Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g03750 Schrenkiella parvula HOM05D006283 ORTHO05D007727 2.1e-160 568.9 273 100.0
BraA07t30108Z Brassica rapa HOM05D006283 ORTHO05D007727 2.1e-152 542.3 273 94.9
A07p24630 Brassica napus HOM05D006283 ORTHO05D007727 1.7e-151 539.3 273 93.8
C06p26110 Brassica napus HOM05D006283 ORTHO05D007727 3.0e-151 538.5 273 93.8
BolC6t37776H Brassica oleracea HOM05D006283 ORTHO05D007727 1.9e-150 535.8 273 93.8
Thhalv10006168m.g Eutrema salsugineum HOM05D006283 ORTHO05D007727 9.6e-150 533.5 270 93.3
AL5G41290 Arabidopsis lyrata HOM05D006283 ORTHO05D007727 2.1e-149 532.3 273 91.9
CARHR169780 Cardamine hirsuta HOM05D006283 ORTHO05D007727 2.4e-148 528.9 273 91.6
AT3G59390 Arabidopsis thaliana HOM05D006283 ORTHO05D007727 1.4e-145 519.6 274 89.8
Carub.0005s2613 Capsella rubella HOM05D006283 ORTHO05D007727 5.1e-143 511.1 274 88.0
Aa31LG10G13740 Aethionema arabicum HOM05D006283 ORTHO05D007727 1.0e-135 486.9 273 83.2
THA.LOC104803704 Tarenaya hassleriana HOM05D006283 ORTHO05D007727 1.1e-134 483.4 273 84.2
BcaB02g07471 Brassica carinata HOM05D006283 ORTHO05D007727 1.1e-132 476.9 256 91.0
BcaC08g44981 Brassica carinata HOM05D006283 ORTHO05D007727 3.1e-132 475.3 256 90.2
Manes.11G120300 Manihot esculenta HOM05D006283 ORTHO05D007727 6.7e-119 431.0 273 73.6
CANSAT78G1066 Cannabis sativa HOM05D006283 ORTHO05D007727 1.8e-116 422.9 273 72.9
CiPaw.02G054900 Carya illinoinensis HOM05D006283 ORTHO05D007727 5.3e-116 421.4 273 73.3
Atru.chr3.1494 Acer truncatum HOM05D006283 ORTHO05D007727 2.6e-115 419.1 273 71.4
Ciclev10021635m.g Citrus clementina HOM05D006283 ORTHO05D007727 5.5e-113 411.4 273 70.7
Gohir.D10G129700 Gossypium hirsutum HOM05D006283 ORTHO05D007727 5.5e-113 411.4 250 73.6
Gorai.011G143000 Gossypium raimondii HOM05D006283 ORTHO05D007727 5.5e-113 411.4 250 73.6
Gohir.A10G137000 Gossypium hirsutum HOM05D006283 ORTHO05D007727 9.4e-113 410.6 250 74.0
Hma1.2p1_0847F.1_g227833 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.6e-112 409.8 245 74.7
Dinv22729 Davidia involucrata HOM05D006283 ORTHO05D007727 6.1e-112 407.9 267 70.4
Prupe.1G192800 Prunus persica HOM05D006283 ORTHO05D007727 1.0e-111 407.1 273 70.3
MD04G1040100 Malus domestica HOM05D006283 ORTHO05D007727 3.9e-111 405.2 272 69.9
Cc03_g13090 Coffea canephora HOM05D006283 ORTHO05D007727 5.1e-111 404.8 270 69.3
Thecc.04G180000 Theobroma cacao HOM05D006283 ORTHO05D007727 6.7e-111 404.4 275 69.5
TAR362G0864 Trochodendron aralioides HOM05D006283 ORTHO05D007727 6.7e-111 404.4 268 70.5
Actinidia35975 Actinidia chinensis HOM05D006283 ORTHO05D007727 8.8e-111 404.1 267 71.9
RcHm_v2.0_Chr4g0406391 Rosa chinensis HOM05D006283 ORTHO05D007727 8.8e-111 404.1 252 71.8
