Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 2.6e-256 888.3 458 100.0
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.6e-245 852.4 458 95.4
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 1.4e-241 839.3 458 93.4
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 1.7e-239 832.4 459 93.0
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 1.7e-239 832.4 457 93.2
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 2.9e-239 831.6 459 93.2
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 1.9e-238 828.9 460 92.8
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 1.6e-237 825.9 460 92.6
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.7e-237 825.1 460 93.0
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 1.0e-236 823.2 460 92.4
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.0e-236 823.2 461 92.4
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 6.9e-217 757.3 455 85.5
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.3e-215 753.1 455 84.2
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 3.8e-215 751.5 454 83.9
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.1e-214 750.0 455 83.5
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 2.3e-212 742.3 451 82.9
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 3.9e-212 741.5 451 83.1
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 6.6e-212 740.7 455 82.9
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 8.7e-212 740.3 451 82.7
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 1.1e-211 740.0 455 82.6
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 1.1e-211 740.0 455 82.6
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 2.5e-211 738.8 455 82.4
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 5.6e-211 737.6 455 82.4
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 3.6e-210 734.9 455 82.4
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 1.1e-209 733.4 454 82.6
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 7.6e-208 727.2 454 80.6
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.2e-207 725.7 478 79.1
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 2.2e-207 725.7 454 80.6
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 2.2e-207 725.7 454 80.6
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 1.3e-204 716.5 482 76.6
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 2.3e-196 689.1 475 75.4
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 3.0e-188 662.1 453 72.8
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 3.4e-184 648.7 453 71.5
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 2.9e-183 645.6 458 71.6
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 1.4e-182 643.3 451 72.3
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 7.2e-182 641.0 465 69.2
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 7.2e-182 641.0 450 70.4
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 4.6e-181 638.3 450 70.4
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 6.1e-181 637.9 451 71.8
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 6.1e-181 637.9 453 72.4
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 7.9e-181 637.5 456 71.1
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 1.8e-180 636.3 453 71.5
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 3.9e-180 635.2 453 70.4
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.1e-179 633.6 451 71.2
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 5.7e-179 631.3 458 69.0
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 9.7e-179 630.6 458 70.1
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 9.7e-179 630.6 458 70.1
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 2.4e-177 625.9 436 69.7
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 5.3e-177 624.8 391 80.3
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 2.0e-176 622.9 476 68.7
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 3.4e-176 622.1 476 68.7
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 7.7e-176 620.9 449 70.8
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 1.0e-175 620.5 448 70.8
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 2.2e-175 619.4 448 69.4
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 8.5e-175 617.5 448 71.0
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 1.2e-173 613.6 454 67.8
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 2.1e-173 612.8 447 70.0
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 2.7e-173 612.5 448 68.8
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 4.6e-173 611.7 447 70.2
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 2.3e-172 609.4 451 67.8
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 5.1e-172 608.2 447 68.2
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 6.7e-172 607.8 450 68.7
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 5.7e-171 604.7 451 67.2
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 1.7e-170 603.2 450 66.0
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 2.8e-170 602.4 458 64.8
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 3.7e-170 602.1 451 67.8
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 4.8e-170 601.7 458 65.1
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 8.2e-170 600.9 447 68.5
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 1.1e-169 600.5 447 68.7
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 1.4e-169 600.1 454 66.7
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 1.4e-169 600.1 451 67.4
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 3.1e-169 599.0 451 67.2
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 4.1e-169 598.6 452 67.0
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 5.3e-169 598.2 451 67.2
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 1.5e-168 596.7 467 65.5
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 2.6e-168 595.9 448 67.9
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.5e-168 595.1 456 66.2
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 1.3e-167 593.6 455 67.0
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 2.9e-167 592.4 461 65.7
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 3.2e-166 589.0 386 75.6
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 5.5e-166 588.2 450 66.2
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 5.5e-166 588.2 450 66.2
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 5.5e-166 588.2 455 66.6
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 7.2e-166 587.8 492 62.8
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 9.4e-166 587.4 457 66.1
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 3.6e-165 585.5 458 66.2
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 6.1e-165 584.7 450 65.6
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 1.0e-164 583.9 451 66.3
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.8e-164 583.2 452 64.8
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 6.7e-164 581.3 478 61.5
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 1.1e-163 580.5 456 67.1
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 1.1e-163 580.5 428 67.5
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 3.5e-160 568.9 442 64.5
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 1.3e-159 567.0 471 62.0
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 2.9e-159 565.8 442 64.5
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.8e-159 565.5 444 65.5
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.8e-159 565.5 458 62.2
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.5e-158 563.5 447 65.1
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 1.9e-158 563.1 461 61.0
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 5.5e-158 561.6 451 62.7
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 6.1e-157 558.1 443 63.0
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.7e-154 550.1 420 67.6
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 2.4e-153 546.2 395 68.1
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 3.1e-153 545.8 452 61.5
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 2.7e-152 542.7 403 67.7
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 7.7e-152 541.2 550 53.1
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.9e-150 536.6 478 58.4
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 5.5e-150 535.0 396 66.9
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 5.5e-150 535.0 473 59.0
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.4e-145 519.6 446 59.2
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 4.0e-140 502.3 445 57.1
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 6.8e-140 501.5 290 89.3
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.6e-139 499.6 404 61.6
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 1.1e-137 494.2 452 56.2
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 7.0e-137 491.5 446 57.4
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.9e-135 486.1 383 62.9
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 1.6e-133 480.3 432 56.5
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 8.0e-133 478.0 349 69.6
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 1.8e-132 476.9 447 54.4
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 2.0e-128 463.4 453 50.8
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 3.5e-128 462.6 447 52.1
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 1.2e-123 447.6 398 56.3
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 7.0e-121 438.3 449 54.6
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.7e-120 436.4 440 57.0
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 7.8e-120 434.9 459 50.5
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 1.1e-118 431.0 459 49.9
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 2.5e-118 429.9 459 49.7
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 2.0e-115 420.2 286 71.3
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 5.4e-113 412.1 452 48.7
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 1.9e-110 403.7 319 66.1
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 6.9e-100 368.6 447 45.9
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 4.9e-98 362.5 263 67.3
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.7e-96 356.7 391 50.6
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.4e-89 334.3 264 64.4
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.9e-79 299.7 458 40.0
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 5.6e-78 295.8 316 53.5
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 5.1e-71 272.7 449 40.1
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 1.9e-70 270.8 195 66.7
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 3.8e-58 229.9 177 66.7
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 3.6e-56 223.4 158 70.9
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.3e-53 214.9 129 76.0
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 6.7e-47 192.6 152 61.8
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 5.7e-46 189.5 193 52.3
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 6.7e-39 166.0 125 64.8
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 3.7e-37 160.2 121 66.9
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 2.0e-30 137.9 94 69.1
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 3.5e-27 127.1 133 53.4
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 8.6e-26 122.5 119 58.0
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 5.5e-25 119.8 112 54.5
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 6.1e-24 116.3 74 70.3
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 7.5e-22 109.4 82 67.1
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 8.3e-21 105.9 99 51.5
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 1.4e-15 88.6 59 76.3
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 1.7e-13 81.6 58 65.5
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 9.2e-12 75.9 63 57.1
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 4.6e-11 73.6 77 57.1
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 3.6e-08 63.9 48 66.7
FvH4_5g06577 Fragaria vesca HOM05D000025 ORTHO05D000040 7.5e-06 56.2 37 73.0


User provided reference genes

Program Settings