Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g03530 Schrenkiella parvula HOM05D004197 ORTHO05D004975 3.5e-64 248.1 120 100.0
BcaC07g40496 Brassica carinata HOM05D004197 ORTHO05D004975 3.9e-63 244.6 120 98.3
A09p51920 Brassica napus HOM05D004197 ORTHO05D004975 3.9e-63 244.6 120 98.3
C08p34650 Brassica napus HOM05D004197 ORTHO05D004975 3.9e-63 244.6 120 98.3
BolC8t51067H Brassica oleracea HOM05D004197 ORTHO05D004975 3.9e-63 244.6 120 98.3
BraA09t40628Z Brassica rapa HOM05D004197 ORTHO05D004975 3.9e-63 244.6 120 98.3
BcaC08g44998 Brassica carinata HOM05D004197 ORTHO05D004975 5.1e-63 244.2 120 98.3
A07p24720 Brassica napus HOM05D000455 ORTHO05D000434 5.1e-63 244.2 120 98.3
C06p26290 Brassica napus HOM05D000455 ORTHO05D000434 5.1e-63 244.2 120 98.3
BolC6t37793H Brassica oleracea HOM05D004197 ORTHO05D004975 5.1e-63 244.2 120 98.3
BraA07t30117Z Brassica rapa HOM05D004197 ORTHO05D004975 5.1e-63 244.2 120 98.3
BcaB02g07455 Brassica carinata HOM05D004197 ORTHO05D004975 6.7e-63 243.8 120 98.3
Thhalv10006316m.g Eutrema salsugineum HOM05D004197 ORTHO05D004975 2.5e-62 241.9 120 96.7
CARHR170020 Cardamine hirsuta HOM05D004197 ORTHO05D004975 5.6e-62 240.7 120 96.7
AL5G41720 Arabidopsis lyrata HOM05D004197 ORTHO05D004975 7.4e-62 240.4 120 96.7
Carub.0005s2637 Capsella rubella HOM05D004197 ORTHO05D004975 7.4e-62 240.4 120 96.7
AT3G59650 Arabidopsis thaliana HOM05D004197 ORTHO05D004975 9.6e-62 240.0 120 95.8
Aa31LG10G13940 Aethionema arabicum HOM05D004197 ORTHO05D004975 1.6e-61 239.2 120 95.8
Sp2g07880 Schrenkiella parvula HOM05D004197 ORTHO05D004975 9.0e-60 233.4 120 94.2
CiPaw.11G096400 Carya illinoinensis HOM05D004197 ORTHO05D004975 7.9e-56 220.3 120 85.0
Atru.chr12.1293 Acer truncatum HOM05D004197 ORTHO05D004975 3.0e-55 218.4 120 85.8
Phvul.003G238300 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 6.7e-55 217.2 120 84.2
Cpa.g.sc10.180 Carica papaya HOM05D004197 ORTHO05D004975 1.5e-54 216.1 120 84.2
Atru.chr4.2919 Acer truncatum HOM05D004197 ORTHO05D004975 1.9e-54 215.7 120 85.0
arahy.Tifrunner.gnm1.ann1.4JR04K Arachis hypogaea HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 83.3
arahy.Tifrunner.gnm1.ann1.5DCW4K Arachis hypogaea HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 83.3
Glyma.17G164900 Glycine max HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 82.5
Gohir.A10G143100 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 84.2
Gorai.011G136700 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 84.2
Gorai.012G053000 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 84.2
Lalb_Chr04g0253841 Lupinus albus HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 83.3
arahy.Tifrunner.gnm1.ann1.E9H45Q Arachis hypogaea HOM05D004197 ORTHO05D004975 3.3e-54 214.9 119 83.2
CSS0039414 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 3.3e-54 214.9 120 83.3
CSS0047181 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 3.3e-54 214.9 120 83.3
