Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g02640 Schrenkiella parvula HOM05D006574 ORTHO05D008210 4.0e-179 631.3 324 100.0
Thhalv10006432m.g Eutrema salsugineum HOM05D006574 ORTHO05D008210 9.9e-162 573.5 329 90.6
AT3G60590 Arabidopsis thaliana HOM05D006574 ORTHO05D008210 6.2e-156 554.3 331 87.0
BcaB02g08163 Brassica carinata HOM05D006574 ORTHO05D008210 1.3e-153 546.6 321 87.5
Carub.0005s2733 Capsella rubella HOM05D006574 ORTHO05D008210 1.3e-153 546.6 333 86.5
BraA04t15877Z Brassica rapa HOM05D006574 ORTHO05D008210 4.2e-152 541.6 328 87.2
BcaC02g10162 Brassica carinata HOM05D006574 ORTHO05D008210 3.0e-150 535.4 329 86.0
C04p32070 Brassica napus HOM05D006574 ORTHO05D008210 3.0e-150 535.4 329 86.0
BolC4t24760H Brassica oleracea HOM05D006574 ORTHO05D008210 3.0e-150 535.4 329 86.0
A04p01560 Brassica napus HOM05D006574 ORTHO05D008210 8.7e-150 533.9 327 84.7
C08p35540 Brassica napus HOM05D006574 ORTHO05D008210 8.2e-148 527.3 324 84.3
BolC8t51146H Brassica oleracea HOM05D006574 ORTHO05D008210 4.5e-146 521.5 324 83.6
BraA09t40713Z Brassica rapa HOM05D006574 ORTHO05D008210 1.0e-145 520.4 325 82.8
A09p52810 Brassica napus HOM05D006574 ORTHO05D008210 7.1e-144 514.2 325 81.8
CARHR171000 Cardamine hirsuta HOM05D006574 ORTHO05D008210 6.7e-142 507.7 330 80.3
Aa31LG10G14870 Aethionema arabicum HOM05D006574 ORTHO05D008210 6.3e-132 474.6 330 76.4
THA.LOC104817218 Tarenaya hassleriana HOM05D006574 ORTHO05D008210 1.3e-121 440.3 332 71.4
Cpa.g.sc129.21 Carica papaya HOM05D006574 ORTHO05D008210 2.2e-105 386.3 339 61.4
Sabra14G0044800 Salix brachista HOM05D006574 ORTHO05D008210 1.6e-103 380.2 336 60.1
Potri.014G061000 Populus trichocarpa HOM05D006574 ORTHO05D008210 2.2e-100 369.8 331 59.8
CANSAT56G0701 Cannabis sativa HOM05D006574 ORTHO05D008210 3.7e-100 369.0 288 63.2
QL04p038697 Quercus lobata HOM05D006574 ORTHO05D008210 3.7e-100 369.0 288 64.2
CANSAT56G2026 Cannabis sativa HOM05D006574 ORTHO05D008210 4.8e-100 368.6 288 63.2
Prupe.2G138000 Prunus persica HOM05D006574 ORTHO05D008210 6.3e-100 368.2 318 60.1
MD07G1115500 Malus domestica HOM05D006574 ORTHO05D008210 3.1e-99 365.9 287 63.8
Lj3g0024356 Lotus japonicus HOM05D006574 ORTHO05D008210 4.1e-99 365.5 342 57.6
Thecc.01G382800 Theobroma cacao HOM05D006574 ORTHO05D008210 4.1e-99 365.5 337 58.5
CiPaw.13G032400 Carya illinoinensis HOM05D006574 ORTHO05D008210 5.4e-99 365.2 281 64.4
Cfa011166 Carpinus fangiana HOM05D006574 ORTHO05D008210 1.6e-98 363.6 311 60.5
Dinv43672 Davidia involucrata HOM05D006574 ORTHO05D008210 2.0e-98 363.2 333 56.8
