Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 5.3e-90 334.3 171 100.0
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 3.0e-85 318.5 171 94.2
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 1.7e-83 312.8 171 91.8
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 1.7e-83 312.8 171 91.8
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 2.0e-81 305.8 171 90.6
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 1.0e-80 303.5 168 90.5
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 1.0e-80 303.5 172 89.0
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 4.2e-79 298.1 164 90.2
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 4.2e-79 298.1 164 90.2
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 4.2e-79 298.1 164 90.2
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 3.6e-78 295.0 171 87.1
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 1.0e-77 293.5 171 86.5
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.0e-77 293.5 171 86.5
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 2.3e-77 292.4 171 84.8
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 4.0e-77 291.6 171 86.5
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 9.8e-76 287.0 171 83.6
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 9.8e-76 287.0 171 83.6
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 1.3e-75 286.6 171 83.6
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.7e-75 286.2 171 84.2
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 2.2e-75 285.8 171 84.2
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 6.3e-75 284.3 171 82.5
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 8.3e-75 283.9 171 83.0
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 1.1e-74 283.5 171 84.8
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 5.4e-74 281.2 171 81.9
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 1.2e-70 270.0 171 76.6
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 6.8e-69 264.2 172 76.2
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 1.5e-68 263.1 171 73.7
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 5.8e-68 261.2 172 75.6
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 9.8e-68 260.4 171 75.4
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 9.8e-68 260.4 175 74.3
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.3e-67 260.0 175 74.3
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 3.7e-67 258.5 173 74.6
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 8.3e-67 257.3 174 74.7
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 1.9e-66 256.1 172 73.8
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 2.4e-66 255.8 173 74.6
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 4.1e-66 255.0 173 75.1
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 4.1e-66 255.0 170 75.9
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 4.1e-66 255.0 172 74.4
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 2.0e-65 252.7 173 73.4
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 2.7e-65 252.3 169 72.2
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 2.7e-65 252.3 173 72.3
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 3.5e-65 251.9 172 72.7
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 3.5e-65 251.9 169 71.6
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 4.6e-65 251.5 173 71.7
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 6.0e-65 251.1 174 71.3
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 6.0e-65 251.1 173 71.7
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 7.8e-65 250.8 172 73.3
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 7.8e-65 250.8 173 71.7
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.0e-64 250.4 201 65.7
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 1.0e-64 250.4 175 72.0
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.0e-64 250.4 174 71.3
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.0e-64 250.4 173 72.3
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 1.0e-64 250.4 169 72.2
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.7e-64 249.6 174 71.3
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 1.7e-64 249.6 178 73.0
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.0e-64 248.8 201 65.2
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.0e-64 248.8 201 65.2
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 3.0e-64 248.8 173 71.7
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 5.0e-64 248.1 181 69.1
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 5.0e-64 248.1 169 71.0
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 5.0e-64 248.1 167 71.3
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 6.6e-64 247.7 174 70.7
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 6.6e-64 247.7 168 71.4
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 8.6e-64 247.3 181 71.3
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.9e-63 246.1 170 70.0
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 2.5e-63 245.7 173 68.8
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.5e-63 245.7 173 69.4
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 3.3e-63 245.4 174 70.7
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 3.3e-63 245.4 175 70.3
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 3.3e-63 245.4 175 68.6
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 4.3e-63 245.0 173 69.4
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 1.2e-62 243.4 174 69.5
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 1.2e-62 243.4 172 67.4
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 2.1e-62 242.7 173 69.9
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 2.8e-62 242.3 174 70.7
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 2.8e-62 242.3 173 69.9
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 2.8e-62 242.3 173 69.9
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 2.8e-62 242.3 173 69.9
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 6.2e-62 241.1 173 70.5
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 1.1e-61 240.4 174 70.1
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 1.4e-61 240.0 179 68.7
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 1.4e-61 240.0 165 70.3
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 1.8e-61 239.6 174 69.5
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 8.9e-61 237.3 174 66.7
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 8.9e-61 237.3 159 72.3
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.2e-60 236.9 159 71.7
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 1.2e-60 236.9 173 68.2
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 1.5e-60 236.5 161 73.3
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 5.8e-60 234.6 159 71.1
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 9.8e-60 233.8 208 59.1
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 1.3e-59 233.4 159 71.1
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 6.4e-59 231.1 168 67.3
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 6.4e-59 231.1 173 68.8
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 8.3e-59 230.7 170 67.6
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 4.1e-58 228.4 160 70.0
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 4.1e-58 228.4 196 62.8
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 5.4e-58 228.0 173 63.6
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 5.4e-58 228.0 168 63.7
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 7.1e-58 227.6 157 70.1
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 9.2e-58 227.3 167 65.9
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.1e-57 226.1 159 71.7
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 6.0e-57 224.6 183 62.3
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 1.3e-56 223.4 225 51.6
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 2.3e-56 222.6 173 62.4
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.5e-55 219.2 139 74.8
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 4.3e-55 218.4 166 63.3
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.2e-54 216.9 210 57.6
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 3.6e-54 215.3 191 63.4
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 8.1e-54 214.2 176 62.5
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 6.8e-53 211.1 171 60.8
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.5e-52 209.9 219 54.3
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 5.8e-52 208.0 263 46.4
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 2.1e-49 199.5 142 68.3
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 6.6e-48 194.5 187 57.2
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 2.5e-47 192.6 175 61.1
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.1e-45 187.2 120 72.5
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 8.9e-45 184.1 172 60.5
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 1.5e-44 183.3 113 74.3
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 5.4e-42 174.9 116 80.2
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.0e-40 170.6 168 50.6
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 1.3e-38 163.7 107 74.8
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 8.4e-35 151.0 107 68.2
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 1.9e-34 149.8 119 65.5
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 1.9e-34 149.8 116 59.5
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 2.4e-34 149.4 135 52.6
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 2.7e-33 146.0 109 68.8
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 4.6e-33 145.2 144 46.5
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 8.7e-32 141.0 150 44.7
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 2.5e-31 139.4 96 71.9
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 9.6e-31 137.5 81 82.7
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 9.6e-31 137.5 81 82.7
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 2.8e-30 136.0 82 87.8
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 8.1e-30 134.4 112 60.7
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 2.2e-27 126.3 100 63.0
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 5.4e-26 121.7 103 64.1
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 1.5e-23 113.6 65 86.2
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 4.0e-21 105.5 63 74.6
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 1.7e-19 100.1 101 41.6
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 2.2e-19 99.8 61 73.8
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.2e-19 99.8 96 55.2
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 4.9e-19 98.6 64 71.9
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 1.9e-18 96.7 131 34.4
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 3.2e-18 95.9 104 40.4
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.2e-18 95.5 93 53.8
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 6.0e-17 91.7 62 62.9
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 1.8e-16 90.1 82 50.0
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 4.8e-14 82.0 106 34.9
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 1.2e-12 77.4 50 66.0
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 1.0e-11 74.3 136 33.8
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.3e-11 73.9 104 42.3
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 9.7e-07 57.8 32 87.5


User provided reference genes

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