Thecc.04G166300 Theobroma cacao HOM05D004197 ORTHO05D004975 3.3e-54 214.9 120 82.5
Duzib151G0052 Durio zibethinus HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 82.5
Duzib212G0574 Durio zibethinus HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 82.5
PGR142G4086 Punica granatum HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 83.3
Gohir.A05G367700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 7.4e-54 213.8 120 83.3
VMungo0251G3068 Vigna mungo HOM05D004197 ORTHO05D004975 7.4e-54 213.8 120 82.5
Gohir.D10G123800 Gossypium hirsutum HOM05D004197 ORTHO05D004975 9.7e-54 213.4 120 83.3
Hma1.2p1_0307F.1_g119895 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 9.7e-54 213.4 120 83.3
Cfa015042 Carpinus fangiana HOM05D004197 ORTHO05D004975 1.3e-53 213.0 120 81.7
Eucgr.G02225 Eucalyptus grandis HOM05D004197 ORTHO05D004975 1.3e-53 213.0 120 81.7
Gohir.D04G047600 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.3e-53 213.0 120 83.3
QL10p055721 Quercus lobata HOM05D004197 ORTHO05D004975 1.3e-53 213.0 119 85.7
TWI32G1250 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 1.6e-53 212.6 120 82.5
Glyma.05G102000 Glycine max HOM05D004197 ORTHO05D004975 2.2e-53 212.2 120 82.5
THA.LOC104804007 Tarenaya hassleriana HOM05D004197 ORTHO05D004975 2.8e-53 211.8 120 81.7
Lalb_Chr10g0101191 Lupinus albus HOM05D004197 ORTHO05D004975 3.7e-53 211.5 120 80.0
Ah.13g073520 Amaranthus hybridus HOM05D004197 ORTHO05D004975 4.8e-53 211.1 120 81.7
ATR0733G162 Amborella trichopoda HOM05D004197 ORTHO05D004975 6.3e-53 210.7 120 80.8
CiPaw.12G066300 Carya illinoinensis HOM05D004197 ORTHO05D004975 6.3e-53 210.7 120 80.0
FvH4_7g06200 Fragaria vesca HOM05D004197 ORTHO05D004975 6.3e-53 210.7 120 85.0
RcHm_v2.0_Chr1g0333831 Rosa chinensis HOM05D004197 ORTHO05D004975 8.2e-53 210.3 120 84.2
CAN.G525.23 Capsicum annuum HOM05D004197 ORTHO05D004975 1.4e-52 209.5 120 81.7
Migut.F01587 Erythranthe guttata HOM05D004197 ORTHO05D004975 1.8e-52 209.1 120 80.8
FAN01G1948 Fragaria x ananassa HOM05D004197 ORTHO05D004975 1.8e-52 209.1 120 84.2
FAN06G1493 Fragaria x ananassa HOM05D004197 ORTHO05D004975 1.8e-52 209.1 120 84.2
HPP92_007604 Vanilla planifolia HOM05D004197 ORTHO05D004975 1.8e-52 209.1 120 79.2
Prupe.1G206900 Prunus persica HOM05D004197 ORTHO05D004975 2.4e-52 208.8 120 82.5
Ca_10539_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 3.1e-52 208.4 120 80.0
Ca_23424_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 3.1e-52 208.4 120 80.8
MELO3C017759.2 Cucumis melo HOM05D004197 ORTHO05D004975 3.1e-52 208.4 120 81.7
FAN03G3355 Fragaria x ananassa HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 83.3
Lj1g0017974 Lotus japonicus HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 79.2
Psat1g223520 Pisum sativum HOM05D004197 ORTHO05D004975 5.3e-52 207.6 120 79.2
Nitab4.5_0000902g0310 Nicotiana tabacum HOM05D004197 ORTHO05D004975 6.9e-52 207.2 120 80.0
Peaxi162Scf00196g00222 Petunia axillaris HOM05D004197 ORTHO05D004975 6.9e-52 207.2 120 79.2