Medtr4g027070 Medicago truncatula HOM05D006574 ORTHO05D008210 2.0e-98 363.2 289 61.9
RcHm_v2.0_Chr1g0349101 Rosa chinensis HOM05D006574 ORTHO05D008210 2.0e-98 363.2 333 58.9
Ciclev10021078m.g Citrus clementina HOM05D006574 ORTHO05D008210 2.7e-98 362.8 293 62.1
TPR.G4993 Trifolium pratense HOM05D006574 ORTHO05D008210 7.7e-98 361.3 289 61.9
Hma1.2p1_0386F.1_g141830 Hydrangea macrophylla HOM05D006574 ORTHO05D008210 5.0e-97 358.6 292 61.3
Ca_19840_v3 Cicer arietinum L. HOM05D006574 ORTHO05D008210 2.5e-96 356.3 282 62.1
Manes.05G049100 Manihot esculenta HOM05D006574 ORTHO05D008210 2.5e-96 356.3 281 63.3
FAN03G3328 Fragaria x ananassa HOM05D006574 ORTHO05D008210 4.2e-96 355.5 335 56.4
CSS0016139 Camellia sinensis var. sinensis HOM05D006574 ORTHO05D008210 5.5e-96 355.1 336 56.2
CSS0019673 Camellia sinensis var. sinensis HOM05D006574 ORTHO05D008210 5.5e-96 355.1 336 56.2
GSVIVG01027684001 Vitis vinifera HOM05D006574 ORTHO05D008210 5.5e-96 355.1 327 56.3
arahy.Tifrunner.gnm1.ann1.KNQ922 Arachis hypogaea HOM05D006574 ORTHO05D008210 1.6e-95 353.6 339 56.3
Glyma.03G032200 Glycine max HOM05D006574 ORTHO05D008210 1.6e-95 353.6 312 58.7
FAN01G0938 Fragaria x ananassa HOM05D006574 ORTHO05D008210 2.1e-95 353.2 335 56.1
Lalb_Chr12g0207901 Lupinus albus HOM05D006574 ORTHO05D008210 3.6e-95 352.4 343 55.4
Lalb_Chr07g0190251 Lupinus albus HOM05D006574 ORTHO05D008210 4.7e-95 352.1 309 58.6
COL.COLO4_12488 Corchorus olitorius HOM05D006574 ORTHO05D008210 1.4e-94 350.5 309 58.6
FAN10G1171 Fragaria x ananassa HOM05D006574 ORTHO05D008210 2.3e-94 349.7 335 55.2
FAN10G3734 Fragaria x ananassa HOM05D006574 ORTHO05D008210 2.3e-94 349.7 335 55.5
Glyma.01G135900 Glycine max HOM05D006574 ORTHO05D008210 2.3e-94 349.7 312 57.7
Psat7g236040 Pisum sativum HOM05D006574 ORTHO05D008210 3.0e-94 349.4 321 56.1
Sed0000081 Sechium edule HOM05D006574 ORTHO05D008210 5.2e-94 348.6 331 53.8
Duzib138G0195 Durio zibethinus HOM05D006574 ORTHO05D008210 6.8e-94 348.2 340 54.1
Gohir.A11G078700 Gossypium hirsutum HOM05D006574 ORTHO05D008210 6.8e-94 348.2 337 54.9
ClCG00G005790 Citrullus lanatus HOM05D006574 ORTHO05D008210 1.2e-93 347.4 328 55.2
Gohir.D11G083300 Gossypium hirsutum HOM05D006574 ORTHO05D008210 2.0e-93 346.7 331 55.6
Gorai.007G088900 Gossypium raimondii HOM05D006574 ORTHO05D008210 9.8e-93 344.4 331 55.3
VMungo0331G0612 Vigna mungo HOM05D006574 ORTHO05D008210 3.7e-92 342.4 342 53.5
MELO3C005473.2 Cucumis melo HOM05D006574 ORTHO05D008210 6.3e-92 341.7 305 56.4