Peaxi162Scf00126g00015 Petunia axillaris HOM05D006283 ORTHO05D007727 1.5e-110 403.3 261 70.5
Potri.019G051300 Populus trichocarpa HOM05D006283 ORTHO05D007727 2.6e-110 402.5 264 72.0
Eucgr.H00372 Eucalyptus grandis HOM05D006283 ORTHO05D007727 3.3e-110 402.1 273 68.1
Migut.N02075 Erythranthe guttata HOM05D006283 ORTHO05D007727 9.7e-110 400.6 250 71.2
TWI15G0224 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 9.7e-110 400.6 250 70.8
TWI15G1054 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 9.7e-110 400.6 250 70.8
FvH4_4g10770 Fragaria vesca HOM05D006283 ORTHO05D007727 2.8e-109 399.1 270 67.8
Lsat_1_v5_gn_4_30241 Lactuca sativa HOM05D006283 ORTHO05D007727 5.3e-108 394.8 274 66.8
PGR142G0689 Punica granatum HOM05D006283 ORTHO05D007727 5.3e-108 394.8 269 69.1
MELO3C017715.2 Cucumis melo HOM05D006283 ORTHO05D007727 3.5e-107 392.1 256 69.1
Glyma.11G127900 Glycine max HOM05D006283 ORTHO05D007727 3.5e-107 392.1 264 69.7
GSVIVG01010753001 Vitis vinifera HOM05D006283 ORTHO05D007727 3.5e-107 392.1 273 69.2
CsaV3_4G003450 Cucumis sativus L. HOM05D006283 ORTHO05D007727 5.9e-107 391.3 256 69.1
Actinidia34602 Actinidia chinensis HOM05D006283 ORTHO05D007727 1.7e-106 389.8 267 70.4
Ca_20784_v3 Cicer arietinum L. HOM05D006283 ORTHO05D007727 2.9e-106 389.0 272 67.6
VMungo1127G0333 Vigna mungo HOM05D006283 ORTHO05D007727 6.5e-106 387.9 250 71.2
MSTRG.9766 Avicennia marina HOM05D006283 ORTHO05D007727 1.4e-105 386.7 267 66.3
ECA234G3618 Erigeron canadensis HOM05D006283 ORTHO05D007727 7.2e-105 384.4 249 70.7
TPR.G34200 Trifolium pratense HOM05D006283 ORTHO05D007727 7.2e-105 384.4 248 70.2
HanXRQChr16g0525531 Helianthus annuus HOM05D006283 ORTHO05D007727 2.7e-104 382.5 249 70.3
Nn1g09881 Nelumbo nucifera HOM05D006283 ORTHO05D007727 3.6e-104 382.1 254 68.9
Solyc06g054450.3 Solanum lycopersicum HOM05D006283 ORTHO05D007727 5.2e-103 378.3 270 65.6
Sopen06g019520 Solanum pennellii HOM05D006283 ORTHO05D007727 8.8e-103 377.5 270 65.6
CAN.G1247.5 Capsicum annuum HOM05D006283 ORTHO05D007727 1.1e-102 377.1 268 65.7
Lj3g0020373 Lotus japonicus HOM05D006283 ORTHO05D007727 1.1e-102 377.1 264 67.8
PSO017G4585 Papaver somniferum HOM05D006283 ORTHO05D007727 1.1e-102 377.1 256 67.2
SalBow3G2028 Salvia bowleyana HOM05D006283 ORTHO05D007727 2.0e-102 376.3 270 64.4
PSO675G6362 Papaver somniferum HOM05D006283 ORTHO05D007727 2.6e-102 375.9 262 66.4
Phvul.011G054600 Phaseolus vulgaris HOM05D006283 ORTHO05D007727 2.6e-102 375.9 262 67.6
Medtr4g067140 Medicago truncatula HOM05D006283 ORTHO05D007727 5.7e-102 374.8 246 69.1
Rhsim09G0027900 Rhododendron simsii HOM05D006283 ORTHO05D007727 5.7e-102 374.8 285 63.9
Sed0010312 Sechium edule HOM05D006283 ORTHO05D007727 5.7e-102 374.8 273 62.6
