Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g03300 Schrenkiella parvula HOM05D006197 ORTHO05D007718 2.8e-51 204.9 98 100.0
AL5G41940 Arabidopsis lyrata HOM05D006197 ORTHO05D007718 4.2e-47 191.0 98 92.9
AT3G59840 Arabidopsis thaliana HOM05D006197 ORTHO05D007718 4.2e-47 191.0 98 92.9
Carub.0005s2656 Capsella rubella HOM05D006197 ORTHO05D007718 4.2e-47 191.0 98 92.9
Thhalv10006335m.g Eutrema salsugineum HOM05D006197 ORTHO05D007718 9.3e-47 189.9 98 91.8
BcaB02g07441 Brassica carinata HOM05D006197 ORTHO05D007718 1.6e-46 189.1 98 91.8
CARHR170180 Cardamine hirsuta HOM05D006197 ORTHO05D007718 6.7e-45 183.7 98 91.8
BcaC08g45013 Brassica carinata HOM05D006197 ORTHO05D007718 5.7e-44 180.6 98 90.8
BolC6t37808H Brassica oleracea HOM05D006197 ORTHO05D007718 5.7e-44 180.6 98 90.8
BcaC07g40556 Brassica carinata HOM05D006197 ORTHO05D007718 9.7e-44 179.9 98 89.8
A09p52120 Brassica napus HOM05D006197 ORTHO05D007718 9.7e-44 179.9 98 89.8
C06p26450 Brassica napus HOM05D006197 ORTHO05D007718 1.3e-43 179.5 98 89.8
A07p24860 Brassica napus HOM05D006197 ORTHO05D007718 1.4e-42 176.0 99 89.9
BraA07t30130Z Brassica rapa HOM05D006197 ORTHO05D007718 1.4e-42 176.0 99 89.9
Aa31LG10G14080 Aethionema arabicum HOM05D006197 ORTHO05D007718 3.1e-42 174.9 98 85.7
BcaC07g40434 Brassica carinata HOM05D006197 ORTHO05D007718 6.9e-42 173.7 98 86.7
THA.LOC104819961 Tarenaya hassleriana HOM05D006197 ORTHO05D007718 6.5e-40 167.2 100 83.0
Cpa.g.sc6.409 Carica papaya HOM05D006197 ORTHO05D007718 3.7e-35 151.4 98 72.4
BolC8t51081H Brassica oleracea HOM05D000403 ORTHO05D004426 6.3e-35 150.6 93 79.6
Gohir.D08G180000 Gossypium hirsutum HOM05D006197 ORTHO05D007718 5.9e-33 144.1 98 71.4
Gorai.004G188500 Gossypium raimondii HOM05D006197 ORTHO05D007718 5.9e-33 144.1 98 71.4
Duzib205G0278 Durio zibethinus HOM05D006197 ORTHO05D007718 1.3e-32 142.9 98 69.4
Thecc.03G234100 Theobroma cacao HOM05D006197 ORTHO05D007718 2.2e-32 142.1 98 69.4
Gohir.A04G000300 Gossypium hirsutum HOM05D006197 ORTHO05D007718 3.8e-32 141.4 101 67.3
Duzib068G0126 Durio zibethinus HOM05D006197 ORTHO05D007718 5.0e-32 141.0 98 68.4
Gohir.A08G159600 Gossypium hirsutum HOM05D006197 ORTHO05D007718 5.0e-32 141.0 98 69.4
CiPaw.11G087500 Carya illinoinensis HOM05D006197 ORTHO05D007718 1.1e-31 139.8 100 69.0
Eucgr.E00313 Eucalyptus grandis HOM05D006197 ORTHO05D007718 1.9e-31 139.0 98 67.3
PGR042G3581 Punica granatum HOM05D006197 ORTHO05D007718 3.2e-31 138.3 100 70.0
COL.COLO4_17110 Corchorus olitorius HOM05D006197 ORTHO05D007718 4.2e-31 137.9 98 67.3
Gorai.008G229000 Gossypium raimondii HOM05D006197 ORTHO05D007718 9.4e-31 136.7 98 67.3
SalBow1G7863 Salvia bowleyana HOM05D006197 ORTHO05D007718 1.6e-30 136.0 101 70.3
