.9 819 35.3
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 5.3e-92 343.2 643 38.7
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 9.1e-92 342.4 727 36.6
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 7.7e-91 339.3 647 38.3
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 3.8e-90 337.0 756 34.4
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 8.5e-90 335.9 637 38.8
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 1.1e-89 335.5 758 35.4
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 9.4e-89 332.4 662 37.6
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 3.6e-88 330.5 647 35.5
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 6.1e-88 329.7 689 35.7
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 8.0e-88 329.3 777 35.1
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 1.2e-86 325.5 665 38.0
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 4.4e-86 323.6 229 80.3
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 1.3e-85 322.0 758 34.0
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 1.3e-85 322.0 655 36.9
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 2.2e-82 311.2 672 34.8
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 1.5e-81 308.5 695 35.7
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 9.4e-81 305.8 740 34.6
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 3.6e-80 303.9 837 32.6
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 6.1e-80 303.1 702 34.3
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 6.1e-80 303.1 658 37.5
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 3.0e-79 300.8 813 33.9
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 4.0e-79 300.4 690 33.8
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 2.8e-77 294.3 659 36.1
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 1.2e-75 288.9 884 31.3
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 1.0e-74 285.8 660 33.6
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 2.9e-74 284.3 825 33.9
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 3.4e-70 270.8 665 34.1
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 3.4e-70 270.8 781 32.5
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.7e-69 268.5 740 29.9
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 4.9e-69 266.9 794 31.1
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 1.1e-68 265.8 841 30.4
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 2.4e-68 264.6 627 35.4
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 2.8e-64 251.1 944 28.8
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 3.6e-64 250.8 696 32.3
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 1.4e-63 248.8 768 30.1
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 1.8e-63 248.4 834 30.7
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 2.6e-62 244.6 827 28.8
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 3.7e-61 240.7 654 33.8
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 8.3e-61 239.6 745 31.3
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 4.1e-60 237.3 936 28.5
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 4.6e-59 233.8 661 32.8
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 3.0e-58 231.1 574 31.9
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.8e-55 221.9 307 46.6
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 3.4e-54 217.6 268 44.8
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 5.1e-50 203.8 790 30.8
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 3.3e-49 201.1 434 36.9
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 1.2e-48 199.1 660 28.8
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 6.2e-48 196.8 279 45.5
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.2e-45 188.3 741 25.2
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 3.9e-42 177.6 652 26.5
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 5.6e-41 173.7 278 41.4
THA.LOC104802250 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 4.4e-38 164.1 164 59.8
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 2.3e-34 151.8 218 39.0
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 3.0e-34 151.4 135 52.6
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 1.2e-30 139.4 370 34.1
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 5.4e-28 130.6 150 42.0
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 9.3e-28 129.8 232 39.2
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 2.7e-27 128.3 133 52.6
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 8.7e-26 123.2 144 52.1
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 2.5e-25 121.7 791 24.7
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 4.9e-21 107.5 398 30.9
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 4.0e-15 87.8 203 31.5
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 1.3e-13 82.8 220 33.6
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 2.2e-13 82.0 264 28.8
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 4.9e-13 80.9 337 27.6
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 4.9e-13 80.9 480 27.5
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 1.6e-11 75.9 76 55.3
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 7.9e-11 73.6 103 40.8


User provided reference genes

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