Rhsim03G0176800 Rhododendron simsii HOM05D004197 ORTHO05D004975 6.9e-52 207.2 119 79.8
Solyc04g014390.3 Solanum lycopersicum HOM05D004197 ORTHO05D004975 6.9e-52 207.2 120 80.8
Sopen04g006520 Solanum pennellii HOM05D004197 ORTHO05D004975 6.9e-52 207.2 120 80.8
TPR.G16667 Trifolium pratense HOM05D004197 ORTHO05D004975 6.9e-52 207.2 119 79.8
Ciclev10022904m.g Citrus clementina HOM05D004197 ORTHO05D004975 9.0e-52 206.8 120 78.3
Phvul.010G124900 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 9.0e-52 206.8 111 85.6
MSTRG.27564 Avicennia marina HOM05D004197 ORTHO05D004975 1.2e-51 206.5 120 80.0
AUR62023799 Chenopodium quinoa HOM05D004197 ORTHO05D004975 1.2e-51 206.5 120 78.3
Cc02_g26370 Coffea canephora HOM05D004197 ORTHO05D004975 1.2e-51 206.5 120 80.8
Nn1g09691 Nelumbo nucifera HOM05D004197 ORTHO05D004975 1.2e-51 206.5 120 78.3
ECA240G1468 Erigeron canadensis HOM05D004197 ORTHO05D004975 1.5e-51 206.1 120 80.8
HanXRQChr10g0286001 Helianthus annuus HOM05D004197 ORTHO05D004975 1.5e-51 206.1 120 82.5
Os03g0207250 Oryza sativa ssp. japonica HOM05D004197 ORTHO05D004975 1.5e-51 206.1 120 81.7
Nitab4.5_0007872g0010 Nicotiana tabacum HOM05D004197 ORTHO05D004975 2.0e-51 205.7 120 79.2
GSVIVG01038138001 Vitis vinifera HOM05D004197 ORTHO05D004975 2.0e-51 205.7 120 80.0
Medtr8g022770 Medicago truncatula HOM05D004197 ORTHO05D004975 2.6e-51 205.3 120 79.2
Manes.06G021100 Manihot esculenta HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 78.3
QL04p073242 Quercus lobata HOM05D004197 ORTHO05D004975 3.4e-51 204.9 119 80.7
Sed0002539 Sechium edule HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 78.3
unitig_899.g14470 Utricularia gibba HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 77.5
SalBow6G6028 Salvia bowleyana HOM05D004197 ORTHO05D004975 4.5e-51 204.5 118 80.5
PSO832G1844 Papaver somniferum HOM05D004197 ORTHO05D004975 5.9e-51 204.1 119 79.0
EL10Ac3g06082 Beta vulgaris HOM05D004197 ORTHO05D004975 7.7e-51 203.8 120 77.5
Zm00001eb400580 Zea mays HOM05D004197 ORTHO05D004975 7.7e-51 203.8 120 80.8
Dinv33200 Davidia involucrata HOM05D004197 ORTHO05D004975 1.0e-50 203.4 119 78.2
Oeu016610.1 Olea europaea HOM05D004197 ORTHO05D004975 1.0e-50 203.4 120 77.5
PGSC0003DMG401023624 Solanum tuberosum HOM05D004197 ORTHO05D004975 1.0e-50 203.4 120 80.0
CANSAT80G2644 Cannabis sativa HOM05D004197 ORTHO05D004975 1.3e-50 203.0 120 79.2
ClCG07G015230 Citrullus lanatus HOM05D004197 ORTHO05D004975 1.7e-50 202.6 120 79.2
CsaV3_4G002820 Cucumis sativus L. HOM05D004197 ORTHO05D004975 1.7e-50 202.6 120 80.0
Lsat_1_v5_gn_6_33001 Lactuca sativa HOM05D004197 ORTHO05D004975 1.7e-50 202.6 120 80.8
Aqoxy7G00569 Aquilegia oxysepala HOM05D004197 ORTHO05D004975 2.2e-50 202.2 120 78.3
EL10Ac6g15364 Beta vulgaris HOM05D004197 ORTHO05D004975 2.9e-50 201.8 120 78.3
PSO017G5565 Papaver somniferum HOM05D004197 ORTHO05D004975 2.9e-50 201.8 119 78.2
PSO675G0737 Papaver somniferum HOM05D004197 ORTHO05D004975 2.9e-50 201.8 119 78.2
