Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 2.4e-153 545.4 266 100.0
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 1.3e-127 459.9 258 84.1
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 4.2e-126 454.9 259 85.7
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 2.7e-125 452.2 258 85.3
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 3.0e-124 448.7 263 83.7
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 5.2e-124 448.0 258 85.7
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 3.3e-123 445.3 261 83.1
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.1e-121 440.3 259 84.2
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 7.0e-121 437.6 258 82.2
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 2.2e-119 432.6 280 76.1
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 1.1e-118 430.3 258 81.8
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 6.1e-117 424.5 300 72.0
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 5.2e-116 421.4 256 81.6
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 5.0e-111 404.8 258 77.5
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 2.8e-109 399.1 257 76.7
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 1.0e-108 397.1 258 76.0
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 5.6e-102 374.8 301 66.4
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 7.8e-96 354.4 222 77.0
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.0e-95 354.0 258 65.5
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 3.0e-95 352.4 258 66.3
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.5e-94 349.4 259 65.3
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 9.5e-94 347.4 258 65.9
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 1.2e-93 347.1 258 65.1
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 1.6e-93 346.7 259 66.0
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 1.6e-93 346.7 260 65.0
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 3.6e-93 345.5 258 64.7
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 1.1e-92 344.0 265 62.6
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 1.4e-92 343.6 259 64.1
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 5.2e-92 341.7 258 62.8
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 1.2e-91 340.5 258 63.2
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.5e-91 340.1 259 63.3
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 3.4e-91 339.0 262 62.2
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 4.4e-91 338.6 260 63.1
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 2.2e-90 336.3 258 64.3
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 3.7e-90 335.5 259 62.5
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 6.4e-90 334.7 259 62.9
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 8.3e-90 334.3 259 62.2
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 1.4e-89 333.6 259 61.8
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 5.4e-89 331.6 259 63.7
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 9.2e-89 330.9 259 61.0
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 4.6e-88 328.6 259 63.7
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 4.6e-88 328.6 259 63.7
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 6.0e-88 328.2 258 60.9
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 1.3e-87 327.0 259 60.6
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 1.1e-86 323.9 261 60.2
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 1.5e-86 323.6 217 70.0
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.9e-86 323.2 259 59.5
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 2.5e-86 322.8 258 58.1
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 3.3e-86 322.4 259 57.1
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 7.3e-86 321.2 258 59.7
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 7.3e-86 321.2 260 60.4
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 9.5e-86 320.9 263 60.8
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.2e-85 320.5 259 59.1
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 2.8e-85 319.3 291 56.7
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 4.7e-85 318.5 260 59.6
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.7e-85 318.5 260 59.6
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 1.1e-84 317.4 259 59.1
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 1.4e-84 317.0 259 60.2
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 4.0e-84 315.5 260 58.8
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 5.2e-84 315.1 259 59.1
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 5.2e-84 315.1 260 61.2
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-83 313.5 253 60.5
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.0e-83 313.2 251 61.0
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 2.6e-83 312.8 260 59.2
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 5.8e-83 311.6 297 52.2
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 5.8e-83 311.6 262 59.2
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 3.7e-82 308.9 239 60.7
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.4e-82 308.1 272 56.2
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 8.3e-82 307.8 221 71.5
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 8.3e-82 307.8 259 57.9
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.1e-81 307.4 261 57.5
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 1.4e-81 307.0 259 58.7
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 4.1e-81 305.4 258 58.9
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 1.2e-80 303.9 258 56.2
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.2e-80 303.9 239 60.7
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 2.1e-80 303.1 258 59.7
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.7e-80 302.8 207 67.6
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.7e-80 302.8 207 67.6
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.7e-80 302.8 242 60.3
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 3.5e-80 302.4 258 57.4
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.5e-80 302.4 216 64.4
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 4.6e-80 302.0 259 56.8
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 8.6e-79 297.7 222 63.1
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 1.5e-78 297.0 279 53.8
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 1.6e-77 293.5 258 53.5
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 2.1e-77 293.1 220 60.5
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 2.1e-77 293.1 325 48.3
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.4e-76 290.4 240 58.3
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 1.4e-76 290.4 236 59.3
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 4.4e-75 285.4 240 57.1
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 2.2e-74 283.1 278 50.4
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 3.2e-73 279.3 181 74.6
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 7.1e-73 278.1 259 51.4
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 7.8e-72 274.6 219 64.8
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 1.7e-71 273.5 240 56.2
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 2.3e-71 273.1 200 64.5
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 3.0e-71 272.7 265 53.6
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 1.1e-70 270.8 141 88.7
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 1.5e-70 270.4 259 52.9
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 2.5e-70 269.6 258 49.6
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 4.3e-70 268.9 211 59.2
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 4.3e-70 268.9 272 51.5
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.2e-66 256.5 200 63.0
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 2.2e-66 256.5 262 51.9
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 6.4e-66 255.0 182 64.8
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 6.0e-64 248.4 203 56.7
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 4.8e-61 238.8 181 60.8
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 2.4e-57 226.5 187 56.7
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 9.3e-57 224.6 215 52.6
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 1.2e-56 224.2 126 84.9
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 2.1e-56 223.4 268 47.8
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 6.7e-55 218.4 195 54.4
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-54 217.2 185 57.8
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 1.1e-52 211.1 177 58.2
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 1.5e-51 207.2 271 43.9
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 1.3e-50 204.1 172 59.9
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 1.6e-48 197.2 191 48.7
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 4.6e-48 195.7 213 43.7
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.1e-46 191.0 185 47.6
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 4.3e-46 189.1 168 56.5
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.3e-45 187.6 150 60.7
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.6e-45 187.2 143 59.4
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.2e-43 181.0 221 43.0
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.0e-43 180.3 152 56.6
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 1.1e-41 174.5 251 40.2
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 1.9e-38 163.7 131 58.8
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 5.7e-38 162.2 130 62.3
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 9.0e-36 154.8 216 40.3
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 1.1e-33 147.9 119 62.2
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.2e-32 144.4 192 40.1
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.6e-32 142.9 99 68.7
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 3.6e-32 142.9 372 28.0
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 6.1e-32 142.1 113 58.4
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.3e-31 140.2 113 61.9
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.0e-31 139.8 113 61.9
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 8.8e-31 138.3 113 60.2
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 1.0e-26 124.8 233 30.5
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 3.2e-25 119.8 256 29.7
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 3.2e-25 119.8 149 45.6
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.6e-24 117.5 239 33.9
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.6e-22 110.2 97 54.6
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 1.2e-19 101.3 96 53.1
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.2e-19 101.3 66 65.2
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.5e-19 100.9 66 60.6
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.4e-19 99.8 66 63.6
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 4.5e-19 99.4 61 72.1
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.5e-18 95.5 82 54.9
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 1.2e-16 91.3 76 60.5
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.7e-16 90.1 68 63.2
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 1.8e-15 87.4 90 52.2
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 3.0e-15 86.7 75 57.3
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.6e-14 83.6 71 56.3
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 5.7e-14 82.4 82 53.7
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 8.2e-13 78.6 91 45.1
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 2.6e-11 73.6 59 55.9
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 6.5e-10 68.9 58 55.2
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 1.1e-09 68.2 47 63.8
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 6.7e-07 58.9 63 42.9
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 1.2e-06 58.2 47 55.3
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 2.0e-06 57.4 65 49.2
SHI05350 Sapria himalayana HOM05D004561 ORTHO05D005315 2.0e-06 57.4 159 25.8


User provided reference genes

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