Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g04340 Schrenkiella parvula HOM05D007176 ORTHO05D009050 1.1e-156 557.0 354 100.0
C08p33910 Brassica napus HOM05D007176 ORTHO05D009050 1.0e-135 487.3 354 86.2
BcaC07g40246 Brassica carinata HOM05D007176 ORTHO05D009050 8.7e-135 484.2 354 81.9
A09p51090 Brassica napus HOM05D007176 ORTHO05D009050 3.1e-132 475.7 378 77.0
CARHR168930 Cardamine hirsuta HOM05D007176 ORTHO05D009050 1.3e-130 470.3 354 87.0
Aa31LG10G13110 Aethionema arabicum HOM05D007176 ORTHO05D009050 2.3e-127 459.5 354 79.1
THA.LOC104802720 Tarenaya hassleriana HOM05D007176 ORTHO05D009050 7.9e-120 434.5 355 77.5
AL5G40300 Arabidopsis lyrata HOM05D007176 ORTHO05D009050 1.3e-117 427.2 354 81.1
Thhalv10006065m.g Eutrema salsugineum HOM05D007176 ORTHO05D009050 1.6e-117 426.8 354 83.6
Carub.0005s2528 Capsella rubella HOM05D007176 ORTHO05D009050 1.6e-112 410.2 354 81.4
AT3G58530 Arabidopsis thaliana HOM05D007176 ORTHO05D009050 6.0e-112 408.3 354 80.8
Gohir.A04G053500 Gossypium hirsutum HOM05D007176 ORTHO05D009050 7.1e-105 384.8 347 68.6
Duzib106G0399 Durio zibethinus HOM05D007176 ORTHO05D009050 3.0e-103 379.4 347 66.3
Thecc.05G178200 Theobroma cacao HOM05D007176 ORTHO05D009050 1.9e-102 376.7 347 64.6
Dinv16365 Davidia involucrata HOM05D007176 ORTHO05D009050 6.9e-100 368.2 354 65.0
RcHm_v2.0_Chr3g0478871 Rosa chinensis HOM05D007176 ORTHO05D009050 3.2e-97 359.4 345 65.5
BolC8t50987H Brassica oleracea HOM05D000032 ORTHO05D001620 3.9e-95 352.4 277 78.7
BraA09t40553Z Brassica rapa HOM05D000032 ORTHO05D001620 7.4e-94 348.2 278 82.7
Cfa020128 Carpinus fangiana HOM05D007176 ORTHO05D009050 4.5e-91 339.0 357 52.9
Manes.09G039600 Manihot esculenta HOM05D007176 ORTHO05D009050 2.9e-90 336.3 354 62.1
MD14G1051600 Malus domestica HOM05D007176 ORTHO05D009050 8.8e-87 324.7 355 61.4
Nn2g15783 Nelumbo nucifera HOM05D007176 ORTHO05D009050 3.1e-84 316.2 353 57.5
BcaC02g10014 Brassica carinata HOM05D007176 ORTHO05D009050 7.0e-84 315.1 297 78.5
FvH4_6g21620 Fragaria vesca HOM05D007176 ORTHO05D009050 1.5e-83 313.9 350 60.3
TAR633G1141 Trochodendron aralioides HOM05D007176 ORTHO05D009050 2.0e-83 313.5 354 59.3
Sc13g0002490 Simmondsia chinensis HOM05D007176 ORTHO05D009050 5.9e-83 312.0 353 65.2
Migut.K00028 Erythranthe guttata HOM05D007176 ORTHO05D009050 1.3e-82 310.8 354 59.9
FAN14G2546 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.7e-82 310.5 350 59.7
FAN02G0922 Fragaria x ananassa HOM05D007176 ORTHO05D009050 2.2e-82 310.1 350 60.0
TAR633G0683 Trochodendron aralioides HOM05D007176 ORTHO05D009050 2.2e-82 310.1 354 58.8
Hma1.2p1_0645F.1_g194890 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 6.5e-82 308.5 347 59.7
QL07p025011 Quercus lobata HOM05D007176 ORTHO05D009050 1.1e-81 307.8 345 58.8
Eucgr.K01865 Eucalyptus grandis HOM05D007176 ORTHO05D009050 1.4e-81 307.4 352 58.2