ECA247G1539 Erigeron canadensis HOM05D004197 ORTHO05D004975 3.8e-50 201.4 115 82.6
Lsat_1_v5_gn_5_190681 Lactuca sativa HOM05D004197 ORTHO05D004975 3.8e-50 201.4 120 80.0
Psat4g166320 Pisum sativum HOM05D004197 ORTHO05D004975 3.8e-50 201.4 120 75.8
Hund04335 Selenicereus undatus HOM05D004197 ORTHO05D004975 3.8e-50 201.4 120 76.7
CDE02G1869 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 5.0e-50 201.1 119 77.3
Cc03_g14030 Coffea canephora HOM05D004197 ORTHO05D004975 2.5e-49 198.7 120 80.0
PSO591G0183 Papaver somniferum HOM05D004197 ORTHO05D004975 4.2e-49 198.0 119 75.6
TWI34G1638 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 4.2e-49 198.0 144 69.4
MD08G1230600 Malus domestica HOM05D004197 ORTHO05D004975 5.5e-49 197.6 117 79.5
Potri.013G126200 Populus trichocarpa HOM05D004197 ORTHO05D004975 1.2e-48 196.4 120 76.7
TAR362G0244 Trochodendron aralioides HOM05D000090 ORTHO05D001584 2.7e-48 195.3 111 80.2
TAR629G0957 Trochodendron aralioides HOM05D004197 ORTHO05D004975 1.1e-46 189.9 110 80.0
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 7.4e-46 187.2 110 77.3
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 1.7e-45 186.0 110 78.2
C04p24770 Brassica napus HOM05D004197 ORTHO05D004975 2.8e-45 185.3 110 85.5
BolC4t23981H Brassica oleracea HOM05D004197 ORTHO05D004975 2.8e-45 185.3 110 85.5
FAN24G1973 Fragaria x ananassa HOM05D004197 ORTHO05D004975 3.7e-45 184.9 110 81.8
FvH4_2g13530 Fragaria vesca HOM05D004197 ORTHO05D004975 8.2e-45 183.7 112 81.2
QL04p093649 Quercus lobata HOM05D004197 ORTHO05D004975 1.4e-44 183.0 111 77.5
SGA_v2.0_scaffold49G18240 Striga asiatica HOM05D004197 ORTHO05D004975 1.8e-44 182.6 110 78.2
BcaC02g10824 Brassica carinata HOM05D004197 ORTHO05D004975 2.4e-44 182.2 110 84.5
arahy.Tifrunner.gnm1.ann1.XY21PC Arachis hypogaea HOM05D004197 ORTHO05D004975 1.9e-41 172.6 131 64.9
Lj3g0000340 Lotus japonicus HOM05D004197 ORTHO05D004975 7.2e-41 170.6 124 69.4
TAR493G0004 Trochodendron aralioides HOM05D004197 ORTHO05D004975 9.4e-41 170.2 107 75.7
SEGI_18755 Sequoiadendron giganteum HOM05D004197 ORTHO05D004975 2.3e-39 165.6 120 62.5
Gorai.004G083000 Gossypium raimondii HOM05D004197 ORTHO05D004975 3.0e-39 165.2 95 83.2
AUR62002389 Chenopodium quinoa HOM05D004197 ORTHO05D004975 3.9e-39 164.9 213 43.7
Mapoly0027s0066 Marchantia polymorpha HOM05D004197 ORTHO05D004975 5.1e-39 164.5 120 66.7
CARHR099320 Cardamine hirsuta HOM05D004197 ORTHO05D004975 2.0e-38 162.5 84 92.9
Gohir.D10G075200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 6.3e-37 157.5 91 82.4
Atru.chr12.1301 Acer truncatum HOM05D004197 ORTHO05D004975 8.2e-37 157.1 91 81.3
Gohir.D08G078000 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.4e-36 156.4 92 81.5
Pp3c1_20100 Physcomitrium patens HOM05D004197 ORTHO05D004975 1.8e-36 156.0 120 61.7
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 2.4e-36 155.6 95 76.8
Gohir.D02G135200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 4.1e-36 154.8 91 81.3