Aqoxy5G03888 Aquilegia oxysepala HOM05D006574 ORTHO05D008210 3.2e-91 339.3 283 60.1
EL10Ac1g00838 Beta vulgaris HOM05D006574 ORTHO05D008210 5.4e-91 338.6 292 58.2
TWI59G0788 Tripterygium wilfordii HOM05D006574 ORTHO05D008210 5.4e-91 338.6 320 55.9
CsaV3_5G004680 Cucumis sativus L. HOM05D006574 ORTHO05D008210 1.6e-90 337.0 333 53.2
FvH4_7g11080 Fragaria vesca HOM05D006574 ORTHO05D008210 1.0e-89 334.3 349 52.7
Phvul.010G072300 Phaseolus vulgaris HOM05D006574 ORTHO05D008210 1.7e-89 333.6 312 55.4
FAN06G3094 Fragaria x ananassa HOM05D006574 ORTHO05D008210 2.3e-89 333.2 351 52.7
FAN06G2171 Fragaria x ananassa HOM05D006574 ORTHO05D008210 3.9e-89 332.4 351 52.4
TAR374G0842 Trochodendron aralioides HOM05D006574 ORTHO05D008210 6.6e-89 331.6 283 58.0
AUR62004165 Chenopodium quinoa HOM05D006574 ORTHO05D008210 8.6e-89 331.3 287 58.5
vmacro13444 Vaccinium macrocarpon HOM05D006574 ORTHO05D008210 1.5e-88 330.5 314 53.5
vmacro22438 Vaccinium macrocarpon HOM05D006574 ORTHO05D008210 1.5e-88 330.5 314 53.5
AUR62013662 Chenopodium quinoa HOM05D006574 ORTHO05D008210 1.9e-88 330.1 287 58.2
Oeu000020.1 Olea europaea HOM05D006574 ORTHO05D008210 9.5e-88 327.8 334 53.3
DCAR_015883 Daucus carota HOM05D006574 ORTHO05D008210 1.2e-87 327.4 289 57.8
CAN.G1872.8 Capsicum annuum HOM05D006574 ORTHO05D008210 1.6e-87 327.0 279 58.1
PGR004G2311 Punica granatum HOM05D006574 ORTHO05D008210 1.6e-87 327.0 287 59.2
Rhsim07G0031300 Rhododendron simsii HOM05D006574 ORTHO05D008210 1.6e-87 327.0 315 54.9
HanXRQChr03g0093261 Helianthus annuus HOM05D006574 ORTHO05D008210 2.1e-87 326.6 281 55.2
Peaxi162Scf00803g00013 Petunia axillaris HOM05D006574 ORTHO05D008210 2.8e-87 326.2 284 57.0
Ah.05g173830 Amaranthus hybridus HOM05D006574 ORTHO05D008210 1.0e-86 324.3 303 54.8
Eucgr.D02492 Eucalyptus grandis HOM05D006574 ORTHO05D008210 1.0e-86 324.3 279 59.5
PSO063G4205 Papaver somniferum HOM05D006574 ORTHO05D008210 1.0e-86 324.3 281 58.4
PSO782G0696 Papaver somniferum HOM05D006574 ORTHO05D008210 2.3e-86 323.2 281 58.4
Solyc01g090900.3 Solanum lycopersicum HOM05D006574 ORTHO05D008210 2.3e-86 323.2 277 57.8
Lj7P535T34 Lonicera japonica HOM05D006574 ORTHO05D008210 4.0e-86 322.4 283 60.1
PGSC0003DMG400026016 Solanum tuberosum HOM05D006574 ORTHO05D008210 4.0e-86 322.4 282 56.7
Sopen01g036640 Solanum pennellii HOM05D006574 ORTHO05D008210 5.2e-86 322.0 282 57.1
Nitab4.5_0000859g0210 Nicotiana tabacum HOM05D006574 ORTHO05D008210 6.8e-86 321.6 282 57.1
Nitab4.5_0008963g0020 Nicotiana tabacum HOM05D006574 ORTHO05D008210 1.2e-85 320.9 280 57.5