Ciclev10033154m.g Citrus clementina HOM05D006197 ORTHO05D007718 4.7e-30 134.4 103 66.0
MD16G1269400 Malus domestica HOM05D006197 ORTHO05D007718 6.1e-30 134.0 101 67.3
MBI11_g07528_MAGBIO Magnolia biondii HOM05D006197 ORTHO05D007718 1.0e-29 133.3 102 66.7
Atru.chr6.1773 Acer truncatum HOM05D006197 ORTHO05D007718 3.0e-29 131.7 101 67.3
Haze_08298 Corylus avellana HOM05D006197 ORTHO05D007718 5.1e-29 131.0 100 65.0
Manes.15G173000 Manihot esculenta HOM05D006197 ORTHO05D007718 5.1e-29 131.0 101 66.3
TWI81G0993 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 5.1e-29 131.0 99 65.7
Gohir.D12G213400 Gossypium hirsutum HOM05D006197 ORTHO05D007718 6.7e-29 130.6 98 65.3
PGSC0003DMG400024214 Solanum tuberosum HOM05D006197 ORTHO05D007718 6.7e-29 130.6 107 65.4
Cfa012386 Carpinus fangiana HOM05D006197 ORTHO05D007718 1.1e-28 129.8 100 64.0
Sopen05g026900 Solanum pennellii HOM05D006197 ORTHO05D007718 1.1e-28 129.8 107 64.5
Sopen08g025860 Solanum pennellii HOM05D006197 ORTHO05D007718 1.1e-28 129.8 107 64.5
Nitab4.5_0006693g0020 Nicotiana tabacum HOM05D006197 ORTHO05D007718 2.6e-28 128.6 103 64.1
Prupe.5G046200 Prunus persica HOM05D006197 ORTHO05D007718 3.3e-28 128.3 99 66.7
Migut.N01790 Erythranthe guttata HOM05D006197 ORTHO05D007718 4.4e-28 127.9 105 64.8
GSVIVG01013230001 Vitis vinifera HOM05D006197 ORTHO05D007718 4.4e-28 127.9 102 65.7
CANSAT64G2368 Cannabis sativa HOM05D006197 ORTHO05D007718 5.7e-28 127.5 106 60.4
HanXRQChr08g0234831 Helianthus annuus HOM05D006197 ORTHO05D007718 5.7e-28 127.5 107 61.7
Potri.001G146700 Populus trichocarpa HOM05D006197 ORTHO05D007718 5.7e-28 127.5 101 65.3
Solyc08g077280.1 Solanum lycopersicum HOM05D006197 ORTHO05D007718 5.7e-28 127.5 107 63.6
Cc08_g01810 Coffea canephora HOM05D006197 ORTHO05D007718 9.7e-28 126.7 104 63.5
Cc00_g23310 Coffea canephora HOM05D006197 ORTHO05D007718 1.3e-27 126.3 104 62.5
Cc00_g30230 Coffea canephora HOM05D006197 ORTHO05D007718 1.3e-27 126.3 104 63.5
Dinv28915 Davidia involucrata HOM05D006197 ORTHO05D007718 1.7e-27 125.9 104 62.5
Nitab4.5_0002055g0120 Nicotiana tabacum HOM05D006197 ORTHO05D007718 1.7e-27 125.9 106 63.2
Lsat_1_v5_gn_6_66400 Lactuca sativa HOM05D006197 ORTHO05D007718 3.7e-27 124.8 111 56.8
MBI02_g29718_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009071 4.8e-27 124.4 97 60.8
Nn1g03717 Nelumbo nucifera HOM05D006197 ORTHO05D007718 4.8e-27 124.4 99 62.6
TWI15G0656 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 4.8e-27 124.4 104 66.3
Cc00_g26570 Coffea canephora HOM05D006197 ORTHO05D007718 6.3e-27 124.0 103 61.2
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 6.3e-27 124.0 102 59.8
Glyma.11G041000 Glycine max HOM05D006197 ORTHO05D007718 1.1e-26 123.2 100 63.0