Atru.chr12.1273 Acer truncatum HOM05D004197 ORTHO05D004975 7.0e-36 154.1 92 79.3
HanXRQChr09g0264591 Helianthus annuus HOM05D004197 ORTHO05D004975 1.5e-35 152.9 94 78.7
Gorai.011G081000 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.0e-35 152.5 91 81.3
arahy.Tifrunner.gnm1.ann1.60591L Arachis hypogaea HOM05D004197 ORTHO05D004975 3.5e-35 151.8 136 61.8
Peaxi162Scf00474g00723 Petunia axillaris HOM05D004197 ORTHO05D004975 5.9e-35 151.0 120 62.5
SHI24203 Sapria himalayana HOM05D004197 ORTHO05D004975 5.9e-35 151.0 133 56.4
Gorai.005G151300 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.0e-34 150.2 91 78.0
Zm00001eb007240 Zea mays HOM05D004197 ORTHO05D004975 1.0e-34 150.2 91 79.1
Sabra13G0105500 Salix brachista HOM05D004197 ORTHO05D004975 2.9e-34 148.7 169 50.3
SalBow2G3321 Salvia bowleyana HOM05D004197 ORTHO05D004975 2.5e-33 145.6 89 77.5
Rhsim02G0084000 Rhododendron simsii HOM05D004197 ORTHO05D004975 7.2e-33 144.1 86 75.6
unitig_736.g22525 Utricularia gibba HOM05D000398 ORTHO05D000551 9.4e-33 143.7 86 73.3
DCAR_029674 Daucus carota HOM05D004197 ORTHO05D004975 1.2e-32 143.3 91 75.8
DCAR_009572 Daucus carota HOM05D004197 ORTHO05D004975 6.1e-32 141.0 91 74.7
TPR.G31074 Trifolium pratense HOM05D004197 ORTHO05D006502 8.8e-31 137.1 94 69.1
Gohir.D08G220700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 7.4e-30 134.0 77 81.8
Lsat_1_v5_gn_6_23540 Lactuca sativa HOM05D004197 ORTHO05D004975 4.1e-28 128.3 95 67.4
SMO347G0376 Selaginella moellendorffii HOM05D004197 ORTHO05D004975 1.9e-25 119.4 118 45.8
arahy.Tifrunner.gnm1.ann1.GGUP18 Arachis hypogaea HOM05D004197 ORTHO05D004975 7.2e-25 117.5 62 85.5
COL.COLO4_08144 Corchorus olitorius HOM05D004197 ORTHO05D004975 9.4e-25 117.1 62 85.5
Hma1.2p1_0150F.1_g066800 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 2.7e-24 115.5 62 83.9
vmacro16589 Vaccinium macrocarpon HOM05D004197 ORTHO05D004975 4.7e-24 114.8 62 82.3
Glyma.07G044001 Glycine max HOM05D004197 ORTHO05D004975 1.8e-23 112.8 91 65.9
Gorai.004G076200 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.5e-22 109.8 120 50.8
Cre06.g270650 Chlamydomonas reinhardtii HOM05D004197 ORTHO05D004975 1.3e-21 106.7 108 47.2
arahy.Tifrunner.gnm1.ann1.HJ8Q1I Arachis hypogaea HOM05D004197 ORTHO05D004975 3.5e-19 98.6 57 77.2
Gohir.D04G172540 Gossypium hirsutum HOM05D004197 ORTHO05D004975 6.5e-18 94.4 61 72.1
MCO09G643 Micromonas commoda HOM05D004197 ORTHO05D004975 1.9e-17 92.8 115 40.0
Gorai.012G161800 Gossypium raimondii HOM05D004197 ORTHO05D004975 3.2e-17 92.0 61 70.5
Lsat_1_v5_gn_2_131080 Lactuca sativa HOM05D004197 ORTHO05D004975 4.2e-17 91.7 81 61.7
Gorai.004G234500 Gossypium raimondii HOM05D004197 ORTHO05D004975 8.8e-15 84.0 57 70.2
Actinidia27110 Actinidia chinensis HOM05D004197 ORTHO05D004975 1.6e-08 63.2 44 68.2
Thecc.10G088100 Theobroma cacao HOM05D004197 ORTHO05D004975 3.4e-06 55.5 35 71.4


User provided reference genes

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