Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 2424.0 1248 100.0
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 2203.7 1252 91.3
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 2201.8 1252 91.5
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 2193.3 1250 91.0
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 2191.8 1250 90.9
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 2186.0 1254 90.7
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 2145.9 1251 89.4
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 2092.8 1256 85.0
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 2072.7 1256 84.8
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 2072.4 1257 85.3
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 2059.3 1255 84.6
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 2036.2 1256 83.4
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1949.5 1185 85.6
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1868.6 1260 76.7
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1685.6 1251 70.0
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1668.7 1249 69.1
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1665.2 1279 67.9
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1665.2 1249 69.4
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1664.8 1277 68.4
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1664.4 1254 68.7
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1664.0 1254 68.6
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1663.7 1279 67.7
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1661.7 1253 68.6
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1661.0 1260 68.7
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1660.6 1279 67.6
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1659.4 1251 68.3
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1649.0 1246 68.9
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1641.7 1280 67.0
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1640.9 1275 66.7
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1634.4 1262 66.3
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1632.5 1249 69.1
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1631.3 1245 68.4
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1630.2 1273 68.0
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1622.8 1271 67.1
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1618.6 1258 66.9
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1612.8 1265 65.6
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1612.0 1258 66.7
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1611.7 1258 66.5
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1609.3 1257 66.9
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1608.6 1259 66.9
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1607.8 1274 66.7
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1606.3 1259 66.2
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1605.1 1258 66.1
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1603.6 1257 67.1
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1601.6 1259 66.4
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1596.3 1257 65.9
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1593.9 1277 64.7
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1592.0 1257 66.5
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1587.8 1268 65.4
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1583.2 1248 65.7
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1583.2 1266 65.0
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1582.0 1270 65.9
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1577.0 1256 65.2
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1574.3 1329 63.1
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1574.3 1246 64.8
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1573.5 1271 64.3
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1571.2 1255 65.6
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1570.8 1282 65.6
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1570.1 1275 64.9
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1567.7 1270 64.7
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1564.7 1243 65.5
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1560.0 1245 63.9
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1557.7 1274 64.0
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1555.8 1248 64.4
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1552.7 1263 63.7
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1551.6 1252 64.2
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1550.8 1246 64.9
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1549.3 1293 63.5
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1547.7 1320 63.1
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1546.6 1251 64.6
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1536.9 1257 64.0
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1534.2 1234 64.3
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1534.2 1273 63.6
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1532.3 1271 63.6
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1530.0 1320 61.8
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1528.8 1180 67.1
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1528.1 1314 62.3
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1523.5 1309 62.8
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1522.3 1264 64.7
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1520.8 1262 63.6
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1477.2 1169 65.6
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1473.8 1277 61.3
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1467.2 1286 61.7
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1463.0 1252 61.8
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1449.5 1184 63.8
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1444.5 1180 65.3
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1439.1 1271 60.4
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1390.9 1146 62.9
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1365.1 1234 59.5
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1362.4 1013 69.7
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1358.2 1252 57.3
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1355.5 1236 58.2
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1344.7 1232 58.1
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1338.2 1243 58.2
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1332.8 1022 66.8
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1157.5 1022 60.2
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1112.4 1248 47.5
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1097.4 1256 48.2
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1092.0 883 63.1
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1080.5 962 58.6
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1078.9 1234 50.2
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 7.6e-303 1044.3 936 61.2
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 1.7e-286 989.9 679 75.3
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 1.4e-280 970.3 885 58.3
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 3.1e-272 942.6 1291 43.4
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 1.5e-266 923.7 791 60.2
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 5.7e-266 921.8 558 86.2
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 3.1e-264 916.0 813 59.5
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 1.0e-262 911.0 600 80.0
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 2.1e-252 876.7 1233 42.8
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 1.5e-202 711.1 1270 36.9
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 1.8e-179 634.4 470 70.4
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 1.6e-175 621.3 1086 37.5
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 2.5e-168 597.4 1255 33.2
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 7.2e-168 595.9 496 64.3
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 1.4e-163 581.6 600 52.2
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 1.0e-142 512.3 647 47.0
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 3.4e-125 454.1 328 69.2
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 3.2e-123 447.6 1157 30.5
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 1.7e-113 415.2 276 76.1
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 5.1e-113 413.7 709 40.6
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 2.5e-96 358.2 251 76.9
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.0e-89 336.3 339 54.3
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 3.9e-89 334.3 254 71.7
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 1.1e-75 289.7 200 74.5
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 4.2e-75 287.7 266 57.9
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 4.2e-75 287.7 266 57.9
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 4.6e-74 284.3 249 59.0
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 3.7e-63 248.1 157 81.5
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.8e-49 202.6 104 91.3
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 5.5e-43 181.0 136 73.5
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 7.0e-38 164.1 117 76.9
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 1.2e-37 163.3 179 50.3
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 7.7e-37 160.6 174 51.1
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 8.0e-34 150.6 160 52.5
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 1.8e-33 149.4 159 58.5
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 5.7e-32 144.4 114 71.1
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 7.7e-29 134.0 1219 22.1
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 5.7e-24 117.9 223 35.0
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 1.3e-20 106.7 122 42.6
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 3.3e-19 102.1 142 43.0
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 8.0e-18 97.4 121 52.1
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 1.5e-16 93.2 95 51.6
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 4.4e-16 91.7 114 44.7
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 3.5e-13 82.0 114 41.2
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 4.6e-13 81.6 114 40.4
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 1.3e-12 80.1 49 81.6
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 5.0e-12 78.2 93 41.9
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 1.5e-11 76.6 49 75.5
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 6.2e-10 71.2 267 26.6
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 3.1e-09 68.9 128 36.7
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 2.0e-08 66.2 79 45.6
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 9.8e-08 63.9 47 68.1
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 3.7e-07 62.0 56 57.1
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.9e-06 59.7 163 33.7
AagrBONN_evm.TU.Sc2ySwM_228.35 Anthoceros agrestis HOM05D004478 ORTHO05D072883 9.2e-06 57.4 70 44.3


User provided reference genes

Program Settings