Lju124C23T17 Lonicera japonica HOM05D007176 ORTHO05D009050 4.2e-81 305.8 332 61.4
CiPaw.09G027300 Carya illinoinensis HOM05D007176 ORTHO05D009050 7.2e-81 305.1 346 59.2
FAN09G2372 Fragaria x ananassa HOM05D007176 ORTHO05D009050 2.7e-80 303.1 350 58.6
FAN05G5781 Fragaria x ananassa HOM05D007176 ORTHO05D009050 6.1e-80 302.0 356 59.0
EL10Ac3g06857 Beta vulgaris HOM05D007176 ORTHO05D009050 1.4e-79 300.8 358 57.3
ECA247G1245 Erigeron canadensis HOM05D007176 ORTHO05D009050 3.9e-79 299.3 346 57.8
GSVIVG01033441001 Vitis vinifera HOM05D007176 ORTHO05D009050 5.2e-79 298.9 332 61.1
arahy.Tifrunner.gnm1.ann1.5B5G66 Arachis hypogaea HOM05D007176 ORTHO05D009050 1.3e-77 294.3 361 56.8
HanXRQChr10g0300591 Helianthus annuus HOM05D007176 ORTHO05D009050 8.2e-77 291.6 348 57.8
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 1.1e-76 291.2 337 49.0
COL.COLO4_29390 Corchorus olitorius HOM05D007176 ORTHO05D009050 1.8e-76 290.4 334 60.2
Lj5g0009846 Lotus japonicus HOM05D007176 ORTHO05D009050 7.0e-76 288.5 350 57.4
Prupe.7G084400 Prunus persica HOM05D007176 ORTHO05D009050 2.0e-75 287.0 354 56.8
CANSAT64G0938 Cannabis sativa HOM05D007176 ORTHO05D009050 2.6e-75 286.6 346 56.9
Sopen06g001340 Solanum pennellii HOM05D007176 ORTHO05D009050 4.5e-75 285.8 344 57.0
SalBow1G6257 Salvia bowleyana HOM05D007176 ORTHO05D009050 1.0e-74 284.6 362 61.6
arahy.Tifrunner.gnm1.ann1.I5CDLA Arachis hypogaea HOM05D007176 ORTHO05D009050 3.8e-74 282.7 371 54.7
BolC4t24963H Brassica oleracea HOM05D000032 ORTHO05D001620 5.0e-74 282.3 277 78.0
Potri.006G195800 Populus trichocarpa HOM05D007176 ORTHO05D009050 2.1e-72 276.9 356 54.8
C04p33960 Brassica napus HOM05D007176 ORTHO05D009050 2.7e-72 276.6 277 77.6
Medtr1g054625 Medicago truncatula HOM05D007176 ORTHO05D009050 4.7e-72 275.8 348 62.4
Gohir.D04G094700 Gossypium hirsutum HOM05D007176 ORTHO05D009050 6.1e-72 275.4 277 65.0
Cpa.g.sc85.35 Carica papaya HOM05D007176 ORTHO05D009050 8.0e-72 275.0 346 57.2
CDE04G3485 Ceratophyllum demersum HOM05D007176 ORTHO05D009050 8.0e-72 275.0 352 55.1
PGR142G3952 Punica granatum HOM05D007176 ORTHO05D009050 2.3e-71 273.5 353 56.1
Glyma.09G105500 Glycine max HOM05D007176 ORTHO05D009050 2.2e-69 266.9 351 61.8
Ca_03573_v3 Cicer arietinum L. HOM05D007176 ORTHO05D009050 2.8e-69 266.5 357 60.5
VMungo0720G0788 Vigna mungo HOM05D007176 ORTHO05D009050 3.7e-69 266.2 402 50.5
DCAR_019856 Daucus carota HOM05D007176 ORTHO05D009050 6.3e-69 265.4 335 46.3
MD12G1053200 Malus domestica HOM05D007176 ORTHO05D009050 8.2e-69 265.0 356 54.5
TPR.G19346 Trifolium pratense HOM05D007176 ORTHO05D009050 1.1e-68 264.6 377 51.7
CSS0044198 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 3.1e-68 263.1 347 55.3
Sabra06G0150500 Salix brachista HOM05D007176 ORTHO05D009050 4.1e-68 262.7 355 53.2
AUR62032747 Chenopodium quinoa HOM05D007176 ORTHO05D009050 5.3e-68 262.3 332 64.2