Cc02_g24430 Coffea canephora HOM05D006574 ORTHO05D008210 3.4e-85 319.3 288 55.2
ECA240G1589 Erigeron canadensis HOM05D006574 ORTHO05D008210 7.5e-85 318.2 287 53.0
MSTRG.4912 Avicennia marina HOM05D006574 ORTHO05D008210 1.7e-81 307.0 270 59.3
Nn6g33974 Nelumbo nucifera HOM05D006574 ORTHO05D008210 1.7e-81 307.0 272 57.0
Gorai.004G163900 Gossypium raimondii HOM05D006574 ORTHO05D008210 2.3e-81 306.6 342 50.6
HanXRQChr13g0423061 Helianthus annuus HOM05D006574 ORTHO05D008210 1.4e-78 297.4 311 49.8
Migut.L01604 Erythranthe guttata HOM05D006574 ORTHO05D008210 3.1e-78 296.2 288 55.2
Actinidia22763 Actinidia chinensis HOM05D006574 ORTHO05D008210 5.8e-77 292.0 302 52.6
Lsat_1_v5_gn_3_129181 Lactuca sativa HOM05D006574 ORTHO05D008210 1.4e-75 287.3 292 49.0
Gohir.D08G157700 Gossypium hirsutum HOM05D006574 ORTHO05D008210 5.4e-75 285.4 332 48.8
Os04g0534500 Oryza sativa ssp. japonica HOM05D006574 ORTHO05D008210 1.3e-73 280.8 303 50.8
Migut.N01615 Erythranthe guttata HOM05D006574 ORTHO05D008210 5.1e-73 278.9 214 64.5
ATR0317G043 Amborella trichopoda HOM05D006574 ORTHO05D008210 4.3e-72 275.8 276 53.3
Gohir.A08G136900 Gossypium hirsutum HOM05D006574 ORTHO05D008210 8.1e-71 271.6 217 60.4
unitig_8.g3385 Utricularia gibba HOM05D006574 ORTHO05D008210 1.4e-70 270.8 274 53.3
Sc02g0002790 Simmondsia chinensis HOM05D006574 ORTHO05D008210 4.0e-70 269.2 193 67.9
HanXRQChr13g0422971 Helianthus annuus HOM05D006574 ORTHO05D008210 1.3e-68 264.2 296 46.3
HPP92_027018 Vanilla planifolia HOM05D006574 ORTHO05D008210 5.8e-61 238.8 189 62.4
CDE12G0059 Ceratophyllum demersum HOM05D006574 ORTHO05D008210 1.3e-60 237.7 212 56.6
SGA_v2.0_scaffold43G16514 Striga asiatica HOM05D006574 ORTHO05D008210 2.4e-59 233.4 194 60.8
SEGI_22327 Sequoiadendron giganteum HOM05D006574 ORTHO05D008210 2.5e-56 223.4 224 51.3
AagrBONN_evm.TU.Sc2ySwM_117.2636 Anthoceros agrestis HOM05D006574 ORTHO05D008210 1.9e-48 197.2 220 45.9
TAR374G1600 Trochodendron aralioides HOM05D006574 ORTHO05D008210 1.9e-43 180.6 162 56.8
Actinidia22819 Actinidia chinensis HOM05D006574 ORTHO05D008210 6.7e-41 172.2 182 50.5
Mapoly0010s0201 Marchantia polymorpha HOM05D006574 ORTHO05D008210 4.3e-40 169.5 210 45.2
HanXRQChr13g0422981 Helianthus annuus HOM05D006574 ORTHO05D008210 9.3e-35 151.8 200 44.5
HPP92_027026 Vanilla planifolia HOM05D006574 ORTHO05D008210 6.5e-20 102.4 69 65.2
Zm00001eb427440 Zea mays HOM05D006574 ORTHO05D008210 8.5e-20 102.1 129 47.3
vmacro22439 Vaccinium macrocarpon HOM05D006574 ORTHO05D008210 9.7e-16 88.6 60 68.3