RcHm_v2.0_Chr7g0208331 Rosa chinensis HOM05D006197 ORTHO05D007718 1.1e-26 123.2 98 62.2
CSS0031892 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 1.4e-26 122.9 107 60.7
CSS0033989 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 1.4e-26 122.9 107 60.7
CSS0037645 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 1.4e-26 122.9 107 60.7
Sabra01G0115400 Salix brachista HOM05D006197 ORTHO05D007718 1.4e-26 122.9 101 64.4
Hma1.2p1_0311F.1_g121310 Hydrangea macrophylla HOM05D006197 ORTHO05D007718 1.8e-26 122.5 101 60.4
FAN04G1051 Fragaria x ananassa HOM05D006197 ORTHO05D007718 2.4e-26 122.1 99 62.6
Oeu014592.2 Olea europaea HOM05D006197 ORTHO05D007718 2.4e-26 122.1 104 61.5
arahy.Tifrunner.gnm1.ann1.M9L3KI Arachis hypogaea HOM05D006197 ORTHO05D007718 4.1e-26 121.3 105 61.9
arahy.Tifrunner.gnm1.ann1.PC0NS4 Arachis hypogaea HOM05D006197 ORTHO05D007718 4.1e-26 121.3 105 61.9
Aqoxy1G03814 Aquilegia oxysepala HOM05D006197 ORTHO05D007718 5.3e-26 120.9 102 60.8
FAN18G0540 Fragaria x ananassa HOM05D006197 ORTHO05D007718 5.3e-26 120.9 100 62.0
QL12p007107 Quercus lobata HOM05D006197 ORTHO05D007718 5.3e-26 120.9 103 59.2
Rhsim11G0011100 Rhododendron simsii HOM05D006197 ORTHO05D007718 5.3e-26 120.9 100 62.0
Sed0016057 Sechium edule HOM05D006197 ORTHO05D007718 5.3e-26 120.9 99 60.6
VMungo1215G1228 Vigna mungo HOM05D006197 ORTHO05D007718 5.3e-26 120.9 103 61.2
Peaxi162Scf00084g00099 Petunia axillaris HOM05D006197 ORTHO05D007718 7.0e-26 120.6 98 65.3
FAN08G0099 Fragaria x ananassa HOM05D006197 ORTHO05D007718 1.2e-25 119.8 100 61.0
VMungo1215G3393 Vigna mungo HOM05D006197 ORTHO05D007718 1.5e-25 119.4 104 60.6
ECA240G0414 Erigeron canadensis HOM05D006197 ORTHO05D007718 2.0e-25 119.0 106 59.4
Sed0004723 Sechium edule HOM05D006197 ORTHO05D007718 2.0e-25 119.0 99 56.6
Oeu006551.1 Olea europaea HOM05D006197 ORTHO05D007718 3.5e-25 118.2 104 59.6
Phvul.002G004500 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 4.5e-25 117.9 101 58.4
FAN13G1034 Fragaria x ananassa HOM05D006197 ORTHO05D007718 5.9e-25 117.5 96 61.5
Medtr5g013975 Medicago truncatula HOM05D006197 ORTHO05D007718 5.9e-25 117.5 106 58.5
Glyma.01G201200 Glycine max HOM05D006197 ORTHO05D007718 7.7e-25 117.1 105 58.1
DCAR_008300 Daucus carota HOM05D006197 ORTHO05D007718 1.0e-24 116.7 101 60.4
unitig_747.g21291 Utricularia gibba HOM05D006197 ORTHO05D007718 1.0e-24 116.7 102 56.9
Cc00_g31810 Coffea canephora HOM05D006197 ORTHO05D007718 3.8e-24 114.8 89 65.2
PSO832G1675 Papaver somniferum HOM05D006197 ORTHO05D007718 3.8e-24 114.8 98 56.1
PSO210G4997 Papaver somniferum HOM05D006197 ORTHO05D007718 5.0e-24 114.4 98 56.1
MELO3C003373.2 Cucumis melo HOM05D006197 ORTHO05D007718 8.5e-24 113.6 100 56.0