Rhsim04G0094400 Rhododendron simsii HOM05D007176 ORTHO05D009050 7.0e-68 261.9 353 53.5
PSO675G7508 Papaver somniferum HOM05D007176 ORTHO05D009050 1.6e-67 260.8 281 64.1
Lsat_1_v5_gn_9_26900 Lactuca sativa HOM05D007176 ORTHO05D009050 2.9e-66 256.5 347 49.0
Gorai.009G392400 Gossypium raimondii HOM05D007176 ORTHO05D009050 8.5e-66 255.0 330 54.8
A04p02540 Brassica napus HOM05D000032 ORTHO05D001620 1.9e-65 253.8 277 68.2
Haze_20048 Corylus avellana HOM05D007176 ORTHO05D009050 4.2e-65 252.7 407 41.3
Haze_20055 Corylus avellana HOM05D007176 ORTHO05D009050 4.2e-65 252.7 407 41.3
Hma1.2p1_0645F.1_g194900 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 2.1e-64 250.4 280 62.1
vmacro22113 Vaccinium macrocarpon HOM05D007176 ORTHO05D009050 8.0e-64 248.4 381 41.2
PSO541G4948 Papaver somniferum HOM05D007176 ORTHO05D009050 1.0e-63 248.1 281 61.9
CSS0035640 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 2.0e-62 243.8 357 52.7
Os02g0281150 Oryza sativa ssp. japonica HOM05D007176 ORTHO05D009050 5.7e-62 242.3 344 50.9
Ciclev10012430m.g Citrus clementina HOM05D007176 ORTHO05D009050 9.8e-62 241.5 187 66.3
Ah.13g075580 Amaranthus hybridus HOM05D007176 ORTHO05D009050 1.4e-60 237.7 280 59.3
Aqoxy279s002 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 3.1e-60 236.5 348 57.5
Aqoxy2G00051 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 3.1e-60 236.5 348 57.5
Cc06_g15630 Coffea canephora HOM05D007176 ORTHO05D009050 5.4e-60 235.7 349 52.1
PGSC0003DMG400029168 Solanum tuberosum HOM05D007176 ORTHO05D009050 7.0e-60 235.3 344 51.7
HPP92_010126 Vanilla planifolia HOM05D007176 ORTHO05D009050 4.5e-59 232.6 280 59.6
Peaxi162Scf00258g00925 Petunia axillaris HOM05D007176 ORTHO05D009050 7.7e-59 231.9 350 50.0
CAN.G111.5 Capsicum annuum HOM05D007176 ORTHO05D009050 3.8e-58 229.6 344 50.6
Solyc06g005380.3 Solanum lycopersicum HOM05D007176 ORTHO05D009050 8.6e-58 228.4 344 50.6
Actinidia17284 Actinidia chinensis HOM05D007176 ORTHO05D009050 1.9e-57 227.3 347 45.2
SGA_v2.0_scaffold274G46490 Striga asiatica HOM05D007176 ORTHO05D009050 1.0e-55 221.5 163 66.3
Nitab4.5_0008255g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 5.2e-55 219.2 350 39.7
Lalb_Chr02g0153821 Lupinus albus HOM05D007176 ORTHO05D009050 8.9e-55 218.4 356 48.3
Atru.BG.213.p Acer truncatum HOM05D007176 ORTHO05D009050 9.8e-54 214.9 342 51.8
SMO118G0524 Selaginella moellendorffii HOM05D007176 ORTHO05D009050 2.0e-51 207.2 339 46.9
Pp3c23_2930 Physcomitrium patens HOM05D007176 ORTHO05D009050 8.6e-50 201.8 352 48.3
Zm00001eb237210 Zea mays HOM05D007176 ORTHO05D009050 3.4e-46 189.9 344 45.6
Psat6g088000 Pisum sativum HOM05D007176 ORTHO05D009050 6.0e-43 179.1 296 57.1
SEGI_09769 Sequoiadendron giganteum HOM05D007176 ORTHO05D009050 2.3e-42 177.2 288 50.7
Nitab4.5_0000009g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 5.2e-39 166.0 417 32.4