Atru.chr5.248 Acer truncatum HOM05D006574 ORTHO05D008210 1.8e-14 84.3 60 61.7
Hma1.2p1_0386F.1_g141840 Hydrangea macrophylla HOM05D006574 ORTHO05D008210 1.4e-11 74.7 93 41.9
AagrBONN_evm.TU.Sc2ySwM_344.2339 Anthoceros agrestis HOM05D025526 ORTHO05D023512 3.2e-11 73.6 207 29.0
TAR374G0556 Trochodendron aralioides HOM05D006574 ORTHO05D008210 5.5e-11 72.8 108 37.0
PGSC0003DMG400005293 Solanum tuberosum HOM05D003072 ORTHO05D008464 9.4e-11 72.0 178 32.6
CAN.G22.19 Capsicum annuum HOM05D003072 ORTHO05D008464 2.7e-10 70.5 178 32.6
Nitab4.5_0000025g0470 Nicotiana tabacum HOM05D003072 ORTHO05D008464 1.0e-09 68.6 178 31.5
Nitab4.5_0014195g0010 Nicotiana tabacum HOM05D003072 ORTHO05D008464 1.0e-09 68.6 178 31.5
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 2.3e-09 67.4 173 31.2
Lsat_1_v5_gn_1_28241 Lactuca sativa HOM05D003072 ORTHO05D008464 3.9e-09 66.6 179 30.2
Cc04_g12330 Coffea canephora HOM05D003072 ORTHO05D008464 6.7e-09 65.9 172 30.8
Prupe.5G170600 Prunus persica HOM05D003072 ORTHO05D008464 6.7e-09 65.9 173 32.9
Mapoly0088s0089 Marchantia polymorpha HOM05D025526 ORTHO05D023512 8.8e-09 65.5 263 26.2
COL.COLO4_30098 Corchorus olitorius HOM05D003072 ORTHO05D008464 1.1e-08 65.1 192 29.7
ECA247G2325 Erigeron canadensis HOM05D003072 ORTHO05D008464 1.5e-08 64.7 172 30.8
Potri.012G088700 Populus trichocarpa HOM05D003072 ORTHO05D008464 1.5e-08 64.7 194 30.4
SGA_v2.0_scaffold25G10826 Striga asiatica HOM05D003072 ORTHO05D008464 1.5e-08 64.7 225 29.8
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 2.0e-08 64.3 194 28.4
Thecc.03G018600 Theobroma cacao HOM05D003072 ORTHO05D008464 2.6e-08 63.9 170 30.6
TAR371G0662 Trochodendron aralioides HOM05D003072 ORTHO05D008464 3.3e-08 63.5 173 31.8
CANSAT80G0622 Cannabis sativa HOM05D003072 ORTHO05D008464 4.4e-08 63.2 173 30.6
GSVIVG01007705001 Vitis vinifera HOM05D003072 ORTHO05D008464 4.4e-08 63.2 173 32.4
Actinidia19109 Actinidia chinensis HOM05D003072 ORTHO05D008464 5.7e-08 62.8 194 29.9
SalBow5G5496 Salvia bowleyana HOM05D003072 ORTHO05D008464 5.7e-08 62.8 172 30.2
Sabra12G0063900 Salix brachista HOM05D003072 ORTHO05D008464 7.4e-08 62.4 195 29.2
TWI23G0250 Tripterygium wilfordii HOM05D003072 ORTHO05D008464 7.4e-08 62.4 197 30.5
AagrBONN_evm.TU.Sc2ySwM_228.2830 Anthoceros agrestis HOM05D025526 ORTHO05D023512 9.7e-08 62.0 204 28.9
Lalb_Chr23g0273311 Lupinus albus HOM05D003072 ORTHO05D008464 9.7e-08 62.0 173 30.6
ClCG06G017110 Citrullus lanatus HOM05D003072 ORTHO05D008464 1.3e-07 61.6 173 31.2
Aqoxy3G02847 Aquilegia oxysepala HOM05D003072 ORTHO05D008464 1.7e-07 61.2 173 30.1