Ca_24632_v3 Cicer arietinum L. HOM05D006197 ORTHO05D007718 1.1e-23 113.2 105 61.0
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 3.2e-23 111.7 76 68.4
TAR624G0346 Trochodendron aralioides HOM05D006197 ORTHO05D007718 3.2e-23 111.7 96 56.2
Lj2g0021118 Lotus japonicus HOM05D006197 ORTHO05D007718 4.2e-23 111.3 100 57.0
CsaV3_3G049530 Cucumis sativus L. HOM05D006197 ORTHO05D007718 9.4e-23 110.2 100 54.0
AUR62018769 Chenopodium quinoa HOM05D006197 ORTHO05D007718 2.1e-22 109.0 102 58.8
Cc08_g02050 Coffea canephora HOM05D006197 ORTHO05D007718 2.1e-22 109.0 95 61.1
Lalb_Chr09g0323941 Lupinus albus HOM05D006197 ORTHO05D007718 2.1e-22 109.0 118 50.0
Duzib084G1370 Durio zibethinus HOM05D006197 ORTHO05D007718 2.7e-22 108.6 98 56.1
EL10Ac5g12195 Beta vulgaris HOM05D006197 ORTHO05D007718 3.6e-22 108.2 100 56.0
AUR62007231 Chenopodium quinoa HOM05D006197 ORTHO05D007718 3.6e-22 108.2 103 60.2
Sc01g0007760 Simmondsia chinensis HOM05D006197 ORTHO05D007718 3.6e-22 108.2 65 80.0
Psat2g174760 Pisum sativum HOM05D006197 ORTHO05D007718 4.7e-22 107.8 105 57.1
Cc08_g01990 Coffea canephora HOM05D006197 ORTHO05D007718 6.1e-22 107.5 67 76.1
Ah.12g053650 Amaranthus hybridus HOM05D006197 ORTHO05D007718 1.0e-21 106.7 100 57.0
Phvul.002G003700 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 2.0e-20 102.4 101 52.5
TPR.G6747 Trifolium pratense HOM05D006197 ORTHO05D007718 7.4e-20 100.5 62 72.6
ATR1088G052 Amborella trichopoda HOM05D006197 ORTHO05D007718 1.3e-19 99.8 106 51.9
Os05g0500450 Oryza sativa ssp. japonica HOM05D006197 ORTHO05D007718 1.7e-19 99.4 105 53.3
Cc08_g01910 Coffea canephora HOM05D006197 ORTHO05D007718 1.8e-18 95.9 98 55.1
AagrBONN_evm.TU.Sc2ySwM_368.296 Anthoceros agrestis HOM05D006197 ORTHO05D007718 9.1e-18 93.6 90 47.8
Eucgr.C01972 Eucalyptus grandis HOM05D006197 ORTHO05D007718 2.2e-16 89.0 66 60.6
Pp3c14_9970 Physcomitrium patens HOM05D006197 ORTHO05D007718 3.8e-16 88.2 99 47.5
Mapoly0127s0016 Marchantia polymorpha HOM05D006197 ORTHO05D007718 8.5e-16 87.0 85 48.2
Mapoly0046s0110 Marchantia polymorpha HOM05D006197 ORTHO05D007718 1.1e-15 86.7 84 48.8
CBR_g8168 Chara braunii HOM05D006197 ORTHO05D007718 5.5e-15 84.3 52 71.2
Nn1g08520 Nelumbo nucifera HOM05D006197 ORTHO05D007718 6.1e-14 80.9 96 47.9
CAN.G799.18 Capsicum annuum HOM05D006197 ORTHO05D007718 2.0e-12 75.9 55 67.3
SMO119G0374 Selaginella moellendorffii HOM05D006197 ORTHO05D007718 1.3e-11 73.2 50 70.0
Cc08_g01940 Coffea canephora HOM05D000011 ORTHO05D000157 1.1e-10 70.1 32 90.6
Migut.E01523 Erythranthe guttata HOM05D006197 ORTHO05D007718 2.0e-09 65.9 136 33.1
Migut.E01526 Erythranthe guttata HOM05D006197 ORTHO05D007718 2.7e-09 65.5 70 48.6


User provided reference genes

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