Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 4.1e-139 498.0 249 100.0
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 4.4e-125 451.4 249 91.2
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 2.2e-124 449.1 249 89.6
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 4.1e-123 444.9 249 89.2
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 3.5e-122 441.8 249 88.0
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 8.8e-118 427.2 249 86.3
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 1.2e-117 426.8 250 86.4
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 3.7e-116 421.8 246 85.8
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 2.4e-115 419.1 239 87.4
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 3.6e-111 405.2 232 87.9
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 3.6e-111 405.2 232 87.9
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 8.3e-108 394.0 235 84.7
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 8.3e-108 394.0 232 85.8
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 3.2e-99 365.5 238 75.2
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 2.7e-82 309.3 231 68.8
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 7.8e-82 307.8 229 67.7
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 5.1e-81 305.1 227 67.8
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 5.1e-81 305.1 230 67.0
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 6.6e-81 304.7 223 68.6
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 1.1e-80 303.9 232 65.5
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 3.3e-80 302.4 230 66.5
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 4.3e-80 302.0 204 78.4
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 1.2e-79 300.4 223 68.2
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 1.2e-79 300.4 225 65.8
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 1.6e-79 300.1 234 63.2
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 2.1e-79 299.7 228 67.1
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 3.6e-79 298.9 229 66.4
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 3.6e-79 298.9 226 68.1
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 6.2e-79 298.1 222 66.7
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 6.2e-79 298.1 234 64.1
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 1.1e-78 297.4 224 64.7
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 3.1e-78 295.8 234 63.2
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 3.1e-78 295.8 226 67.7
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 4.0e-78 295.4 228 66.2
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 8.9e-78 294.3 222 65.3
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 8.9e-78 294.3 226 65.5
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 1.2e-77 293.9 223 64.6
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 2.0e-77 293.1 223 64.1
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 3.4e-77 292.4 225 65.3
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 3.4e-77 292.4 239 63.2
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 4.4e-77 292.0 226 67.3
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 5.8e-77 291.6 232 64.2
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 7.6e-77 291.2 214 66.4
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 1.7e-76 290.0 215 67.9
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 2.2e-76 289.7 225 63.6
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 2.9e-76 289.3 249 59.8
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 8.4e-76 287.7 224 64.3
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 1.4e-75 287.0 223 64.1
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 1.4e-75 287.0 221 65.2
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 1.4e-75 287.0 223 65.0
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 2.4e-75 286.2 223 65.0
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 3.2e-75 285.8 220 65.9
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 3.2e-75 285.8 223 65.0
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 4.1e-75 285.4 223 63.7
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 7.1e-75 284.6 219 63.5
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 7.1e-75 284.6 217 65.9
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 9.2e-75 284.3 216 67.1
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 1.6e-74 283.5 227 61.2
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 2.1e-74 283.1 225 62.2
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 2.3e-73 279.6 224 64.3
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 2.3e-73 279.6 225 61.3
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 3.0e-73 279.3 231 61.5
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 3.9e-73 278.9 230 62.2
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 5.6e-72 275.0 227 61.7
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 7.3e-72 274.6 225 62.2
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 7.3e-72 274.6 223 62.8
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 7.3e-72 274.6 216 65.3
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 1.6e-71 273.5 241 59.8
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 1.6e-71 273.5 219 64.4
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 2.1e-71 273.1 222 62.2
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 2.8e-71 272.7 232 61.2
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 3.6e-71 272.3 225 62.2
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 3.6e-71 272.3 221 62.0
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 3.6e-71 272.3 221 62.0
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 4.7e-71 271.9 223 62.8
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 1.1e-70 270.8 221 62.0
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 1.4e-70 270.4 223 61.0
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 1.4e-70 270.4 228 60.1
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 2.4e-70 269.6 241 58.9
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 9.0e-70 267.7 249 57.0
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 5.8e-69 265.0 223 60.5
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 9.9e-69 264.2 227 58.6
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 2.2e-68 263.1 223 59.6
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 3.8e-68 262.3 239 58.2
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.4e-67 260.4 225 59.6
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 1.6e-66 256.9 236 57.6
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 1.7e-65 253.4 253 55.3
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 2.3e-65 253.1 244 54.5
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 3.0e-65 252.7 228 58.8
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 8.7e-65 251.1 225 60.0
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.6e-63 246.9 249 53.8
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 2.8e-63 246.1 221 59.3
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 8.1e-63 244.6 232 54.7
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 2.7e-58 229.6 233 51.1
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 5.6e-56 221.9 233 49.8
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 2.8e-55 219.5 208 57.2
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 1.4e-54 217.2 180 63.3
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 5.8e-53 211.8 133 78.2
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 3.9e-49 199.1 129 69.8
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 4.3e-48 195.7 123 74.0
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.8e-47 193.0 155 61.9
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.7e-47 192.6 156 61.5
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 1.1e-46 191.0 197 52.8
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 1.0e-44 184.5 211 50.7
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.3e-44 184.1 124 66.9
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 2.9e-44 183.0 124 66.1
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 8.4e-44 181.4 150 61.3
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 7.1e-43 178.3 120 73.3
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 2.7e-42 176.4 171 56.7
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 5.7e-40 168.7 256 37.5
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 5.9e-37 158.7 149 55.0
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 1.1e-35 154.5 102 68.6
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 2.7e-34 149.8 124 59.7
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 2.2e-31 140.2 150 46.7
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 4.8e-31 139.0 141 50.4
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 6.9e-30 135.2 99 74.7
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 5.0e-28 129.0 74 85.1
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 9.4e-27 124.8 77 75.3
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 2.7e-26 123.2 79 72.2
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 7.9e-26 121.7 78 74.4
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.0e-25 121.3 77 72.7
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.8e-25 120.6 79 73.4
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.0e-25 119.8 79 72.2
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.0e-25 119.8 79 72.2
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 5.1e-25 119.0 78 73.1
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 5.1e-25 119.0 78 73.1
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 9.1e-22 108.2 67 68.7
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 6.5e-20 102.1 145 46.2
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 3.2e-19 99.8 68 66.2
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 4.2e-19 99.4 100 55.0
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 5.5e-19 99.0 103 52.4
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 1.3e-15 87.8 68 61.8
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 1.7e-15 87.4 97 52.6
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 3.7e-15 86.3 79 55.7
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 3.1e-14 83.2 55 69.1
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 5.3e-14 82.4 61 55.7
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 1.2e-13 81.3 53 64.2
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 7.7e-13 78.6 47 72.3
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 1.0e-12 78.2 49 69.4
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 5.0e-12 75.9 64 54.7
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 4.2e-11 72.8 175 29.7
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 3.6e-10 69.7 56 51.8
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 6.1e-10 68.9 166 25.3
Cre10.g418700 Chlamydomonas reinhardtii HOM05D005267 ORTHO05D006303 1.5e-08 64.3 114 31.6
Pp3c20_11400 Physcomitrium patens HOM05D005267 ORTHO05D006303 5.7e-08 62.4 165 23.0
MCO14G360 Micromonas commoda HOM05D005267 ORTHO05D006303 7.5e-08 62.0 163 28.2
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 2.2e-07 60.5 148 25.0
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 2.8e-07 60.1 36 69.4
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 1.1e-06 58.2 135 27.4
FvH4_6g21293 Fragaria vesca HOM05D005267 ORTHO05D006303 1.1e-06 58.2 35 71.4


User provided reference genes

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