MD06G1171000 Malus domestica HOM05D003072 ORTHO05D008464 1.7e-07 61.2 195 29.2
Pp3c21_4590 Physcomitrium patens HOM05D003072 ORTHO05D008464 1.7e-07 61.2 179 29.1
Cfa019166 Carpinus fangiana HOM05D003072 ORTHO05D008464 2.8e-07 60.5 173 30.1
HanXRQChr02g0035971 Helianthus annuus HOM05D003072 ORTHO05D008464 2.8e-07 60.5 169 29.6
QL10p010881 Quercus lobata HOM05D003072 ORTHO05D008464 3.7e-07 60.1 173 29.5
Sed0027860 Sechium edule HOM05D003072 ORTHO05D008464 3.7e-07 60.1 173 30.6
Duzib068G0599 Durio zibethinus HOM05D003072 ORTHO05D008464 6.3e-07 59.3 170 30.0
Gohir.A09G172700 Gossypium hirsutum HOM05D003072 ORTHO05D008464 6.3e-07 59.3 192 28.1
RcHm_v2.0_Chr7g0193191 Rosa chinensis HOM05D003072 ORTHO05D008464 6.3e-07 59.3 195 28.7
vmacro16626 Vaccinium macrocarpon HOM05D003072 ORTHO05D008464 6.3e-07 59.3 198 29.3
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.1e-06 58.5 195 28.2
FAN18G3341 Fragaria x ananassa HOM05D003072 ORTHO05D008464 1.1e-06 58.5 195 28.2
Gohir.D09G168400 Gossypium hirsutum HOM05D003072 ORTHO05D008464 1.1e-06 58.5 193 28.0
Ciclev10020708m.g Citrus clementina HOM05D003072 ORTHO05D008464 1.4e-06 58.2 195 29.7
Eucgr.K02823 Eucalyptus grandis HOM05D003072 ORTHO05D008464 1.4e-06 58.2 171 31.0
FAN04G2540 Fragaria x ananassa HOM05D003072 ORTHO05D008464 1.4e-06 58.2 195 28.2
Gorai.006G190000 Gossypium raimondii HOM05D003072 ORTHO05D008464 1.4e-06 58.2 192 28.1
Rhsim12G0166200 Rhododendron simsii HOM05D003072 ORTHO05D008464 1.4e-06 58.2 203 28.6
MD14G1176700 Malus domestica HOM05D003072 ORTHO05D008464 1.8e-06 57.8 195 29.2
Manes.06G107000 Manihot esculenta HOM05D003072 ORTHO05D008464 1.8e-06 57.8 172 29.7
ATR1152G060 Amborella trichopoda HOM05D003072 ORTHO05D008464 2.4e-06 57.4 172 30.2
AagrBONN_evm.TU.Sc2ySwM_344.2078 Anthoceros agrestis HOM05D003072 ORTHO05D008464 3.1e-06 57.0 179 30.7
Glyma.05G039200 Glycine max HOM05D003072 ORTHO05D008464 3.1e-06 57.0 252 26.2
Atru.chr9.2517 Acer truncatum HOM05D003072 ORTHO05D008464 4.1e-06 56.6 195 28.7
Migut.O00122 Erythranthe guttata HOM05D003072 ORTHO05D008464 4.1e-06 56.6 175 29.1
CsaV3_1G001390 Cucumis sativus L. HOM05D003072 ORTHO05D008464 7.0e-06 55.8 173 30.1
Medtr3g077500 Medicago truncatula HOM05D003072 ORTHO05D008464 7.0e-06 55.8 173 29.5
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 9.1e-06 55.5 173 28.9
Sc10g0010140 Simmondsia chinensis HOM05D003072 ORTHO05D008464 9.1e-06 55.5 204 27.9


User provided reference genes

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