Sed0022341 Sechium edule HOM05D006283 ORTHO05D007727 7.4e-102 374.4 274 64.2
Lalb_Chr01g0003171 Lupinus albus HOM05D006283 ORTHO05D007727 1.3e-101 373.6 248 68.5
Aqoxy2G04092 Aquilegia oxysepala HOM05D006283 ORTHO05D007727 6.3e-101 371.3 266 66.2
DCAR_029916 Daucus carota HOM05D006283 ORTHO05D007727 5.3e-100 368.2 271 61.6
Sc13g0006800 Simmondsia chinensis HOM05D006283 ORTHO05D007727 1.7e-98 363.2 290 60.7
Nitab4.5_0000130g0340 Nicotiana tabacum HOM05D006283 ORTHO05D007727 1.1e-97 360.5 253 66.0
COL.COLO4_07661 Corchorus olitorius HOM05D006283 ORTHO05D007727 7.2e-97 357.8 252 67.9
Lalb_Chr03g0026141 Lupinus albus HOM05D006283 ORTHO05D007727 2.7e-96 355.9 251 64.1
Duzib151G0050 Durio zibethinus HOM05D006283 ORTHO05D007727 2.3e-95 352.8 244 68.4
FAN12G2405 Fragaria x ananassa HOM05D006283 ORTHO05D007727 1.2e-94 350.5 254 63.8
Zm00001eb406800 Zea mays HOM05D006283 ORTHO05D007727 7.0e-92 341.3 253 60.9
Oeu034461.3 Olea europaea HOM05D006283 ORTHO05D007727 1.6e-91 340.1 266 62.8
PGSC0003DMG400030791 Solanum tuberosum HOM05D006283 ORTHO05D007727 2.7e-91 339.3 222 69.8
Haze_01514 Corylus avellana HOM05D006283 ORTHO05D007727 2.0e-86 323.2 291 57.4
arahy.Tifrunner.gnm1.ann1.9EYB94 Arachis hypogaea HOM05D006283 ORTHO05D007727 9.8e-86 320.9 241 63.1
arahy.Tifrunner.gnm1.ann1.7GR0QN Arachis hypogaea HOM05D006283 ORTHO05D007727 1.7e-85 320.1 242 62.4
unitig_747.g21679 Utricularia gibba HOM05D006283 ORTHO05D007727 3.1e-84 315.8 236 61.0
CDE08G0087 Ceratophyllum demersum HOM05D006283 ORTHO05D007727 1.2e-83 313.9 235 63.0
EL10Ac3g05930 Beta vulgaris HOM05D006283 ORTHO05D007727 1.1e-81 307.4 235 62.1
HPP92_009172 Vanilla planifolia HOM05D006283 ORTHO05D007727 1.0e-79 300.8 235 60.0
Hund12011 Selenicereus undatus HOM05D006283 ORTHO05D007727 8.9e-79 297.7 194 70.1
Pp3c25_2030 Physcomitrium patens HOM05D006283 ORTHO05D007727 5.4e-76 288.5 237 55.7
Duzib268G1109 Durio zibethinus HOM05D006283 ORTHO05D007727 1.5e-73 280.4 175 71.4
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 3.3e-73 279.3 192 66.7
Mapoly0093s0081 Marchantia polymorpha HOM05D006283 ORTHO05D007727 1.2e-72 277.3 234 51.3
SGA_v2.0_scaffold12G06158 Striga asiatica HOM05D006283 ORTHO05D007727 2.8e-72 276.2 269 54.3
SMO119G0098 Selaginella moellendorffii HOM05D006283 ORTHO05D007727 3.7e-69 265.8 260 46.9
AUR62002299 Chenopodium quinoa HOM05D006283 ORTHO05D007727 1.1e-68 264.2 183 66.1
Glyma.12G052600 Glycine max HOM05D006283 ORTHO05D007727 1.9e-65 253.4 185 65.9
QL10p048744 Quercus lobata HOM05D006283 ORTHO05D007727 4.7e-64 248.8 163 73.0
Lj3A196G22 Lonicera japonica HOM05D006283 ORTHO05D007727 3.3e-57 226.1 136 72.8
Sabra19G0057300 Salix brachista HOM05D006283 ORTHO05D007727 2.4e-52 209.9 144 68.1
