Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 8.1e-130 467.2 262 100.0
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 3.4e-128 461.8 262 98.5
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 5.8e-128 461.1 262 98.1
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 9.9e-128 460.3 262 98.1
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 9.9e-128 460.3 262 98.1
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 9.9e-128 460.3 262 98.1
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 9.9e-128 460.3 262 98.1
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 2.2e-127 459.1 262 97.7
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 2.2e-127 459.1 262 97.7
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 2.2e-127 459.1 262 97.7
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 2.2e-127 459.1 262 97.7
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 2.9e-127 458.8 262 97.7
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 2.9e-127 458.8 262 97.7
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 2.9e-127 458.8 262 97.7
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 4.9e-127 458.0 262 97.3
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 6.4e-127 457.6 262 97.3
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 1.9e-126 456.1 262 97.3
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 3.2e-126 455.3 262 93.5
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 5.4e-126 454.5 263 93.9
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 5.4e-126 454.5 263 97.3
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 5.4e-126 454.5 263 97.3
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 5.4e-126 454.5 263 97.3
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 1.7e-124 449.5 262 95.0
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 85.5
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 84.7
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 2.2e-111 406.0 262 81.3
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 3.8e-111 405.2 262 80.9
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 8.4e-111 404.1 262 80.5
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.9e-110 402.9 262 79.8
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 1.9e-110 402.9 262 80.5
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.9e-110 402.9 262 80.5
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.9e-110 402.9 262 80.5
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 2.5e-110 402.5 262 79.8
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 3.2e-110 402.1 262 79.8
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 4.2e-110 401.7 262 79.8
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.2e-110 401.7 262 79.8
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.2e-110 401.7 262 79.8
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 4.2e-110 401.7 262 79.8
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 5.5e-110 401.4 262 80.2
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 7.1e-110 401.0 262 79.4
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 7.1e-110 401.0 262 79.0
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 7.1e-110 401.0 262 79.4
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 9.3e-110 400.6 262 79.4
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 9.3e-110 400.6 262 79.4
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 9.3e-110 400.6 262 79.4
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 9.3e-110 400.6 262 79.8
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.2e-109 400.2 262 79.8
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 1.2e-109 400.2 262 79.8
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.2e-109 400.2 262 79.0
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.2e-109 400.2 262 79.4
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 1.2e-109 400.2 262 79.8
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.6e-109 399.8 262 79.4
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 2.1e-109 399.4 262 80.2
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 2.1e-109 399.4 262 78.6
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 80.2
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 79.4
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 78.6
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.5e-109 398.7 262 79.0
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 7.9e-109 397.5 262 80.5
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 7.9e-109 397.5 262 80.2
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 7.9e-109 397.5 262 78.2
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.3e-108 396.7 262 78.6
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 1.3e-108 396.7 262 79.4
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 1.8e-108 396.4 262 79.8
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 1.8e-108 396.4 262 79.4
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.3e-108 396.0 262 79.0
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 2.3e-108 396.0 262 79.8
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 3.9e-108 395.2 262 79.0
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 77.9
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 6.7e-108 394.4 262 79.8
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 6.7e-108 394.4 262 78.6
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 6.7e-108 394.4 262 78.6
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 8.7e-108 394.0 262 78.2
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 79.0
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 1.1e-107 393.7 261 78.5
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 78.2
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 80.2
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 80.2
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 78.6
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 79.0
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 3.3e-107 392.1 263 78.7
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 3.3e-107 392.1 263 78.7
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 79.4
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 7.4e-107 391.0 262 79.0
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 7.4e-107 391.0 262 77.5
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 78.6
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.6e-106 389.8 262 77.9
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 3.7e-106 388.7 262 78.6
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 3.7e-106 388.7 264 78.8
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 4.8e-106 388.3 263 78.3
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 4.8e-106 388.3 262 77.5
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 4.8e-106 388.3 262 76.3
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 4.8e-106 388.3 262 76.7
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 6.2e-106 387.9 262 77.1
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 8.2e-106 387.5 262 78.6
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 1.1e-105 387.1 262 77.5
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.4e-105 386.7 262 78.2
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.8e-105 386.3 262 76.7
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.8e-105 386.3 262 78.2
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 3.1e-105 385.6 259 78.4
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 3.1e-105 385.6 262 76.3
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 5.3e-105 384.8 262 77.1
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 6.9e-105 384.4 262 77.5
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 9.0e-105 384.0 262 77.1
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 1.2e-104 383.6 263 76.8
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.2e-104 383.6 262 77.9
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.5e-104 383.3 253 78.7
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.0e-104 382.9 262 76.7
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 2.0e-104 382.9 262 74.8
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.6e-104 382.5 264 76.5
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 5.8e-104 381.3 264 77.7
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 3.8e-103 378.6 262 76.0
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 4.9e-103 378.3 262 76.0
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 7.1e-102 374.4 262 76.3
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 7.1e-102 374.4 247 80.2
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 7.1e-102 374.4 263 75.7
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 2.7e-101 372.5 256 77.0
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 3.5e-101 372.1 270 73.7
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 6.0e-101 371.3 270 74.8
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 7.9e-101 370.9 247 79.4
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 1.1e-99 367.1 262 74.4
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 1.9e-99 366.3 246 78.9
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 1.9e-99 366.3 262 74.8
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 3.7e-98 362.1 263 74.9
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 6.3e-98 361.3 263 74.5
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 3.1e-97 359.0 263 74.5
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 6.9e-97 357.8 263 73.8
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 9.0e-97 357.5 263 74.1
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 2.5e-94 349.4 248 75.0
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 1.6e-93 346.7 262 72.1
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 4.6e-93 345.1 249 71.9
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 2.3e-92 342.8 262 70.2
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 2.5e-91 339.3 263 70.7
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 7.4e-91 337.8 264 70.8
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.1e-89 334.0 214 85.5
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 1.4e-89 333.6 218 80.7
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.0e-88 329.7 235 72.8
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 1.3e-87 327.0 241 73.4
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 3.8e-87 325.5 238 69.7
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 1.4e-86 323.6 210 80.0
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 2.5e-86 322.8 226 73.9
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 2.3e-84 316.2 223 72.6
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 3.0e-84 315.8 242 66.9
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 9.7e-83 310.8 263 70.7
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 9.7e-83 310.8 266 65.4
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.2e-82 309.7 262 66.0
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 8.0e-77 291.2 267 59.9
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 3.1e-73 279.3 232 60.8
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 4.1e-73 278.9 234 62.0
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 3.5e-72 275.8 249 63.5
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.0e-71 274.2 249 62.2
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 8.5e-71 271.2 204 71.6
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 2.7e-69 266.2 208 68.3
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 4.4e-67 258.8 247 58.7
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.8e-66 256.1 262 58.8
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 2.7e-64 249.6 270 53.7
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 1.6e-61 240.4 209 60.8
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 3.6e-61 239.2 138 94.9
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 6.8e-52 208.4 234 55.1
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 3.7e-50 202.6 245 49.0
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 1.8e-49 200.3 244 45.5
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.9e-46 190.3 130 72.3
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.2e-43 181.0 120 75.8
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.9e-42 176.4 118 78.8
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 4.6e-40 169.1 179 54.2
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 9.8e-35 151.4 192 47.9
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 4.4e-27 125.9 127 55.9
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.7e-26 124.0 96 66.7
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 1.7e-18 97.4 57 84.2


User provided reference genes

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