ATR0001G043 Amborella trichopoda HOM05D007176 ORTHO05D009050 2.6e-38 163.7 186 61.8
Atru.chr8.1185 Acer truncatum HOM05D007176 ORTHO05D009050 5.8e-38 162.5 257 55.3
Phvul.007G261900 Phaseolus vulgaris HOM05D007176 ORTHO05D009050 8.3e-37 158.7 145 57.2
unitig_736.g22301 Utricularia gibba HOM05D007176 ORTHO05D009050 1.3e-34 151.4 407 39.6
AagrBONN_evm.TU.Sc2ySwM_228.1251 Anthoceros agrestis HOM05D007176 ORTHO05D009050 4.0e-31 139.8 347 36.3
HanXRQChr05g0140621 Helianthus annuus HOM05D007176 ORTHO05D009050 1.9e-28 131.0 210 45.2
HanXRQChr10g0316231 Helianthus annuus HOM05D007176 ORTHO05D009050 5.4e-28 129.4 210 44.8
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 1.0e-26 125.2 273 31.1
Hund24823 Selenicereus undatus HOM05D007176 ORTHO05D009050 1.7e-26 124.4 187 39.6
Mapoly0209s0007 Marchantia polymorpha HOM05D007176 ORTHO05D009050 3.0e-26 123.6 131 67.9
arahy.Tifrunner.gnm1.ann1.0S64XP Arachis hypogaea HOM05D007176 ORTHO05D009050 4.7e-24 116.3 288 42.4
AUR62015309 Chenopodium quinoa HOM05D007176 ORTHO05D009050 8.9e-23 112.1 110 77.3
Hund24819 Selenicereus undatus HOM05D007176 ORTHO05D001610 1.1e-15 88.6 128 40.6
Medtr3g074570 Medicago truncatula HOM05D001219 ORTHO05D001017 2.1e-08 64.3 146 26.7
Ah.15g090380 Amaranthus hybridus HOM05D002125 ORTHO05D002105 4.0e-07 60.1 212 25.9
EL10Ac7g16789 Beta vulgaris HOM05D002125 ORTHO05D002105 4.0e-07 60.1 238 22.7
Gohir.A03G025000 Gossypium hirsutum HOM05D002125 ORTHO05D002105 4.0e-07 60.1 211 35.1
VMungo0647G0746 Vigna mungo HOM05D002125 ORTHO05D002105 4.0e-07 60.1 235 26.0
MELO3C025685.2 Cucumis melo HOM05D002125 ORTHO05D002105 5.3e-07 59.7 214 40.2
Ah.08g209960 Amaranthus hybridus HOM05D002125 ORTHO05D002105 6.9e-07 59.3 238 22.3
PSO573G0021 Papaver somniferum HOM05D005998 ORTHO05D007664 6.9e-07 59.3 105 33.3
EL10Ac5g10571 Beta vulgaris HOM05D005998 ORTHO05D007664 9.0e-07 58.9 110 31.8
Thecc.09G359000 Theobroma cacao HOM05D002125 ORTHO05D002105 9.0e-07 58.9 214 32.7
ECA236G1847 Erigeron canadensis HOM05D005998 ORTHO05D007664 1.5e-06 58.2 128 28.1
Dinv27902 Davidia involucrata HOM05D002813 ORTHO05D003203 2.6e-06 57.4 74 41.9
Gohir.A05G046700 Gossypium hirsutum HOM05D002813 ORTHO05D003203 3.4e-06 57.0 254 22.8
Nn3g18826 Nelumbo nucifera HOM05D001818 ORTHO05D001780 3.4e-06 57.0 139 29.5
Phvul.008G251200 Phaseolus vulgaris HOM05D002125 ORTHO05D002105 5.8e-06 56.2 235 38.3
BcaB01g06117 Brassica carinata HOM05D002125 ORTHO05D002105 7.6e-06 55.8 217 27.6
C03p00270 Brassica napus HOM05D002125 ORTHO05D002105 7.6e-06 55.8 217 27.6
BolC3t12601H Brassica oleracea HOM05D002125 ORTHO05D002105 7.6e-06 55.8 217 27.6
MBI15_g03640_MAGBIO Magnolia biondii HOM05D002125 ORTHO05D002105 7.6e-06 55.8 118 28.0
Sed0011152 Sechium edule HOM05D002125 ORTHO05D002105 9.9e-06 55.5 213 35.7


User provided reference genes

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