SEGI_31631 Sequoiadendron giganteum HOM05D006283 ORTHO05D007727 1.5e-49 200.7 160 56.9
RcHm_v2.0_Chr4g0406831 Rosa chinensis HOM05D006283 ORTHO05D007727 1.6e-48 197.2 134 64.2
ATR0824G015 Amborella trichopoda HOM05D006283 ORTHO05D007727 3.1e-47 193.0 136 65.4
Hma1.2p1_0639F.1_g194055 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 4.0e-47 192.6 131 67.9
Hma1.2p1_0847F.1_g227840 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 4.0e-47 192.6 131 67.9
FAN12G0556 Fragaria x ananassa HOM05D006283 ORTHO05D007727 5.2e-47 192.2 129 63.6
FAN07G2518 Fragaria x ananassa HOM05D006283 ORTHO05D007727 6.4e-45 185.3 136 64.7
QL10p048749 Quercus lobata HOM05D006283 ORTHO05D007727 4.2e-44 182.6 111 73.9
vmacro00624 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 4.9e-37 159.1 140 56.4
Cre16.g673841 Chlamydomonas reinhardtii HOM05D006283 ORTHO05D007727 5.6e-33 145.6 236 33.9
Prupe.1G193700 Prunus persica HOM05D006283 ORTHO05D007727 3.6e-32 142.9 103 63.1
ClCG07G015660 Citrullus lanatus HOM05D006283 ORTHO05D007727 2.7e-27 126.7 245 37.1
Peaxi162Scf00126g00003 Petunia axillaris HOM05D006283 ORTHO05D007727 3.9e-26 122.9 111 55.0
Lj3A196T13 Lonicera japonica HOM05D006283 ORTHO05D007727 6.2e-24 115.5 95 57.9
RcHm_v2.0_Chr4g0406821 Rosa chinensis HOM05D006283 ORTHO05D007727 3.1e-23 113.2 62 82.3
Psat7g091240 Pisum sativum HOM05D006283 ORTHO05D007727 4.0e-23 112.8 156 41.7
HanXRQChr16g0525261 Helianthus annuus HOM05D006283 ORTHO05D007727 1.3e-18 97.8 68 69.1
C09p49630 Brassica napus HOM05D006283 ORTHO05D007727 3.3e-17 93.2 59 76.3
BolC3t18408H Brassica oleracea HOM05D006283 ORTHO05D007727 5.7e-17 92.4 53 83.0
Hma1.2p1_0639F.1_g194050 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 4.1e-15 86.3 44 84.1
Hma1.2p1_0847F.1_g227839 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 4.1e-15 86.3 44 84.1
vmacro00625 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 1.2e-14 84.7 60 68.3
BcaC02g08202 Brassica carinata HOM05D000127 ORTHO05D000243 8.4e-13 78.6 38 92.1
Os11g0267100 Oryza sativa ssp. japonica HOM05D006283 ORTHO05D007727 1.1e-12 78.2 59 59.3
PRCOL_00001858 Prasinoderma coloniale HOM05D006283 ORTHO05D007727 2.7e-11 73.6 146 28.1
Cfa015166 Carpinus fangiana HOM05D006283 ORTHO05D007727 1.9e-09 67.4 38 78.9
CSS0010514 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 3.7e-08 63.2 35 77.1
CSS0034877 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 3.7e-08 63.2 35 77.1
CSS0026672 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 4.8e-08 62.8 86 45.3
CSS0022675 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.8e-07 60.8 31 83.9


User provided reference genes

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